RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 GDPD2Q9HCC8 539 aa16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 MSRAQ9UJ68 235 aa16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 CIZ1Q9ULV3 898 aaPredicted RBP16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 PIN4Q9Y237 131 aaKnown RBP16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 ATP6V1DQ9Y5K8 247 aa16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 SFI1A8K8P3 1242 aa16.68■□□□□ 0.26
SMPDL3A-201ENST00000368440 INO80B-WBP1J3KQ70 363 aa16.68■□□□□ 0.26
SMPDL3A-201ENST00000368440 AMHR2Q16671 573 aa16.68■□□□□ 0.26
SMPDL3A-201ENST00000368440 CDCA2Q69YH5 1023 aaPredicted RBP16.68■□□□□ 0.26
SMPDL3A-201ENST00000368440 NFKBIZQ9BYH8 718 aa16.68■□□□□ 0.26
SMPDL3A-201ENST00000368440 AGPAT5Q9NUQ2 364 aa16.68■□□□□ 0.26
SMPDL3A-201ENST00000368440 FNDC1Q4ZHG4 1894 aaPredicted RBP16.68■□□□□ 0.26
SMPDL3A-201ENST00000368440 CHD7Q9P2D1 2997 aa16.68■□□□□ 0.26
SMPDL3A-201ENST00000368440 KIAA1671Q9BY89 1806 aa16.67■□□□□ 0.26
SMPDL3A-201ENST00000368440 TSPAN1O60635 241 aa16.67■□□□□ 0.26
SMPDL3A-201ENST00000368440 EDN1P05305 212 aa16.67■□□□□ 0.26
SMPDL3A-201ENST00000368440 NAMPTP43490 491 aa16.67■□□□□ 0.26
SMPDL3A-201ENST00000368440 SARSP49591 514 aaKnown RBP16.67■□□□□ 0.26
SMPDL3A-201ENST00000368440 HTRA4P83105 476 aaPredicted RBP16.67■□□□□ 0.26
SMPDL3A-201ENST00000368440 NFKBIBQ15653 356 aa16.67■□□□□ 0.26
SMPDL3A-201ENST00000368440 SLC24A5Q71RS6 500 aa16.67■□□□□ 0.26
SMPDL3A-201ENST00000368440 FAM161BQ96MY7 647 aa16.67■□□□□ 0.26
SMPDL3A-201ENST00000368440 REEP2Q9BRK0 252 aa16.67■□□□□ 0.26
SMPDL3A-201ENST00000368440 STK17AQ9UEE5 414 aa16.67■□□□□ 0.26
SMPDL3A-201ENST00000368440 NLRC5Q86WI3 1866 aa16.67■□□□□ 0.26
SMPDL3A-201ENST00000368440 B4GALT5O43286 388 aa16.67■□□□□ 0.26
SMPDL3A-201ENST00000368440 ZSCAN20P17040 1043 aaPredicted RBP16.67■□□□□ 0.26
SMPDL3A-201ENST00000368440 HOXA11P31270 313 aaPredicted RBP16.67■□□□□ 0.26
SMPDL3A-201ENST00000368440 GATMP50440 423 aa16.67■□□□□ 0.26
SMPDL3A-201ENST00000368440 PEX3P56589 373 aa16.67■□□□□ 0.26
SMPDL3A-201ENST00000368440 RESP18Q5W5W9 173 aa16.67■□□□□ 0.26
SMPDL3A-201ENST00000368440 CPB2Q96IY4 423 aa16.67■□□□□ 0.26
SMPDL3A-201ENST00000368440 IFT74Q96LB3 600 aa16.67■□□□□ 0.26
SMPDL3A-201ENST00000368440 DRC1Q96MC2 740 aa16.67■□□□□ 0.26
SMPDL3A-201ENST00000368440 RAD9AQ99638 391 aa16.67■□□□□ 0.26
SMPDL3A-201ENST00000368440 RC3H2Q9HBD1 1191 aaKnown RBP16.67■□□□□ 0.26
SMPDL3A-201ENST00000368440 C1orf112Q9NSG2 853 aa16.67■□□□□ 0.26
SMPDL3A-201ENST00000368440 KCND2Q9NZV8 630 aa16.67■□□□□ 0.26
SMPDL3A-201ENST00000368440 CDH23Q9H251 3354 aa16.66■□□□□ 0.26
SMPDL3A-201ENST00000368440 TTLL13PA6NNM8 815 aa16.66■□□□□ 0.26
SMPDL3A-201ENST00000368440 STAT6P42226 847 aa16.66■□□□□ 0.26
SMPDL3A-201ENST00000368440 NPTX2P47972 431 aa16.66■□□□□ 0.26
SMPDL3A-201ENST00000368440 FAM189BP81408 668 aa16.66■□□□□ 0.26
SMPDL3A-201ENST00000368440 PPP2R5AQ15172 486 aa16.66■□□□□ 0.26
SMPDL3A-201ENST00000368440 E2F4Q16254 413 aa16.66■□□□□ 0.26
SMPDL3A-201ENST00000368440 GPR153Q6NV75 609 aa16.66■□□□□ 0.26
SMPDL3A-201ENST00000368440 CCDC73Q6ZRK6 1079 aa16.66■□□□□ 0.26
SMPDL3A-201ENST00000368440 NPAS4Q8IUM7 802 aa16.66■□□□□ 0.26
SMPDL3A-201ENST00000368440 DEPTORQ8TB45 409 aa16.66■□□□□ 0.26
SMPDL3A-201ENST00000368440 TIPINQ9BVW5 301 aa16.66■□□□□ 0.26
SMPDL3A-201ENST00000368440 CCDC113Q9H0I3 377 aa16.66■□□□□ 0.26
SMPDL3A-201ENST00000368440 USP20Q9Y2K6 914 aa16.66■□□□□ 0.26
SMPDL3A-201ENST00000368440 ERLIN2O94905 339 aa16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 GIT2Q14161 759 aa16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 ZNF697Q5TEC3 545 aa16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 TWF2Q6IBS0 349 aaKnown RBP16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 CDR2LQ86X02 465 aaPredicted RBP16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 ZBTB8OSQ8IWT0 167 aa16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 YME1L1Q96TA2 773 aa16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 CHST12Q9NRB3 414 aa16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 INSL6Q9Y581 213 aa16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 COL4A4P53420 1690 aaPredicted RBP16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 CCDC169A6NNP5 214 aa16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 DGKIO75912 1065 aa16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 ATF7P17544 494 aaPredicted RBP16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 ARF4P18085 180 aaPredicted RBP16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 LIG1P18858 919 aa16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 TAP1Q03518 808 aa16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 TPRNQ4KMQ1 711 aa16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 UBXN11Q5T124 520 aa16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 PPP2R2DQ66LE6 453 aa16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 ECHDC2Q86YB7 292 aa16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 SP7Q8TDD2 431 aaPredicted RBP16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 STAMQ92783 540 aa16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 DHX58Q96C10 678 aa16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 ZNF689Q96CS4 500 aaPredicted RBP16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 SCAND2PQ9GZW5 306 aaPredicted RBP16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 C2orf40Q9H1Z8 148 aa16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 FZD8Q9H461 694 aa16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 ZNF576Q9H609 170 aa16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 SLC28A3Q9HAS3 691 aa16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 LRFN2Q9ULH4 789 aa16.65■□□□□ 0.26
SMPDL3A-201ENST00000368440 MYMKA6NI61 221 aa16.64■□□□□ 0.25
SMPDL3A-201ENST00000368440 FGFR1P11362 822 aa16.64■□□□□ 0.25
SMPDL3A-201ENST00000368440 PLS3P13797 630 aa16.64■□□□□ 0.25
SMPDL3A-201ENST00000368440 DMP1Q13316 513 aaPredicted RBP16.64■□□□□ 0.25
SMPDL3A-201ENST00000368440 FAM43BQ6ZT52 329 aaPredicted RBP16.64■□□□□ 0.25
SMPDL3A-201ENST00000368440 DYMQ7RTS9 669 aa16.64■□□□□ 0.25
SMPDL3A-201ENST00000368440 TAS1R3Q7RTX0 852 aa16.64■□□□□ 0.25
SMPDL3A-201ENST00000368440 DEFB123Q8N688 67 aa16.64■□□□□ 0.25
SMPDL3A-201ENST00000368440 SEMA6BQ9H3T3 888 aa16.64■□□□□ 0.25
SMPDL3A-201ENST00000368440 KMT5AQ9NQR1 393 aa16.64■□□□□ 0.25
SMPDL3A-201ENST00000368440 RNF19AQ9NV58 838 aa16.64■□□□□ 0.25
SMPDL3A-201ENST00000368440 TMEM161AQ9NX61 479 aa16.64■□□□□ 0.25
SMPDL3A-201ENST00000368440 DACT1Q9NYF0 836 aa16.64■□□□□ 0.25
SMPDL3A-201ENST00000368440 ODF2LQ9ULJ1 636 aa16.64■□□□□ 0.25
SMPDL3A-201ENST00000368440 PCDHB7Q9Y5E2 793 aa16.64■□□□□ 0.25
SMPDL3A-201ENST00000368440 TMEM265A0A087WTH1 108 aa16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 A0A0U1RQF3 1178 aa16.63■□□□□ 0.25
SMPDL3A-201ENST00000368440 LINC01553A4QN01 128 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms