RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 APEX2Q9UBZ4 518 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 CD2APQ9Y5K6 639 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 BTNL10A8MVZ5 291 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 RGS16O15492 202 aaPredicted RBP13.11□□□□□ -0.31
CLIP3-201ENST00000360535 DDX3YO15523 660 aaKnown RBP13.11□□□□□ -0.31
CLIP3-201ENST00000360535 FOSP01100 380 aaPredicted RBP13.11□□□□□ -0.31
CLIP3-201ENST00000360535 OTOP1Q7RTM1 612 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 SLFN11Q7Z7L1 901 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 ARHGEF19Q8IW93 802 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 CNPY4Q8N129 248 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 PRPF38AQ8NAV1 312 aaKnown RBP13.11□□□□□ -0.31
CLIP3-201ENST00000360535 EPS8L3Q8TE67 593 aaKnown RBP13.11□□□□□ -0.31
CLIP3-201ENST00000360535 CSRNP1Q96S65 589 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 ERP44Q9BS26 406 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 SLC40A1Q9NP59 571 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 KLC4Q9NSK0 619 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 NYAP2Q9P242 653 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 ZMYM2Q9UBW7 1377 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 BTAF1O14981 1849 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 SLC16A3O15427 465 aaKnown RBP13.11□□□□□ -0.31
CLIP3-201ENST00000360535 HIP1RO75146 1068 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 MMEP08473 750 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 RRP1BQ14684 758 aaKnown RBP13.11□□□□□ -0.31
CLIP3-201ENST00000360535 C1orf186Q6ZWK4 172 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 ZNF720Q7Z2F6 126 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 ADAMTSL1Q8N6G6 1762 aa13.1□□□□□ -0.31
CLIP3-201ENST00000360535 POLRMTO00411 1230 aaKnown RBP13.1□□□□□ -0.31
CLIP3-201ENST00000360535 RGL2O15211 777 aa13.1□□□□□ -0.31
CLIP3-201ENST00000360535 TRIM37O94972 964 aa13.1□□□□□ -0.31
CLIP3-201ENST00000360535 TMEM253P0C7T8 217 aa13.1□□□□□ -0.31
CLIP3-201ENST00000360535 KIAA1755Q5JYT7 1200 aa13.1□□□□□ -0.31
CLIP3-201ENST00000360535 RASGEF1CQ8N431 466 aa13.1□□□□□ -0.31
CLIP3-201ENST00000360535 ATP8B4Q8TF62 1192 aa13.1□□□□□ -0.31
CLIP3-201ENST00000360535 DYDC1Q8WWB3 177 aa13.1□□□□□ -0.31
CLIP3-201ENST00000360535 CRAMP1Q96RY5 1269 aa13.1□□□□□ -0.31
CLIP3-201ENST00000360535 AGPAT1Q99943 283 aa13.1□□□□□ -0.31
CLIP3-201ENST00000360535 ELAC2Q9BQ52 826 aaKnown RBP13.1□□□□□ -0.31
CLIP3-201ENST00000360535 CBWD1Q9BRT8 395 aa13.1□□□□□ -0.31
CLIP3-201ENST00000360535 LXNQ9BS40 222 aa13.1□□□□□ -0.31
CLIP3-201ENST00000360535 HOMER2Q9NSB8 354 aa13.1□□□□□ -0.31
CLIP3-201ENST00000360535 GAP43P17677 238 aa13.1□□□□□ -0.31
CLIP3-201ENST00000360535 COMTP21964 271 aa13.1□□□□□ -0.31
CLIP3-201ENST00000360535 HOXA7P31268 230 aaPredicted RBP13.1□□□□□ -0.31
CLIP3-201ENST00000360535 EPC2Q52LR7 807 aa13.1□□□□□ -0.31
CLIP3-201ENST00000360535 C2CD6Q53TS8 623 aa13.1□□□□□ -0.31
CLIP3-201ENST00000360535 FAM133BQ5BKY9 247 aaKnown RBP13.1□□□□□ -0.31
CLIP3-201ENST00000360535 TMEM179Q6ZVK1 233 aa13.1□□□□□ -0.31
CLIP3-201ENST00000360535 SLC30A5Q8TAD4 765 aa13.1□□□□□ -0.31
CLIP3-201ENST00000360535 NEK9Q8TD19 979 aa13.1□□□□□ -0.31
CLIP3-201ENST00000360535 FBXO28Q9NVF7 368 aa13.1□□□□□ -0.31
CLIP3-201ENST00000360535 CES2O00748 559 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 TBX3O15119 743 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 FSBPO95073 299 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 SGPL1O95470 568 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 ACSL3O95573 720 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 BFSP1Q12934 665 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 SPATS2Q86XZ4 545 aaKnown RBP13.09□□□□□ -0.31
CLIP3-201ENST00000360535 RNF25Q96BH1 459 aaPredicted RBP13.09□□□□□ -0.31
CLIP3-201ENST00000360535 PRMT1Q99873 361 aaKnown RBP13.09□□□□□ -0.31
CLIP3-201ENST00000360535 HSD17B14Q9BPX1 270 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 FAM118BQ9BPY3 351 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 UNC45AQ9H3U1 944 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 VCPKMTQ9H867 229 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.09□□□□□ -0.31
CLIP3-201ENST00000360535 UTRNP46939 3433 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 CYP26A1O43174 497 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 TOM1O60784 492 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 ZBTB48P10074 688 aaPredicted RBP13.09□□□□□ -0.31
CLIP3-201ENST00000360535 RPL21P46778 160 aaKnown RBP13.09□□□□□ -0.31
CLIP3-201ENST00000360535 PTENP60484 403 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 MAP2K1Q02750 393 aaPredicted RBP13.09□□□□□ -0.31
CLIP3-201ENST00000360535 CCDC137Q6PK04 289 aaKnown RBP13.09□□□□□ -0.31
CLIP3-201ENST00000360535 HHIPL2Q6UWX4 724 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 MIGA2Q7L4E1 593 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 SUGP1Q8IWZ8 645 aaKnown RBP13.09□□□□□ -0.31
CLIP3-201ENST00000360535 C1orf54Q8WWF1 131 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 MBOAT7Q96N66 472 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 POLR3CQ9BUI4 534 aaPredicted RBP13.09□□□□□ -0.31
CLIP3-201ENST00000360535 GPR88Q9GZN0 384 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 ANKRD62A6NC57 917 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 SSTR3P32745 418 aaPredicted RBP13.09□□□□□ -0.31
CLIP3-201ENST00000360535 GJC1P36383 396 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 STAT2P52630 851 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 PPP3CAQ08209 521 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 PPP1R7Q15435 360 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 CPXCR1Q8N123 301 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 ANKRD42Q8N9B4 389 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 CRYGNQ8WXF5 182 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 TBC1D31Q96DN5 1066 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 BORCS6Q96GS4 357 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 XPO6Q96QU8 1125 aaKnown RBP13.09□□□□□ -0.31
CLIP3-201ENST00000360535 MTFR1LQ9H019 292 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 OLFML3Q9NRN5 406 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 RASAL2Q9UJF2 1139 aa13.09□□□□□ -0.31
CLIP3-201ENST00000360535 NRAPQ86VF7 1730 aa13.08□□□□□ -0.31
CLIP3-201ENST00000360535 A0A0A6YYK5 440 aaPredicted RBP13.08□□□□□ -0.32
CLIP3-201ENST00000360535 ANKRD63C9JTQ0 380 aa13.08□□□□□ -0.32
CLIP3-201ENST00000360535 CCDC172P0C7W6 258 aa13.08□□□□□ -0.32
CLIP3-201ENST00000360535 POLR2MP0CAP2 368 aa13.08□□□□□ -0.32
CLIP3-201ENST00000360535 BCRP11274 1271 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms