RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 SYT2Q8N9I0 419 aaPredicted RBP11.23□□□□□ -0.61
VPS53-202ENST00000389040 SPOCK2Q92563 424 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 LBHD1Q9BQE6 289 aaPredicted RBP11.23□□□□□ -0.61
VPS53-202ENST00000389040 RNF39Q9H2S5 420 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 PAXBP1Q9Y5B6 917 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 DNAH12Q6ZR08 3092 aa11.22□□□□□ -0.61
VPS53-202ENST00000389040 ARHGEF35A5YM69 484 aa11.22□□□□□ -0.61
VPS53-202ENST00000389040 TRIM43BA6NCK2 446 aa11.22□□□□□ -0.61
VPS53-202ENST00000389040 RIOK3O14730 519 aaKnown RBP11.22□□□□□ -0.61
VPS53-202ENST00000389040 ABCB7O75027 752 aa11.22□□□□□ -0.61
VPS53-202ENST00000389040 CYP11B2P19099 503 aa11.22□□□□□ -0.61
VPS53-202ENST00000389040 SCP2P22307 547 aa11.22□□□□□ -0.61
VPS53-202ENST00000389040 SPAG1Q07617 926 aa11.22□□□□□ -0.61
VPS53-202ENST00000389040 GOLGA8FQ08AF8 430 aa11.22□□□□□ -0.61
VPS53-202ENST00000389040 GOLGA8DPQ0D2H9 430 aa11.22□□□□□ -0.61
VPS53-202ENST00000389040 GRB10Q13322 594 aa11.22□□□□□ -0.61
VPS53-202ENST00000389040 PCBP1Q15365 356 aaKnown RBP eCLIP11.22□□□□□ -0.61
VPS53-202ENST00000389040 FILIP1LQ4L180 1135 aa11.22□□□□□ -0.61
VPS53-202ENST00000389040 RPUSD2Q8IZ73 545 aaKnown RBP11.22□□□□□ -0.61
VPS53-202ENST00000389040 ADSSL1Q8N142 457 aa11.22□□□□□ -0.61
VPS53-202ENST00000389040 METTL13Q8N6R0 699 aa11.22□□□□□ -0.61
VPS53-202ENST00000389040 PIGOQ8TEQ8 1089 aa11.22□□□□□ -0.61
VPS53-202ENST00000389040 TRIM43Q96BQ3 446 aaPredicted RBP11.22□□□□□ -0.61
VPS53-202ENST00000389040 PPP1R13BQ96KQ4 1090 aa11.22□□□□□ -0.61
VPS53-202ENST00000389040 C7orf25Q9BPX7 421 aa11.22□□□□□ -0.61
VPS53-202ENST00000389040 TRIM9Q9C026 710 aa11.22□□□□□ -0.61
VPS53-202ENST00000389040 C17orf75Q9HAS0 396 aa11.22□□□□□ -0.61
VPS53-202ENST00000389040 ATP6V0A4Q9HBG4 840 aa11.22□□□□□ -0.61
VPS53-202ENST00000389040 LIMA1Q9UHB6 759 aaKnown RBP11.22□□□□□ -0.61
VPS53-202ENST00000389040 MAPK8IP1Q9UQF2 711 aa11.22□□□□□ -0.61
VPS53-202ENST00000389040 RSPH10B2B2RC85 870 aa11.21□□□□□ -0.61
VPS53-202ENST00000389040 KIF2AO00139 706 aaPredicted RBP11.21□□□□□ -0.61
VPS53-202ENST00000389040 TEX33O43247 280 aa11.21□□□□□ -0.61
VPS53-202ENST00000389040 CCP110O43303 1012 aa11.21□□□□□ -0.61
VPS53-202ENST00000389040 IQCF3P0C7M6 154 aa11.21□□□□□ -0.61
VPS53-202ENST00000389040 RSPH10BP0C881 870 aa11.21□□□□□ -0.61
VPS53-202ENST00000389040 THPOP40225 353 aa11.21□□□□□ -0.61
VPS53-202ENST00000389040 ZNF200P98182 395 aaPredicted RBP11.21□□□□□ -0.61
VPS53-202ENST00000389040 AMPD3Q01432 767 aa11.21□□□□□ -0.61
VPS53-202ENST00000389040 STIM1Q13586 685 aa11.21□□□□□ -0.61
VPS53-202ENST00000389040 PADI6Q6TGC4 694 aa11.21□□□□□ -0.61
VPS53-202ENST00000389040 ZNF410Q86VK4 478 aa11.21□□□□□ -0.61
VPS53-202ENST00000389040 TMEM139Q8IV31 216 aa11.21□□□□□ -0.61
VPS53-202ENST00000389040 TC2NQ8N9U0 490 aa11.21□□□□□ -0.61
VPS53-202ENST00000389040 CCDC47Q96A33 483 aaKnown RBP11.21□□□□□ -0.61
VPS53-202ENST00000389040 PNMA5Q96PV4 448 aa11.21□□□□□ -0.61
VPS53-202ENST00000389040 BHMT2Q9H2M3 363 aa11.21□□□□□ -0.61
VPS53-202ENST00000389040 PRDM5Q9NQX1 630 aaPredicted RBP11.21□□□□□ -0.61
VPS53-202ENST00000389040 ARHGAP6O43182 974 aa11.21□□□□□ -0.62
VPS53-202ENST00000389040 GUCY2CP25092 1073 aa11.21□□□□□ -0.62
VPS53-202ENST00000389040 PBX1P40424 430 aa11.21□□□□□ -0.62
VPS53-202ENST00000389040 NPEPPSP55786 919 aa11.21□□□□□ -0.62
VPS53-202ENST00000389040 PPIGQ13427 754 aaKnown RBP eCLIP11.21□□□□□ -0.625e-7■■□□□ 12.4
VPS53-202ENST00000389040 KRT31Q15323 416 aa11.21□□□□□ -0.62
VPS53-202ENST00000389040 ECM1Q16610 540 aa11.21□□□□□ -0.62
VPS53-202ENST00000389040 PLA2G4FQ68DD2 849 aa11.21□□□□□ -0.62
VPS53-202ENST00000389040 LRRC8DQ7L1W4 858 aa11.21□□□□□ -0.62
VPS53-202ENST00000389040 ANKRD20A12PQ8NF67 263 aa11.21□□□□□ -0.62
VPS53-202ENST00000389040 DNAJB3Q8WWF6 145 aa11.21□□□□□ -0.62
VPS53-202ENST00000389040 PSPC1Q8WXF1 523 aaKnown RBP11.21□□□□□ -0.62
VPS53-202ENST00000389040 DHX38Q92620 1227 aaKnown RBP11.21□□□□□ -0.62
VPS53-202ENST00000389040 KIFAP3Q92845 792 aa11.21□□□□□ -0.62
VPS53-202ENST00000389040 BAG1Q99933 345 aaPredicted RBP11.21□□□□□ -0.62
VPS53-202ENST00000389040 NFKBIZQ9BYH8 718 aa11.21□□□□□ -0.62
VPS53-202ENST00000389040 GTPBP4Q9BZE4 634 aaKnown RBP11.21□□□□□ -0.62
VPS53-202ENST00000389040 INO80BQ9C086 356 aaPredicted RBP11.21□□□□□ -0.62
VPS53-202ENST00000389040 SUGCTQ9HAC7 445 aa11.21□□□□□ -0.62
VPS53-202ENST00000389040 BMP2KQ9NSY1 1161 aaPredicted RBP11.21□□□□□ -0.62
VPS53-202ENST00000389040 PHLPP2Q6ZVD8 1323 aa11.2□□□□□ -0.62
VPS53-202ENST00000389040 LRRC10BA6NIK2 292 aa11.2□□□□□ -0.62
VPS53-202ENST00000389040 KCNJ18B7U540 433 aa11.2□□□□□ -0.62
VPS53-202ENST00000389040 PSMA7O14818 248 aa11.2□□□□□ -0.62
VPS53-202ENST00000389040 PLA2G4BP0C869 781 aa11.2□□□□□ -0.62
VPS53-202ENST00000389040 ABCD1P33897 745 aa11.2□□□□□ -0.62
VPS53-202ENST00000389040 CRYBB1P53674 252 aaPredicted RBP11.2□□□□□ -0.62
VPS53-202ENST00000389040 SLC12A3P55017 1021 aa11.2□□□□□ -0.62
VPS53-202ENST00000389040 ASIC1P78348 528 aa11.2□□□□□ -0.62
VPS53-202ENST00000389040 MRPS6P82932 125 aaKnown RBP11.2□□□□□ -0.62
VPS53-202ENST00000389040 KCNJ12Q14500 433 aa11.2□□□□□ -0.62
VPS53-202ENST00000389040 EMC2Q15006 297 aa11.2□□□□□ -0.62
VPS53-202ENST00000389040 TCP11X2Q5H9J9 407 aa11.2□□□□□ -0.62
VPS53-202ENST00000389040 SV2BQ7L1I2 683 aa11.2□□□□□ -0.62
VPS53-202ENST00000389040 TRMT1LQ7Z2T5 733 aaKnown RBP11.2□□□□□ -0.62
VPS53-202ENST00000389040 TRAPPC12Q8WVT3 735 aa11.2□□□□□ -0.62
VPS53-202ENST00000389040 ZNF592Q92610 1267 aa11.2□□□□□ -0.62
VPS53-202ENST00000389040 LARP4BQ92615 738 aaKnown RBP11.2□□□□□ -0.62
VPS53-202ENST00000389040 APBB2Q92870 758 aa11.2□□□□□ -0.62
VPS53-202ENST00000389040 DRC1Q96MC2 740 aa11.2□□□□□ -0.62
VPS53-202ENST00000389040 CELF4Q9BZC1 486 aaKnown RBP11.2□□□□□ -0.62
VPS53-202ENST00000389040 EXOC1Q9NV70 894 aa11.2□□□□□ -0.62
VPS53-202ENST00000389040 TRIM49BA6NDI0 452 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 E9PMD0 336 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 ZBTB39O15060 712 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 STX10O60499 249 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 EFCAB14O75071 495 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 CXCL10P02778 98 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 BMP8BP34820 402 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 ARL2P36404 184 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 ADKP55263 362 aaKnown RBP11.19□□□□□ -0.62
VPS53-202ENST00000389040 TFDP1Q14186 410 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms