RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 CDH23Q9H251 3354 aa24.04■■□□□ 1.44
CLN3-207ENST00000395653 INO80B-WBP1J3KQ70 363 aa24.03■■□□□ 1.44
CLN3-207ENST00000395653 ARHGEF15O94989 841 aa24.03■■□□□ 1.44
CLN3-207ENST00000395653 BSNDQ8WZ55 320 aa24.03■■□□□ 1.44
CLN3-207ENST00000395653 RAD54LQ92698 747 aa24.03■■□□□ 1.44
CLN3-207ENST00000395653 ZNF689Q96CS4 500 aaPredicted RBP24.03■■□□□ 1.44
CLN3-207ENST00000395653 IFT74Q96LB3 600 aa24.03■■□□□ 1.44
CLN3-207ENST00000395653 DRC1Q96MC2 740 aa24.03■■□□□ 1.44
CLN3-207ENST00000395653 C2orf40Q9H1Z8 148 aa24.03■■□□□ 1.44
CLN3-207ENST00000395653 PCDHB7Q9Y5E2 793 aa24.03■■□□□ 1.44
CLN3-207ENST00000395653 A0A0U1RQF3 1178 aa24.02■■□□□ 1.44
CLN3-207ENST00000395653 LINC01553A4QN01 128 aa24.02■■□□□ 1.44
CLN3-207ENST00000395653 HIP1RO75146 1068 aa24.02■■□□□ 1.44
CLN3-207ENST00000395653 ERLIN2O94905 339 aa24.02■■□□□ 1.44
CLN3-207ENST00000395653 ZBTB8OSQ8IWT0 167 aa24.02■■□□□ 1.44
CLN3-207ENST00000395653 DAW1Q8N136 415 aa24.02■■□□□ 1.44
CLN3-207ENST00000395653 LARP4BQ92615 738 aaKnown RBP24.02■■□□□ 1.44
CLN3-207ENST00000395653 ADGRA3Q8IWK6 1321 aa24.02■■□□□ 1.44
CLN3-207ENST00000395653 CUTAO60888 179 aa24.01■■□□□ 1.43
CLN3-207ENST00000395653 MAPK7Q13164 816 aa24.01■■□□□ 1.43
CLN3-207ENST00000395653 GRIN2CQ14957 1233 aa24.01■■□□□ 1.43
CLN3-207ENST00000395653 TWF2Q6IBS0 349 aaKnown RBP24.01■■□□□ 1.43
CLN3-207ENST00000395653 ECHDC2Q86YB7 292 aa24.01■■□□□ 1.43
CLN3-207ENST00000395653 GUCD1Q96NT3 240 aa24.01■■□□□ 1.43
CLN3-207ENST00000395653 C17orf75Q9HAS0 396 aa24.01■■□□□ 1.43
CLN3-207ENST00000395653 STK17AQ9UEE5 414 aa24.01■■□□□ 1.43
CLN3-207ENST00000395653 RCOR1Q9UKL0 485 aa24.01■■□□□ 1.43
CLN3-207ENST00000395653 TSPAN1O60635 241 aa24.01■■□□□ 1.43
CLN3-207ENST00000395653 AXLP30530 894 aa24.01■■□□□ 1.43
CLN3-207ENST00000395653 HOXA11P31270 313 aaPredicted RBP24.01■■□□□ 1.43
CLN3-207ENST00000395653 DDIT3P35638 169 aa24.01■■□□□ 1.43
CLN3-207ENST00000395653 NUCB2P80303 420 aa24.01■■□□□ 1.43
CLN3-207ENST00000395653 NCBP1Q09161 790 aaKnown RBP24.01■■□□□ 1.43
CLN3-207ENST00000395653 AMHR2Q16671 573 aa24.01■■□□□ 1.43
CLN3-207ENST00000395653 DEPTORQ8TB45 409 aa24.01■■□□□ 1.43
CLN3-207ENST00000395653 PRIMPOLQ96LW4 560 aa24.01■■□□□ 1.43
CLN3-207ENST00000395653 POLD4Q9HCU8 107 aa24.01■■□□□ 1.43
CLN3-207ENST00000395653 EOMESO95936 686 aa24■■□□□ 1.43
CLN3-207ENST00000395653 SKIP12755 728 aa24■■□□□ 1.43
CLN3-207ENST00000395653 IBSPP21815 317 aaPredicted RBP24■■□□□ 1.43
CLN3-207ENST00000395653 RAB27AP51159 221 aa24■■□□□ 1.43
CLN3-207ENST00000395653 KRT85P78386 507 aa24■■□□□ 1.43
CLN3-207ENST00000395653 RRAGBQ5VZM2 374 aa24■■□□□ 1.43
CLN3-207ENST00000395653 PPP4R3CPQ6ZMV5 832 aa24■■□□□ 1.43
CLN3-207ENST00000395653 CCDC73Q6ZRK6 1079 aa24■■□□□ 1.43
CLN3-207ENST00000395653 GPBP1Q86WP2 473 aa24■■□□□ 1.43
CLN3-207ENST00000395653 CMTR2Q8IYT2 770 aaKnown RBP24■■□□□ 1.43
CLN3-207ENST00000395653 CCDC51Q96ER9 411 aa24■■□□□ 1.43
CLN3-207ENST00000395653 TGS1Q96RS0 853 aaKnown RBP24■■□□□ 1.43
CLN3-207ENST00000395653 FZD8Q9H461 694 aa24■■□□□ 1.43
CLN3-207ENST00000395653 PRMT7Q9NVM4 692 aaPredicted RBP24■■□□□ 1.43
CLN3-207ENST00000395653 CHD7Q9P2D1 2997 aa23.99■■□□□ 1.43
CLN3-207ENST00000395653 HOXA2O43364 376 aa23.99■■□□□ 1.43
CLN3-207ENST00000395653 ME1P48163 572 aa23.99■■□□□ 1.43
CLN3-207ENST00000395653 ERVK-21P61565 698 aa23.99■■□□□ 1.43
CLN3-207ENST00000395653 DMP1Q13316 513 aaPredicted RBP23.99■■□□□ 1.43
CLN3-207ENST00000395653 BTG3Q14201 252 aaPredicted RBP23.99■■□□□ 1.43
CLN3-207ENST00000395653 MCM6Q14566 821 aa23.99■■□□□ 1.43
CLN3-207ENST00000395653 FAM187BQ17R55 369 aa23.99■■□□□ 1.43
CLN3-207ENST00000395653 ARSHQ5FYA8 562 aa23.99■■□□□ 1.43
CLN3-207ENST00000395653 AXDND1Q5T1B0 1012 aaPredicted RBP23.99■■□□□ 1.43
CLN3-207ENST00000395653 ZNF598Q86UK7 904 aaKnown RBP23.99■■□□□ 1.43
CLN3-207ENST00000395653 FIBCD1Q8N539 461 aa23.99■■□□□ 1.43
CLN3-207ENST00000395653 CDX2Q99626 313 aaPredicted RBP23.99■■□□□ 1.43
CLN3-207ENST00000395653 FAM105AQ9NUU6 356 aa23.99■■□□□ 1.43
CLN3-207ENST00000395653 ODF2LQ9ULJ1 636 aa23.99■■□□□ 1.43
CLN3-207ENST00000395653 ZNF623O75123 536 aa23.98■■□□□ 1.43
CLN3-207ENST00000395653 EFNA5P52803 228 aa23.98■■□□□ 1.43
CLN3-207ENST00000395653 PEX3P56589 373 aa23.98■■□□□ 1.43
CLN3-207ENST00000395653 RAD51AP2Q09MP3 1159 aa23.98■■□□□ 1.43
CLN3-207ENST00000395653 DHX8Q14562 1220 aaKnown RBP23.98■■□□□ 1.43
CLN3-207ENST00000395653 NAALADL2Q58DX5 795 aa23.98■■□□□ 1.43
CLN3-207ENST00000395653 NOTUMQ6P988 496 aa23.98■■□□□ 1.43
CLN3-207ENST00000395653 SHC4Q6S5L8 630 aa23.98■■□□□ 1.43
CLN3-207ENST00000395653 SAMD11Q96NU1 681 aa23.98■■□□□ 1.43
CLN3-207ENST00000395653 CCDC113Q9H0I3 377 aa23.98■■□□□ 1.43
CLN3-207ENST00000395653 KCNG1Q9UIX4 513 aa23.98■■□□□ 1.43
CLN3-207ENST00000395653 PCDHA7Q9UN72 937 aa23.98■■□□□ 1.43
CLN3-207ENST00000395653 ATF7P17544 494 aaPredicted RBP23.97■■□□□ 1.43
CLN3-207ENST00000395653 ARF4P18085 180 aaPredicted RBP23.97■■□□□ 1.43
CLN3-207ENST00000395653 NPTX2P47972 431 aa23.97■■□□□ 1.43
CLN3-207ENST00000395653 MAPK6Q16659 721 aa23.97■■□□□ 1.43
CLN3-207ENST00000395653 SPRED2Q7Z698 418 aa23.97■■□□□ 1.43
CLN3-207ENST00000395653 ARNTL2Q8WYA1 636 aa23.97■■□□□ 1.43
CLN3-207ENST00000395653 KIFC3Q9BVG8 833 aa23.97■■□□□ 1.43
CLN3-207ENST00000395653 PRDM12Q9H4Q4 367 aa23.97■■□□□ 1.43
CLN3-207ENST00000395653 CERS4Q9HA82 394 aa23.97■■□□□ 1.43
CLN3-207ENST00000395653 PLS3P13797 630 aa23.96■■□□□ 1.43
CLN3-207ENST00000395653 NCLP19338 710 aaKnown RBP23.96■■□□□ 1.43
CLN3-207ENST00000395653 STAT6P42226 847 aa23.96■■□□□ 1.43
CLN3-207ENST00000395653 GATMP50440 423 aa23.96■■□□□ 1.43
CLN3-207ENST00000395653 UBXN11Q5T124 520 aa23.96■■□□□ 1.43
CLN3-207ENST00000395653 LEO1Q8WVC0 666 aaPredicted RBP23.96■■□□□ 1.43
CLN3-207ENST00000395653 SPIRE2Q8WWL2 714 aa23.96■■□□□ 1.43
CLN3-207ENST00000395653 CPB2Q96IY4 423 aa23.96■■□□□ 1.43
CLN3-207ENST00000395653 REEP2Q9BRK0 252 aa23.96■■□□□ 1.43
CLN3-207ENST00000395653 NTPCRQ9BSD7 190 aaKnown RBP23.96■■□□□ 1.43
CLN3-207ENST00000395653 TMEM117Q9H0C3 514 aa23.96■■□□□ 1.43
CLN3-207ENST00000395653 RBM19Q9Y4C8 960 aaKnown RBP23.96■■□□□ 1.43
CLN3-207ENST00000395653 PCDHB2Q9Y5E7 798 aa23.96■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms