RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 FAM43BQ6ZT52 329 aaPredicted RBP12.96□□□□□ -0.33
USP4-204ENST00000416417 MRPL43Q8N983 215 aaKnown RBP12.96□□□□□ -0.33
USP4-204ENST00000416417 PRPF31Q8WWY3 499 aaKnown RBP12.96□□□□□ -0.33
USP4-204ENST00000416417 LXNQ9BS40 222 aa12.96□□□□□ -0.33
USP4-204ENST00000416417 NRDE2Q9H7Z3 1164 aa12.96□□□□□ -0.33
USP4-204ENST00000416417 IFT122Q9HBG6 1241 aa12.96□□□□□ -0.33
USP4-204ENST00000416417 NGRNQ9NPE2 291 aaKnown RBP12.96□□□□□ -0.33
USP4-204ENST00000416417 FAM105AQ9NUU6 356 aa12.96□□□□□ -0.33
USP4-204ENST00000416417 TBC1D13Q9NVG8 400 aa12.96□□□□□ -0.33
USP4-204ENST00000416417 ARIH1Q9Y4X5 557 aaPredicted RBP12.96□□□□□ -0.33
USP4-204ENST00000416417 COL4A3BPQ9Y5P4 624 aa12.96□□□□□ -0.33
USP4-204ENST00000416417 HCFC2Q9Y5Z7 792 aa12.96□□□□□ -0.33
USP4-204ENST00000416417 WDFY4Q6ZS81 3184 aa12.96□□□□□ -0.34
USP4-204ENST00000416417 TMEM221A6NGB7 291 aa12.95□□□□□ -0.34
USP4-204ENST00000416417 M0R296 226 aa12.95□□□□□ -0.34
USP4-204ENST00000416417 WNT7AO00755 349 aa12.95□□□□□ -0.34
USP4-204ENST00000416417 OFD1O75665 1012 aa12.95□□□□□ -0.34
USP4-204ENST00000416417 CDKL5O76039 1030 aa12.95□□□□□ -0.34
USP4-204ENST00000416417 P4HBP07237 508 aaKnown RBP12.95□□□□□ -0.34
USP4-204ENST00000416417 FDPSP14324 419 aaKnown RBP12.95□□□□□ -0.34
USP4-204ENST00000416417 ALDH7A1P49419 539 aaKnown RBP12.95□□□□□ -0.34
USP4-204ENST00000416417 POLGP54098 1239 aaPredicted RBP12.95□□□□□ -0.34
USP4-204ENST00000416417 ZXDAP98168 799 aa12.95□□□□□ -0.34
USP4-204ENST00000416417 SMC1AQ14683 1233 aaKnown RBP12.95□□□□□ -0.34
USP4-204ENST00000416417 CBX2Q14781 532 aaPredicted RBP12.95□□□□□ -0.34
USP4-204ENST00000416417 NOMO2Q5JPE7 1267 aa12.95□□□□□ -0.34
USP4-204ENST00000416417 PPP4R3AQ6IN85 833 aa12.95□□□□□ -0.34
USP4-204ENST00000416417 TRIM67Q6ZTA4 783 aa12.95□□□□□ -0.34
USP4-204ENST00000416417 ZNF410Q86VK4 478 aa12.95□□□□□ -0.34
USP4-204ENST00000416417 ZNF280BQ86YH2 543 aa12.95□□□□□ -0.34
USP4-204ENST00000416417 VPS52Q8N1B4 723 aa12.95□□□□□ -0.34
USP4-204ENST00000416417 ZNF710Q8N1W2 664 aa12.95□□□□□ -0.34
USP4-204ENST00000416417 FAM20AQ96MK3 541 aa12.95□□□□□ -0.34
USP4-204ENST00000416417 CHST12Q9NRB3 414 aa12.95□□□□□ -0.34
USP4-204ENST00000416417 STK36Q9NRP7 1315 aa12.94□□□□□ -0.34
USP4-204ENST00000416417 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.94□□□□□ -0.34
USP4-204ENST00000416417 SSBP05455 408 aaKnown RBP eCLIP12.94□□□□□ -0.34
USP4-204ENST00000416417 EPCAMP16422 314 aa12.94□□□□□ -0.34
USP4-204ENST00000416417 SLC11A1P49279 550 aa12.94□□□□□ -0.34
USP4-204ENST00000416417 RNASELQ05823 741 aaKnown RBP12.94□□□□□ -0.34
USP4-204ENST00000416417 LAMTOR4Q0VGL1 99 aa12.94□□□□□ -0.34
USP4-204ENST00000416417 EPHA7Q15375 998 aa12.94□□□□□ -0.34
USP4-204ENST00000416417 ME3Q16798 604 aa12.94□□□□□ -0.34
USP4-204ENST00000416417 XKR9Q5GH70 373 aa12.94□□□□□ -0.34
USP4-204ENST00000416417 RARS2Q5T160 578 aaKnown RBP12.94□□□□□ -0.34
USP4-204ENST00000416417 IER5LQ5T953 404 aa12.94□□□□□ -0.34
USP4-204ENST00000416417 GLB1LQ6UWU2 654 aa12.94□□□□□ -0.34
USP4-204ENST00000416417 TMEM184AQ6ZMB5 413 aa12.94□□□□□ -0.34
USP4-204ENST00000416417 AGMOQ6ZNB7 445 aa12.94□□□□□ -0.34
USP4-204ENST00000416417 TPH2Q8IWU9 490 aa12.94□□□□□ -0.34
USP4-204ENST00000416417 SLC7A3Q8WY07 619 aa12.94□□□□□ -0.34
USP4-204ENST00000416417 PBXIP1Q96AQ6 731 aa12.94□□□□□ -0.34
USP4-204ENST00000416417 TMEM169Q96HH4 297 aa12.94□□□□□ -0.34
USP4-204ENST00000416417 VN1R3Q9BXE9 311 aa12.94□□□□□ -0.34
USP4-204ENST00000416417 MRPL9Q9BYD2 267 aaKnown RBP12.94□□□□□ -0.34
USP4-204ENST00000416417 DHX33Q9H6R0 707 aaKnown RBP12.94□□□□□ -0.34
USP4-204ENST00000416417 PCDHB2Q9Y5E7 798 aa12.94□□□□□ -0.34
USP4-204ENST00000416417 JAK2O60674 1132 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 DDHD2O94830 711 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 GALTP07902 379 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 SRGAP2BP0DMP2 458 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 GCFC2P16383 781 aaKnown RBP12.93□□□□□ -0.34
USP4-204ENST00000416417 XBP1P17861 261 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 YWHABP31946 246 aaKnown RBP12.93□□□□□ -0.34
USP4-204ENST00000416417 CDC42EP1Q00587 391 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 SPIRE1Q08AE8 756 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 EMC2Q15006 297 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 UBXN11Q5T124 520 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 RNF149Q8NC42 400 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 PSPC1Q8WXF1 523 aaKnown RBP12.93□□□□□ -0.34
USP4-204ENST00000416417 TNFRSF25Q93038 417 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 IGSF21Q96ID5 467 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 PHOX2BQ99453 314 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 INO80BQ9C086 356 aaPredicted RBP12.93□□□□□ -0.34
USP4-204ENST00000416417 ZBP1Q9H171 429 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 SMOC2Q9H3U7 446 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 POMKQ9H5K3 350 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 AGPAT5Q9NUQ2 364 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 POMCP01189 267 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 NEFLP07196 543 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 HOXA11P31270 313 aaPredicted RBP12.93□□□□□ -0.34
USP4-204ENST00000416417 KRT2P35908 639 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 NHLH1Q02575 133 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 C4orf19Q8IY42 314 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 FAM177A1Q8N128 213 aaPredicted RBP12.93□□□□□ -0.34
USP4-204ENST00000416417 CASP10Q92851 521 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 CPB2Q96IY4 423 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 MFSD14AQ96MC6 490 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 JPH2Q9BR39 696 aaPredicted RBP12.93□□□□□ -0.34
USP4-204ENST00000416417 TRAIPQ9BWF2 469 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 RNF39Q9H2S5 420 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 XPNPEP1Q9NQW7 623 aa12.93□□□□□ -0.34
USP4-204ENST00000416417 TECTAO75443 2155 aa12.92□□□□□ -0.34
USP4-204ENST00000416417 BTBD18B2RXH4 712 aa12.92□□□□□ -0.34
USP4-204ENST00000416417 C2CD4DB7Z1M9 353 aa12.92□□□□□ -0.34
USP4-204ENST00000416417 ZNF623O75123 536 aa12.92□□□□□ -0.34
USP4-204ENST00000416417 SLITRK3O94933 977 aa12.92□□□□□ -0.34
USP4-204ENST00000416417 PDGFBP01127 241 aaPredicted RBP12.92□□□□□ -0.34
USP4-204ENST00000416417 MYBP10242 640 aa12.92□□□□□ -0.34
USP4-204ENST00000416417 ATP2B1P20020 1258 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms