RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 TRAIPQ9BWF2 469 aa16.45■□□□□ 0.22
LIMS4-201ENST00000413601 TMEM117Q9H0C3 514 aa16.45■□□□□ 0.22
LIMS4-201ENST00000413601 BHMT2Q9H2M3 363 aa16.45■□□□□ 0.22
LIMS4-201ENST00000413601 ALG13Q9NP73 1137 aaKnown RBP16.45■□□□□ 0.22
LIMS4-201ENST00000413601 FAM105AQ9NUU6 356 aa16.45■□□□□ 0.22
LIMS4-201ENST00000413601 DDX19AQ9NUU7 478 aaKnown RBP16.45■□□□□ 0.22
LIMS4-201ENST00000413601 THEGQ9P2T0 379 aa16.45■□□□□ 0.22
LIMS4-201ENST00000413601 STK24Q9Y6E0 443 aa16.45■□□□□ 0.22
LIMS4-201ENST00000413601 MYO7AQ13402 2215 aa16.45■□□□□ 0.22
LIMS4-201ENST00000413601 TDRD15B5MCY1 1934 aaKnown RBP16.45■□□□□ 0.22
LIMS4-201ENST00000413601 VWA3AA6NCI4 1184 aa16.44■□□□□ 0.22
LIMS4-201ENST00000413601 INO80B-WBP1J3KQ70 363 aa16.44■□□□□ 0.22
LIMS4-201ENST00000413601 ERLIN2O94905 339 aa16.44■□□□□ 0.22
LIMS4-201ENST00000413601 CYP11B2P19099 503 aa16.44■□□□□ 0.22
LIMS4-201ENST00000413601 SYT1P21579 422 aa16.44■□□□□ 0.22
LIMS4-201ENST00000413601 HOXA11P31270 313 aaPredicted RBP16.44■□□□□ 0.22
LIMS4-201ENST00000413601 POU5F1BQ06416 359 aa16.44■□□□□ 0.22
LIMS4-201ENST00000413601 LRRC55Q6ZSA7 311 aa16.44■□□□□ 0.22
LIMS4-201ENST00000413601 IFNLR1Q8IU57 520 aaPredicted RBP16.44■□□□□ 0.22
LIMS4-201ENST00000413601 ABI1Q8IZP0 508 aa16.44■□□□□ 0.22
LIMS4-201ENST00000413601 KLHL23Q8NBE8 558 aa16.44■□□□□ 0.22
LIMS4-201ENST00000413601 HELQQ8TDG4 1101 aa16.44■□□□□ 0.22
LIMS4-201ENST00000413601 LPPQ93052 612 aa16.44■□□□□ 0.22
LIMS4-201ENST00000413601 P2RX5Q93086 422 aa16.44■□□□□ 0.22
LIMS4-201ENST00000413601 SNX21Q969T3 373 aa16.44■□□□□ 0.22
LIMS4-201ENST00000413601 CWH43Q9H720 699 aa16.44■□□□□ 0.22
LIMS4-201ENST00000413601 PLAGL2Q9UPG8 496 aa16.44■□□□□ 0.22
LIMS4-201ENST00000413601 LRRIQ4A6NIV6 560 aa16.43■□□□□ 0.22
LIMS4-201ENST00000413601 MEIS3P2A8K0S8 358 aa16.43■□□□□ 0.22
LIMS4-201ENST00000413601 E9PMD0 336 aa16.43■□□□□ 0.22
LIMS4-201ENST00000413601 CSPG5O95196 566 aa16.43■□□□□ 0.22
LIMS4-201ENST00000413601 ITGB1P05556 798 aa16.43■□□□□ 0.22
LIMS4-201ENST00000413601 SKIP12755 728 aa16.43■□□□□ 0.22
LIMS4-201ENST00000413601 TFF2Q03403 129 aa16.43■□□□□ 0.22
LIMS4-201ENST00000413601 MBTD1Q05BQ5 628 aa16.43■□□□□ 0.22
LIMS4-201ENST00000413601 ZRSR1Q15695 479 aaKnown RBP16.43■□□□□ 0.22
LIMS4-201ENST00000413601 NAALADL2Q58DX5 795 aa16.43■□□□□ 0.22
LIMS4-201ENST00000413601 ARL6IP4Q66PJ3 421 aaKnown RBP16.43■□□□□ 0.22
LIMS4-201ENST00000413601 CPB2Q96IY4 423 aa16.43■□□□□ 0.22
LIMS4-201ENST00000413601 LMAN2LQ9H0V9 348 aa16.43■□□□□ 0.22
LIMS4-201ENST00000413601 POLD4Q9HCU8 107 aa16.43■□□□□ 0.22
LIMS4-201ENST00000413601 AAASQ9NRG9 546 aa16.43■□□□□ 0.22
LIMS4-201ENST00000413601 PCDHB2Q9Y5E7 798 aa16.43■□□□□ 0.22
LIMS4-201ENST00000413601 PCDHB12Q9Y5F1 795 aa16.43■□□□□ 0.22
LIMS4-201ENST00000413601 TSPAN1O60635 241 aa16.42■□□□□ 0.22
LIMS4-201ENST00000413601 ZNF623O75123 536 aa16.42■□□□□ 0.22
LIMS4-201ENST00000413601 DNAJB1P25685 340 aa16.42■□□□□ 0.22
LIMS4-201ENST00000413601 RAB27AP51159 221 aa16.42■□□□□ 0.22
LIMS4-201ENST00000413601 TIGD5Q53EQ6 642 aa16.42■□□□□ 0.22
LIMS4-201ENST00000413601 UBXN11Q5T124 520 aa16.42■□□□□ 0.22
LIMS4-201ENST00000413601 KCNK18Q7Z418 384 aa16.42■□□□□ 0.22
LIMS4-201ENST00000413601 LRRC43Q8N309 656 aa16.42■□□□□ 0.22
LIMS4-201ENST00000413601 COLGALT1Q8NBJ5 622 aa16.42■□□□□ 0.22
LIMS4-201ENST00000413601 SPPL3Q8TCT6 385 aa16.42■□□□□ 0.22
LIMS4-201ENST00000413601 ATXN2LQ8WWM7 1075 aaKnown RBP16.42■□□□□ 0.22
LIMS4-201ENST00000413601 BSNDQ8WZ55 320 aa16.42■□□□□ 0.22
LIMS4-201ENST00000413601 NFKBIZQ9BYH8 718 aa16.42■□□□□ 0.22
LIMS4-201ENST00000413601 DNM3Q9UQ16 869 aa16.42■□□□□ 0.22
LIMS4-201ENST00000413601 DLL1O00548 723 aa16.41■□□□□ 0.22
LIMS4-201ENST00000413601 EYA4O95677 639 aa16.41■□□□□ 0.22
LIMS4-201ENST00000413601 LAG3P18627 525 aa16.41■□□□□ 0.22
LIMS4-201ENST00000413601 MRPS5P82675 430 aaKnown RBP16.41■□□□□ 0.22
LIMS4-201ENST00000413601 RESTQ13127 1097 aa16.41■□□□□ 0.22
LIMS4-201ENST00000413601 CAMK1Q14012 370 aa16.41■□□□□ 0.22
LIMS4-201ENST00000413601 PCBP1Q15365 356 aaKnown RBP eCLIP16.41■□□□□ 0.22
LIMS4-201ENST00000413601 SF3A1Q15459 793 aaKnown RBP16.41■□□□□ 0.22
LIMS4-201ENST00000413601 AMHR2Q16671 573 aa16.41■□□□□ 0.22
LIMS4-201ENST00000413601 TCEAL5Q5H9L2 206 aa16.41■□□□□ 0.22
LIMS4-201ENST00000413601 HLA-CQ95604 372 aa16.41■□□□□ 0.22
LIMS4-201ENST00000413601 ASB2Q96Q27 587 aa16.41■□□□□ 0.22
LIMS4-201ENST00000413601 PLIN2Q99541 437 aa16.41■□□□□ 0.22
LIMS4-201ENST00000413601 NSUN3Q9H649 340 aaKnown RBP16.41■□□□□ 0.22
LIMS4-201ENST00000413601 B4GALT5O43286 388 aa16.4■□□□□ 0.22
LIMS4-201ENST00000413601 FGF18O76093 207 aa16.4■□□□□ 0.22
LIMS4-201ENST00000413601 BMP15O95972 392 aa16.4■□□□□ 0.22
LIMS4-201ENST00000413601 ARF4P18085 180 aaPredicted RBP16.4■□□□□ 0.22
LIMS4-201ENST00000413601 AXLP30530 894 aa16.4■□□□□ 0.22
LIMS4-201ENST00000413601 PBX3P40426 434 aa16.4■□□□□ 0.22
LIMS4-201ENST00000413601 NCBP1Q09161 790 aaKnown RBP16.4■□□□□ 0.22
LIMS4-201ENST00000413601 FAM173BQ6P4H8 233 aa16.4■□□□□ 0.22
LIMS4-201ENST00000413601 NOTUMQ6P988 496 aa16.4■□□□□ 0.22
LIMS4-201ENST00000413601 AGMOQ6ZNB7 445 aa16.4■□□□□ 0.22
LIMS4-201ENST00000413601 MRPL10Q7Z7H8 261 aaKnown RBP16.4■□□□□ 0.22
LIMS4-201ENST00000413601 HSCBQ8IWL3 235 aa16.4■□□□□ 0.22
LIMS4-201ENST00000413601 THNSL1Q8IYQ7 743 aa16.4■□□□□ 0.22
LIMS4-201ENST00000413601 POF1BQ8WVV4 589 aa16.4■□□□□ 0.22
LIMS4-201ENST00000413601 PGBD4Q96DM1 585 aa16.4■□□□□ 0.22
LIMS4-201ENST00000413601 PNMA5Q96PV4 448 aa16.4■□□□□ 0.22
LIMS4-201ENST00000413601 COL25A1Q9BXS0 654 aaPredicted RBP16.4■□□□□ 0.22
LIMS4-201ENST00000413601 EIF2AQ9BY44 585 aaKnown RBP16.4■□□□□ 0.22
LIMS4-201ENST00000413601 COG5Q9UP83 839 aa16.4■□□□□ 0.22
LIMS4-201ENST00000413601 MTMR6Q9Y217 621 aa16.4■□□□□ 0.22
LIMS4-201ENST00000413601 INPP5FQ9Y2H2 1132 aa16.4■□□□□ 0.22
LIMS4-201ENST00000413601 CLIC4Q9Y696 253 aa16.4■□□□□ 0.22
LIMS4-201ENST00000413601 BRWD1Q9NSI6 2320 aa16.39■□□□□ 0.21
LIMS4-201ENST00000413601 STX6O43752 255 aa16.39■□□□□ 0.21
LIMS4-201ENST00000413601 OFD1O75665 1012 aa16.39■□□□□ 0.21
LIMS4-201ENST00000413601 GRIN1Q05586 938 aa16.39■□□□□ 0.21
LIMS4-201ENST00000413601 NOMO2Q5JPE7 1267 aa16.39■□□□□ 0.21
LIMS4-201ENST00000413601 TJAP1Q5JTD0 557 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms