RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 NEK9Q8TD19 979 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 EIF2AK1Q9BQI3 630 aaKnown RBP22.68■■□□□ 1.22
CTCF-202ENST00000401394 PABPC3Q9H361 631 aaKnown RBP22.68■■□□□ 1.22
CTCF-202ENST00000401394 SBF2Q86WG5 1849 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 UPP2O95045 317 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 GH1P01241 217 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 PAEPP09466 180 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 NF2P35240 595 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 NEDD9Q14511 834 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 C10orf76Q5T2E6 689 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 NOD2Q9HC29 1040 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 INTS9Q9NV88 658 aaKnown RBP22.68■■□□□ 1.22
CTCF-202ENST00000401394 CTTNBP2NLQ9P2B4 639 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 PYGMP11217 842 aa22.67■■□□□ 1.22
CTCF-202ENST00000401394 VCAM1P19320 739 aa22.67■■□□□ 1.22
CTCF-202ENST00000401394 TNFAIP3P21580 790 aa22.67■■□□□ 1.22
CTCF-202ENST00000401394 GDAP1Q8TB36 358 aa22.67■■□□□ 1.22
CTCF-202ENST00000401394 PNMA3Q9UL41 463 aa22.67■■□□□ 1.22
CTCF-202ENST00000401394 ATP6V1G2O95670 118 aa22.67■■□□□ 1.22
CTCF-202ENST00000401394 RPA1P27694 616 aa22.67■■□□□ 1.22
CTCF-202ENST00000401394 ARHGEF19Q8IW93 802 aa22.67■■□□□ 1.22
CTCF-202ENST00000401394 ANKRD42Q8N9B4 389 aa22.67■■□□□ 1.22
CTCF-202ENST00000401394 LMBR1Q8WVP7 490 aa22.67■■□□□ 1.22
CTCF-202ENST00000401394 ACTR5Q9H9F9 607 aaPredicted RBP22.67■■□□□ 1.22
CTCF-202ENST00000401394 RABGAP1Q9Y3P9 1069 aa22.67■■□□□ 1.22
CTCF-202ENST00000401394 FTLP02792 175 aaPredicted RBP22.66■■□□□ 1.22
CTCF-202ENST00000401394 PAX7P23759 505 aa22.66■■□□□ 1.22
CTCF-202ENST00000401394 VPS41P49754 854 aa22.66■■□□□ 1.22
CTCF-202ENST00000401394 MAPK7Q13164 816 aa22.66■■□□□ 1.22
CTCF-202ENST00000401394 C2CD6Q53TS8 623 aa22.66■■□□□ 1.22
CTCF-202ENST00000401394 ADAM33Q9BZ11 813 aa22.66■■□□□ 1.22
CTCF-202ENST00000401394 FGFR1OP2Q9NVK5 253 aa22.66■■□□□ 1.22
CTCF-202ENST00000401394 SPATA31A5Q5VU36 1347 aa22.66■■□□□ 1.22
CTCF-202ENST00000401394 SPATA31A7Q8IWB4 1347 aa22.66■■□□□ 1.22
CTCF-202ENST00000401394 UBOX5O94941 541 aa22.66■■□□□ 1.22
CTCF-202ENST00000401394 GCFC2P16383 781 aaKnown RBP22.66■■□□□ 1.22
CTCF-202ENST00000401394 PTGIRP43119 386 aa22.66■■□□□ 1.22
CTCF-202ENST00000401394 JAG1P78504 1218 aa22.66■■□□□ 1.22
CTCF-202ENST00000401394 PPP4R3CPQ6ZMV5 832 aa22.66■■□□□ 1.22
CTCF-202ENST00000401394 BARGINQ6ZT62 677 aa22.66■■□□□ 1.22
CTCF-202ENST00000401394 PRUNE1Q86TP1 453 aa22.66■■□□□ 1.22
CTCF-202ENST00000401394 DYDC2Q96IM9 177 aa22.66■■□□□ 1.22
CTCF-202ENST00000401394 INTS2Q9H0H0 1204 aaKnown RBP22.66■■□□□ 1.22
CTCF-202ENST00000401394 hCG_1984214I3L0E3 225 aa22.65■■□□□ 1.22
CTCF-202ENST00000401394 IL1R1P14778 569 aa22.65■■□□□ 1.22
CTCF-202ENST00000401394 MYO1EQ12965 1108 aa22.65■■□□□ 1.22
CTCF-202ENST00000401394 XRCC4Q13426 336 aa22.65■■□□□ 1.22
CTCF-202ENST00000401394 WLSQ5T9L3 541 aa22.65■■□□□ 1.22
CTCF-202ENST00000401394 FAM196AQ6ZSG2 479 aa22.65■■□□□ 1.22
CTCF-202ENST00000401394 SYCE1Q8N0S2 351 aa22.65■■□□□ 1.22
CTCF-202ENST00000401394 ZNF713Q8N859 430 aaPredicted RBP22.65■■□□□ 1.22
CTCF-202ENST00000401394 FERP16591 822 aa22.65■■□□□ 1.22
CTCF-202ENST00000401394 MMP13P45452 471 aa22.65■■□□□ 1.22
CTCF-202ENST00000401394 PLCB4Q15147 1175 aa22.65■■□□□ 1.22
CTCF-202ENST00000401394 FOXR2Q6PJQ5 311 aa22.65■■□□□ 1.22
CTCF-202ENST00000401394 SIAH1Q8IUQ4 282 aa22.65■■□□□ 1.22
CTCF-202ENST00000401394 UBE2TQ9NPD8 197 aaPredicted RBP22.65■■□□□ 1.22
CTCF-202ENST00000401394 GAKO14976 1311 aa22.65■■□□□ 1.22
CTCF-202ENST00000401394 PITPNM2Q9BZ72 1349 aa22.65■■□□□ 1.22
CTCF-202ENST00000401394 MAST2Q6P0Q8 1798 aa22.65■■□□□ 1.22
CTCF-202ENST00000401394 DDX39AO00148 427 aaKnown RBP22.65■■□□□ 1.22
CTCF-202ENST00000401394 COMTP21964 271 aa22.65■■□□□ 1.22
CTCF-202ENST00000401394 SLFN13Q68D06 897 aa22.65■■□□□ 1.22
CTCF-202ENST00000401394 C1orf54Q8WWF1 131 aa22.65■■□□□ 1.22
CTCF-202ENST00000401394 SYT11Q9BT88 431 aa22.65■■□□□ 1.22
CTCF-202ENST00000401394 TBK1Q9UHD2 729 aa22.65■■□□□ 1.22
CTCF-202ENST00000401394 GGA2Q9UJY4 613 aa22.65■■□□□ 1.22
CTCF-202ENST00000401394 FAM13AO94988 1023 aa22.64■■□□□ 1.22
CTCF-202ENST00000401394 ZNF76P36508 570 aa22.64■■□□□ 1.22
CTCF-202ENST00000401394 CDC42EP5Q6NZY7 148 aa22.64■■□□□ 1.22
CTCF-202ENST00000401394 LLGL2Q6P1M3 1020 aa22.64■■□□□ 1.22
CTCF-202ENST00000401394 CCDC137Q6PK04 289 aaKnown RBP22.64■■□□□ 1.22
CTCF-202ENST00000401394 ATG4AQ8WYN0 398 aa22.64■■□□□ 1.22
CTCF-202ENST00000401394 PCDHB18PQ96TA0 734 aa22.64■■□□□ 1.22
CTCF-202ENST00000401394 VAV3Q9UKW4 847 aa22.64■■□□□ 1.22
CTCF-202ENST00000401394 DDTLA6NHG4 134 aaPredicted RBP22.64■■□□□ 1.21
CTCF-202ENST00000401394 RAB17Q9H0T7 212 aa22.64■■□□□ 1.21
CTCF-202ENST00000401394 A1CFQ9NQ94 594 aaKnown RBP22.64■■□□□ 1.21
CTCF-202ENST00000401394 STK38LQ9Y2H1 464 aa22.64■■□□□ 1.21
CTCF-202ENST00000401394 CNTNAP4Q9C0A0 1308 aa22.64■■□□□ 1.21
CTCF-202ENST00000401394 MGRN1O60291 552 aa22.63■■□□□ 1.21
CTCF-202ENST00000401394 TMEM253P0C7T8 217 aa22.63■■□□□ 1.21
CTCF-202ENST00000401394 GCLMP48507 274 aa22.63■■□□□ 1.21
CTCF-202ENST00000401394 MPP2Q14168 576 aa22.63■■□□□ 1.21
CTCF-202ENST00000401394 LACTB2Q53H82 288 aaPredicted RBP22.63■■□□□ 1.21
CTCF-202ENST00000401394 TACO1Q9BSH4 297 aaKnown RBP22.63■■□□□ 1.21
CTCF-202ENST00000401394 STK33Q9BYT3 514 aa22.63■■□□□ 1.21
CTCF-202ENST00000401394 CHKAP35790 457 aa22.63■■□□□ 1.21
CTCF-202ENST00000401394 AUHQ13825 339 aaKnown RBP22.63■■□□□ 1.21
CTCF-202ENST00000401394 EPC2Q52LR7 807 aa22.63■■□□□ 1.21
CTCF-202ENST00000401394 EXOC3L1Q86VI1 746 aa22.63■■□□□ 1.21
CTCF-202ENST00000401394 EIF1ADQ8N9N8 165 aaKnown RBP22.63■■□□□ 1.21
CTCF-202ENST00000401394 CCDC63Q8NA47 563 aa22.63■■□□□ 1.21
CTCF-202ENST00000401394 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP22.63■■□□□ 1.21
CTCF-202ENST00000401394 TRIM7Q9C029 511 aa22.63■■□□□ 1.21
CTCF-202ENST00000401394 TRPC6Q9Y210 931 aa22.63■■□□□ 1.21
CTCF-202ENST00000401394 TCP11X1B4DZS4 312 aa22.62■■□□□ 1.21
CTCF-202ENST00000401394 PSMC2P35998 433 aaKnown RBP22.62■■□□□ 1.21
CTCF-202ENST00000401394 CCDC105Q8IYK2 499 aa22.62■■□□□ 1.21
CTCF-202ENST00000401394 WDR18Q9BV38 432 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms