RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 SRRDQ9UH36 339 aa13.61□□□□□ -0.23
CIITA-202ENST00000381835 TSKSQ9UJT2 592 aa13.61□□□□□ -0.23
CIITA-202ENST00000381835 H3BRB1 525 aa13.61□□□□□ -0.23
CIITA-202ENST00000381835 EIF3DO15371 548 aaKnown RBP eCLIP13.61□□□□□ -0.23
CIITA-202ENST00000381835 SLC16A4O15374 487 aa13.61□□□□□ -0.23
CIITA-202ENST00000381835 HBP1O60381 514 aa13.61□□□□□ -0.23
CIITA-202ENST00000381835 AKR1A1P14550 325 aa13.61□□□□□ -0.23
CIITA-202ENST00000381835 CHMP4BP1P59074 171 aa13.61□□□□□ -0.23
CIITA-202ENST00000381835 GPS2Q13227 327 aa13.61□□□□□ -0.23
CIITA-202ENST00000381835 DMP1Q13316 513 aaPredicted RBP13.61□□□□□ -0.23
CIITA-202ENST00000381835 STXBP4Q6ZWJ1 553 aa13.61□□□□□ -0.23
CIITA-202ENST00000381835 NEK11Q8NG66 645 aa13.61□□□□□ -0.23
CIITA-202ENST00000381835 IRX2Q9BZI1 471 aaPredicted RBP13.61□□□□□ -0.23
CIITA-202ENST00000381835 IKZF4Q9H2S9 585 aa13.61□□□□□ -0.23
CIITA-202ENST00000381835 TUT1Q9H6E5 874 aaKnown RBP13.61□□□□□ -0.23
CIITA-202ENST00000381835 PCDHB13Q9Y5F0 798 aa13.61□□□□□ -0.23
CIITA-202ENST00000381835 THSD7BQ9C0I4 1608 aa13.6□□□□□ -0.23
CIITA-202ENST00000381835 ZBTB42B2RXF5 422 aa13.6□□□□□ -0.23
CIITA-202ENST00000381835 KCNJ18B7U540 433 aa13.6□□□□□ -0.23
CIITA-202ENST00000381835 CYBAP13498 195 aa13.6□□□□□ -0.23
CIITA-202ENST00000381835 RFC5P40937 340 aa13.6□□□□□ -0.23
CIITA-202ENST00000381835 NPTX2P47972 431 aa13.6□□□□□ -0.23
CIITA-202ENST00000381835 SMTNP53814 917 aa13.6□□□□□ -0.23
CIITA-202ENST00000381835 IGBP1P78318 339 aa13.6□□□□□ -0.23
CIITA-202ENST00000381835 KCNJ12Q14500 433 aa13.6□□□□□ -0.23
CIITA-202ENST00000381835 ZCWPW2Q504Y3 356 aa13.6□□□□□ -0.23
CIITA-202ENST00000381835 HAUS6Q7Z4H7 955 aa13.6□□□□□ -0.23
CIITA-202ENST00000381835 IRF2BP1Q8IU81 584 aa13.6□□□□□ -0.23
CIITA-202ENST00000381835 ZNF296Q8WUU4 475 aaPredicted RBP13.6□□□□□ -0.23
CIITA-202ENST00000381835 CPLX3Q8WVH0 158 aa13.6□□□□□ -0.23
CIITA-202ENST00000381835 KIFC3Q9BVG8 833 aa13.6□□□□□ -0.23
CIITA-202ENST00000381835 FUT8Q9BYC5 575 aa13.6□□□□□ -0.23
CIITA-202ENST00000381835 AP5M1Q9H0R1 490 aa13.6□□□□□ -0.23
CIITA-202ENST00000381835 THAP9Q9H5L6 903 aa13.6□□□□□ -0.23
CIITA-202ENST00000381835 SUGCTQ9HAC7 445 aa13.6□□□□□ -0.23
CIITA-202ENST00000381835 KMT5AQ9NQR1 393 aa13.6□□□□□ -0.23
CIITA-202ENST00000381835 A6NJR5 290 aa13.59□□□□□ -0.23
CIITA-202ENST00000381835 TEX33O43247 280 aa13.59□□□□□ -0.23
CIITA-202ENST00000381835 MAFO75444 373 aaPredicted RBP13.59□□□□□ -0.23
CIITA-202ENST00000381835 BEX3Q00994 111 aa13.59□□□□□ -0.23
CIITA-202ENST00000381835 CACNB2Q08289 660 aaPredicted RBP13.59□□□□□ -0.23
CIITA-202ENST00000381835 BMT2Q1RMZ1 405 aa13.59□□□□□ -0.23
CIITA-202ENST00000381835 TCP11X2Q5H9J9 407 aa13.59□□□□□ -0.23
CIITA-202ENST00000381835 IFT74Q96LB3 600 aa13.59□□□□□ -0.23
CIITA-202ENST00000381835 NAA15Q9BXJ9 866 aaKnown RBP13.59□□□□□ -0.23
CIITA-202ENST00000381835 MAGEC2Q9UBF1 373 aaPredicted RBP13.59□□□□□ -0.23
CIITA-202ENST00000381835 ADCY3O60266 1144 aa13.59□□□□□ -0.23
CIITA-202ENST00000381835 KIF5CO60282 957 aa13.59□□□□□ -0.23
CIITA-202ENST00000381835 FKTNO75072 461 aa13.59□□□□□ -0.23
CIITA-202ENST00000381835 MAPTP10636 758 aaKnown RBP13.59□□□□□ -0.23
CIITA-202ENST00000381835 INSRRP14616 1297 aa13.59□□□□□ -0.23
CIITA-202ENST00000381835 FKBP3Q00688 224 aaKnown RBP13.59□□□□□ -0.23
CIITA-202ENST00000381835 RBL2Q08999 1139 aa13.59□□□□□ -0.23
CIITA-202ENST00000381835 DRP2Q13474 957 aa13.59□□□□□ -0.23
CIITA-202ENST00000381835 KRT31Q15323 416 aa13.59□□□□□ -0.23
CIITA-202ENST00000381835 LONRF2Q1L5Z9 754 aa13.59□□□□□ -0.23
CIITA-202ENST00000381835 SRGAP1Q7Z6B7 1085 aa13.59□□□□□ -0.23
CIITA-202ENST00000381835 SYCP3Q8IZU3 236 aa13.59□□□□□ -0.23
CIITA-202ENST00000381835 LRRC71Q8N4P6 559 aa13.59□□□□□ -0.23
CIITA-202ENST00000381835 RAET1EQ8TD07 263 aa13.59□□□□□ -0.23
CIITA-202ENST00000381835 NOC3LQ8WTT2 800 aaKnown RBP13.59□□□□□ -0.23
CIITA-202ENST00000381835 ZBTB10Q96DT7 871 aa13.59□□□□□ -0.23
CIITA-202ENST00000381835 C17orf75Q9HAS0 396 aa13.59□□□□□ -0.23
CIITA-202ENST00000381835 ADGRG1Q9Y653 693 aa13.59□□□□□ -0.23
CIITA-202ENST00000381835 DNAH12Q6ZR08 3092 aa13.59□□□□□ -0.23
CIITA-202ENST00000381835 CCDC151A5D8V7 595 aa13.58□□□□□ -0.23
CIITA-202ENST00000381835 CLIC2O15247 247 aa13.58□□□□□ -0.23
CIITA-202ENST00000381835 PPP1R37O75864 691 aa13.58□□□□□ -0.23
CIITA-202ENST00000381835 HOXD8P13378 290 aaPredicted RBP13.58□□□□□ -0.23
CIITA-202ENST00000381835 NCKAP1LP55160 1127 aa13.58□□□□□ -0.23
CIITA-202ENST00000381835 SPAG1Q07617 926 aa13.58□□□□□ -0.23
CIITA-202ENST00000381835 BRD3Q15059 726 aa13.58□□□□□ -0.23
CIITA-202ENST00000381835 RAD9BQ6WBX8 426 aa13.58□□□□□ -0.23
CIITA-202ENST00000381835 LRRC55Q6ZSA7 311 aa13.58□□□□□ -0.23
CIITA-202ENST00000381835 ANKRD20A12PQ8NF67 263 aa13.58□□□□□ -0.23
CIITA-202ENST00000381835 CNOT6LQ96LI5 555 aaKnown RBP13.58□□□□□ -0.23
CIITA-202ENST00000381835 STRA6Q9BX79 667 aa13.58□□□□□ -0.23
CIITA-202ENST00000381835 TYW1Q9NV66 732 aaKnown RBP13.58□□□□□ -0.23
CIITA-202ENST00000381835 SAGE1Q9NXZ1 904 aa13.58□□□□□ -0.23
CIITA-202ENST00000381835 TAB2Q9NYJ8 693 aa13.58□□□□□ -0.23
CIITA-202ENST00000381835 PUF60Q9UHX1 559 aaKnown RBP13.58□□□□□ -0.23
CIITA-202ENST00000381835 ZMYM2Q9UBW7 1377 aa13.58□□□□□ -0.24
CIITA-202ENST00000381835 PDXKO00764 312 aa13.58□□□□□ -0.24
CIITA-202ENST00000381835 FGFR1OPO95684 399 aaKnown RBP13.58□□□□□ -0.24
CIITA-202ENST00000381835 C6orf222P0C671 652 aaPredicted RBP13.58□□□□□ -0.24
CIITA-202ENST00000381835 PRKAR2AP13861 404 aaKnown RBP13.58□□□□□ -0.24
CIITA-202ENST00000381835 BRD2P25440 801 aaKnown RBP13.58□□□□□ -0.24
CIITA-202ENST00000381835 CPT1AP50416 773 aa13.58□□□□□ -0.24
CIITA-202ENST00000381835 RTP1P59025 263 aa13.58□□□□□ -0.24
CIITA-202ENST00000381835 ADAM9Q13443 819 aa13.58□□□□□ -0.24
CIITA-202ENST00000381835 BRDTQ58F21 947 aaPredicted RBP13.58□□□□□ -0.24
CIITA-202ENST00000381835 PPP4R3CPQ6ZMV5 832 aa13.58□□□□□ -0.24
CIITA-202ENST00000381835 APTXQ7Z2E3 356 aaKnown RBP13.58□□□□□ -0.24
CIITA-202ENST00000381835 FAM114A1Q8IWE2 563 aa13.58□□□□□ -0.24
CIITA-202ENST00000381835 METTL13Q8N6R0 699 aa13.58□□□□□ -0.24
CIITA-202ENST00000381835 CEP112Q8N8E3 955 aa13.58□□□□□ -0.24
CIITA-202ENST00000381835 TMEM161BQ8NDZ6 487 aa13.58□□□□□ -0.24
CIITA-202ENST00000381835 ASAP3Q8TDY4 903 aa13.58□□□□□ -0.24
CIITA-202ENST00000381835 PPP1R13LQ8WUF5 828 aa13.58□□□□□ -0.24
CIITA-202ENST00000381835 CTAGE1Q96RT6 745 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms