RNA–Protein interactions for RNA: ENST00000409747.5

CBX3-203, Transcript of chromobox 3, humanhuman

TSL 1 (best) BASIC

Gene CBX3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-203ENST00000409747 ARID2Q68CP9 1835 aa16.47■□□□□ 0.23
CBX3-203ENST00000409747 ASAP2O43150 1006 aa16.47■□□□□ 0.23
CBX3-203ENST00000409747 ZNF623O75123 536 aa16.47■□□□□ 0.23
CBX3-203ENST00000409747 PLA2G5P39877 138 aa16.47■□□□□ 0.23
CBX3-203ENST00000409747 PBX3P40426 434 aa16.47■□□□□ 0.23
CBX3-203ENST00000409747 SPIRE1Q08AE8 756 aa16.47■□□□□ 0.23
CBX3-203ENST00000409747 SMC1AQ14683 1233 aaKnown RBP16.47■□□□□ 0.23
CBX3-203ENST00000409747 EMC2Q15006 297 aa16.47■□□□□ 0.23
CBX3-203ENST00000409747 CALCRLQ16602 461 aa16.47■□□□□ 0.23
CBX3-203ENST00000409747 XKR9Q5GH70 373 aa16.47■□□□□ 0.23
CBX3-203ENST00000409747 TMC7Q7Z402 723 aa16.47■□□□□ 0.23
CBX3-203ENST00000409747 KSR1Q8IVT5 923 aa16.47■□□□□ 0.23
CBX3-203ENST00000409747 PRPF31Q8WWY3 499 aaKnown RBP16.47■□□□□ 0.23
CBX3-203ENST00000409747 FAM122AQ96E09 287 aa16.47■□□□□ 0.23
CBX3-203ENST00000409747 TMEM169Q96HH4 297 aa16.47■□□□□ 0.23
CBX3-203ENST00000409747 DYDC2Q96IM9 177 aa16.47■□□□□ 0.23
CBX3-203ENST00000409747 WRAP73Q9P2S5 460 aaPredicted RBP16.47■□□□□ 0.23
CBX3-203ENST00000409747 PCDHA12Q9UN75 941 aa16.47■□□□□ 0.23
CBX3-203ENST00000409747 USP15Q9Y4E8 981 aaPredicted RBP16.47■□□□□ 0.23
CBX3-203ENST00000409747 LARGE1O95461 756 aa16.46■□□□□ 0.23
CBX3-203ENST00000409747 BCAR1P56945 870 aa16.46■□□□□ 0.23
CBX3-203ENST00000409747 PCBP1Q15365 356 aaKnown RBP eCLIP16.46■□□□□ 0.23
CBX3-203ENST00000409747 TMEM184AQ6ZMB5 413 aa16.46■□□□□ 0.23
CBX3-203ENST00000409747 DIS3L2Q8IYB7 885 aaKnown RBP16.46■□□□□ 0.23
CBX3-203ENST00000409747 TMEM143Q96AN5 459 aa16.46■□□□□ 0.23
CBX3-203ENST00000409747 CCDC43Q96MW1 224 aaKnown RBP16.46■□□□□ 0.23
CBX3-203ENST00000409747 RGL1Q9NZL6 768 aa16.46■□□□□ 0.23
CBX3-203ENST00000409747 FAM205CA6NFA0 338 aa16.45■□□□□ 0.22
CBX3-203ENST00000409747 NEMFO60524 1076 aa16.45■□□□□ 0.22
CBX3-203ENST00000409747 DTNBO60941 627 aa16.45■□□□□ 0.22
CBX3-203ENST00000409747 CYP4A11Q02928 519 aa16.45■□□□□ 0.22
CBX3-203ENST00000409747 LAMTOR4Q0VGL1 99 aa16.45■□□□□ 0.22
CBX3-203ENST00000409747 CTTNQ14247 550 aaKnown RBP16.45■□□□□ 0.22
CBX3-203ENST00000409747 MTRQ99707 1265 aa16.45■□□□□ 0.22
CBX3-203ENST00000409747 STK39Q9UEW8 545 aa16.45■□□□□ 0.22
CBX3-203ENST00000409747 ZC3H11AO75152 810 aaKnown RBP eCLIP16.45■□□□□ 0.224e-6■■■■□ 25.4
CBX3-203ENST00000409747 SRGAP2CP0DJJ0 459 aa16.45■□□□□ 0.22
CBX3-203ENST00000409747 HOXB8P17481 243 aaPredicted RBP16.45■□□□□ 0.22
CBX3-203ENST00000409747 RNASELQ05823 741 aaKnown RBP16.45■□□□□ 0.22
CBX3-203ENST00000409747 MXD4Q14582 209 aaPredicted RBP16.45■□□□□ 0.22
CBX3-203ENST00000409747 SAFBQ15424 915 aaKnown RBP eCLIP16.45■□□□□ 0.22
CBX3-203ENST00000409747 HERC4Q5GLZ8 1057 aaPredicted RBP16.45■□□□□ 0.22
CBX3-203ENST00000409747 NOMO2Q5JPE7 1267 aa16.45■□□□□ 0.22
CBX3-203ENST00000409747 FERMT3Q86UX7 667 aa16.45■□□□□ 0.22
CBX3-203ENST00000409747 RNF135Q8IUD6 432 aa16.45■□□□□ 0.22
CBX3-203ENST00000409747 TPH2Q8IWU9 490 aa16.45■□□□□ 0.22
CBX3-203ENST00000409747 ZNF579Q8NAF0 562 aaKnown RBP16.45■□□□□ 0.22
CBX3-203ENST00000409747 VN1R2Q8NFZ6 395 aa16.45■□□□□ 0.22
CBX3-203ENST00000409747 URGCPQ8TCY9 931 aa16.45■□□□□ 0.22
CBX3-203ENST00000409747 CASP10Q92851 521 aa16.45■□□□□ 0.22
CBX3-203ENST00000409747 EIF2AK1Q9BQI3 630 aaKnown RBP16.45■□□□□ 0.22
CBX3-203ENST00000409747 PHF7Q9BWX1 381 aaPredicted RBP16.45■□□□□ 0.22
CBX3-203ENST00000409747 TTC12Q9H892 705 aaPredicted RBP16.45■□□□□ 0.22
CBX3-203ENST00000409747 CNTNAP2Q9UHC6 1331 aa16.44■□□□□ 0.22
CBX3-203ENST00000409747 HIDE1A8MVS5 230 aa16.44■□□□□ 0.22
CBX3-203ENST00000409747 BTBD18B2RXH4 712 aa16.44■□□□□ 0.22
CBX3-203ENST00000409747 JAK2O60674 1132 aa16.44■□□□□ 0.22
CBX3-203ENST00000409747 ERLIN2O94905 339 aa16.44■□□□□ 0.22
CBX3-203ENST00000409747 SLITRK3O94933 977 aa16.44■□□□□ 0.22
CBX3-203ENST00000409747 LYPLA2O95372 231 aa16.44■□□□□ 0.22
CBX3-203ENST00000409747 TECP42680 631 aa16.44■□□□□ 0.22
CBX3-203ENST00000409747 KCNC3Q14003 757 aa16.44■□□□□ 0.22
CBX3-203ENST00000409747 GIT2Q14161 759 aa16.44■□□□□ 0.22
CBX3-203ENST00000409747 ANKRD54Q6NXT1 300 aa16.44■□□□□ 0.22
CBX3-203ENST00000409747 MRPL43Q8N983 215 aaKnown RBP16.44■□□□□ 0.22
CBX3-203ENST00000409747 RNF149Q8NC42 400 aa16.44■□□□□ 0.22
CBX3-203ENST00000409747 LPPQ93052 612 aa16.44■□□□□ 0.22
CBX3-203ENST00000409747 BMP2KQ9NSY1 1161 aaPredicted RBP16.44■□□□□ 0.22
CBX3-203ENST00000409747 ANKEF1Q9NU02 776 aa16.44■□□□□ 0.22
CBX3-203ENST00000409747 TBC1D13Q9NVG8 400 aa16.44■□□□□ 0.22
CBX3-203ENST00000409747 PCDHB2Q9Y5E7 798 aa16.44■□□□□ 0.22
CBX3-203ENST00000409747 LOC730098B7Z3J9 87 aa16.43■□□□□ 0.22
CBX3-203ENST00000409747 NCBP1Q09161 790 aaKnown RBP16.43■□□□□ 0.22
CBX3-203ENST00000409747 TFDP1Q14186 410 aa16.43■□□□□ 0.22
CBX3-203ENST00000409747 TMEM87AQ8NBN3 555 aa16.43■□□□□ 0.22
CBX3-203ENST00000409747 CNNM3Q8NE01 707 aa16.43■□□□□ 0.22
CBX3-203ENST00000409747 SUSD6Q92537 303 aa16.43■□□□□ 0.22
CBX3-203ENST00000409747 HSD17B14Q9BPX1 270 aa16.43■□□□□ 0.22
CBX3-203ENST00000409747 MUTYHQ9UIF7 546 aa16.43■□□□□ 0.22
CBX3-203ENST00000409747 INPP5FQ9Y2H2 1132 aa16.43■□□□□ 0.22
CBX3-203ENST00000409747 C2orf71A6NGG8 1288 aa16.42■□□□□ 0.22
CBX3-203ENST00000409747 OFD1O75665 1012 aa16.42■□□□□ 0.22
CBX3-203ENST00000409747 DGAT1O75907 488 aa16.42■□□□□ 0.22
CBX3-203ENST00000409747 AXLP30530 894 aa16.42■□□□□ 0.22
CBX3-203ENST00000409747 CA8P35219 290 aa16.42■□□□□ 0.22
CBX3-203ENST00000409747 TXKP42681 527 aa16.42■□□□□ 0.22
CBX3-203ENST00000409747 RBM10P98175 930 aaKnown RBP16.42■□□□□ 0.22
CBX3-203ENST00000409747 CBX2Q14781 532 aaPredicted RBP16.42■□□□□ 0.22
CBX3-203ENST00000409747 LONRF3Q496Y0 759 aa16.42■□□□□ 0.22
CBX3-203ENST00000409747 TPRNQ4KMQ1 711 aa16.42■□□□□ 0.22
CBX3-203ENST00000409747 LLGL2Q6P1M3 1020 aa16.42■□□□□ 0.22
CBX3-203ENST00000409747 CCDC51Q96ER9 411 aa16.42■□□□□ 0.22
CBX3-203ENST00000409747 UBN1Q9NPG3 1134 aa16.42■□□□□ 0.22
CBX3-203ENST00000409747 KANSL3Q9P2N6 904 aa16.42■□□□□ 0.22
CBX3-203ENST00000409747 LIMCH1Q9UPQ0 1083 aa16.42■□□□□ 0.22
CBX3-203ENST00000409747 NT5C1B-RDH14C9J2C7 533 aa16.42■□□□□ 0.22
CBX3-203ENST00000409747 FOSBP53539 338 aa16.42■□□□□ 0.22
CBX3-203ENST00000409747 POU5F1BQ06416 359 aa16.42■□□□□ 0.22
CBX3-203ENST00000409747 MRPL10Q7Z7H8 261 aaKnown RBP16.42■□□□□ 0.22
CBX3-203ENST00000409747 DDX53Q86TM3 631 aaKnown RBP16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms