RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 IFT74Q96LB3 600 aa17.16■□□□□ 0.34
HMGA1-202ENST00000347617 DDX47Q9H0S4 455 aaKnown RBP17.16■□□□□ 0.34
HMGA1-202ENST00000347617 PABPC3Q9H361 631 aaKnown RBP17.16■□□□□ 0.34
HMGA1-202ENST00000347617 NAGPAQ9UK23 515 aa17.16■□□□□ 0.34
HMGA1-202ENST00000347617 LUC7L3O95232 432 aaKnown RBP17.15■□□□□ 0.34
HMGA1-202ENST00000347617 RNASE9P60153 205 aaKnown RBP17.15■□□□□ 0.34
HMGA1-202ENST00000347617 PTENP60484 403 aa17.15■□□□□ 0.34
HMGA1-202ENST00000347617 POU5F1Q01860 360 aaKnown RBP17.15■□□□□ 0.34
HMGA1-202ENST00000347617 GRIK3Q13003 919 aa17.15■□□□□ 0.34
HMGA1-202ENST00000347617 C11orf91Q3C1V1 193 aa17.15■□□□□ 0.34
HMGA1-202ENST00000347617 DENND2CQ68D51 928 aa17.15■□□□□ 0.34
HMGA1-202ENST00000347617 DYMQ7RTS9 669 aa17.15■□□□□ 0.34
HMGA1-202ENST00000347617 IRF2BP2Q7Z5L9 587 aa17.15■□□□□ 0.34
HMGA1-202ENST00000347617 DDX42Q86XP3 938 aaKnown RBP eCLIP17.15■□□□□ 0.34
HMGA1-202ENST00000347617 GPC2Q8N158 579 aa17.15■□□□□ 0.34
HMGA1-202ENST00000347617 ARMC2Q8NEN0 867 aa17.15■□□□□ 0.34
HMGA1-202ENST00000347617 HES6Q96HZ4 224 aa17.15■□□□□ 0.34
HMGA1-202ENST00000347617 PACSIN1Q9BY11 444 aa17.15■□□□□ 0.34
HMGA1-202ENST00000347617 NT5C3AQ9H0P0 336 aa17.15■□□□□ 0.34
HMGA1-202ENST00000347617 BIN2Q9UBW5 565 aaPredicted RBP17.15■□□□□ 0.34
HMGA1-202ENST00000347617 AMFRQ9UKV5 643 aa17.15■□□□□ 0.34
HMGA1-202ENST00000347617 PCDHA1Q9Y5I3 950 aa17.15■□□□□ 0.34
HMGA1-202ENST00000347617 DICER1Q9UPY3 1922 aaKnown RBP17.15■□□□□ 0.34
HMGA1-202ENST00000347617 CETN3O15182 167 aa17.15■□□□□ 0.34
HMGA1-202ENST00000347617 CHN1P15882 459 aa17.15■□□□□ 0.34
HMGA1-202ENST00000347617 TXKP42681 527 aa17.15■□□□□ 0.34
HMGA1-202ENST00000347617 AP3B2Q13367 1082 aa17.15■□□□□ 0.34
HMGA1-202ENST00000347617 PPP2R5AQ15172 486 aa17.15■□□□□ 0.34
HMGA1-202ENST00000347617 HYIQ5T013 277 aa17.15■□□□□ 0.34
HMGA1-202ENST00000347617 ALKBH5Q6P6C2 394 aaKnown RBP17.15■□□□□ 0.34
HMGA1-202ENST00000347617 TAOK1Q7L7X3 1001 aa17.15■□□□□ 0.34
HMGA1-202ENST00000347617 FRMD5Q7Z6J6 570 aa17.15■□□□□ 0.34
HMGA1-202ENST00000347617 FAM160B2Q86V87 743 aa17.15■□□□□ 0.34
HMGA1-202ENST00000347617 APLFQ8IW19 511 aaPredicted RBP17.15■□□□□ 0.34
HMGA1-202ENST00000347617 SNX29Q8TEQ0 813 aa17.15■□□□□ 0.34
HMGA1-202ENST00000347617 SPAG5Q96R06 1193 aa17.15■□□□□ 0.34
HMGA1-202ENST00000347617 DAAM1Q9Y4D1 1078 aa17.15■□□□□ 0.34
HMGA1-202ENST00000347617 FOSP01100 380 aaPredicted RBP17.14■□□□□ 0.33
HMGA1-202ENST00000347617 MYCNP04198 464 aaPredicted RBP17.14■□□□□ 0.33
HMGA1-202ENST00000347617 NQO1P15559 274 aaKnown RBP17.14■□□□□ 0.33
HMGA1-202ENST00000347617 PAX7P23759 505 aa17.14■□□□□ 0.33
HMGA1-202ENST00000347617 PDE6CP51160 858 aa17.14■□□□□ 0.33
HMGA1-202ENST00000347617 STAT2P52630 851 aa17.14■□□□□ 0.33
HMGA1-202ENST00000347617 PMS2P54278 862 aa17.14■□□□□ 0.33
HMGA1-202ENST00000347617 MOXD1Q6UVY6 613 aa17.14■□□□□ 0.33
HMGA1-202ENST00000347617 FBXO11Q86XK2 927 aa17.14■□□□□ 0.33
HMGA1-202ENST00000347617 APOBEC3FQ8IUX4 373 aaKnown RBP17.14■□□□□ 0.33
HMGA1-202ENST00000347617 DNAJC19Q96DA6 116 aa17.14■□□□□ 0.33
HMGA1-202ENST00000347617 L3MBTL3Q96JM7 780 aaPredicted RBP17.14■□□□□ 0.33
HMGA1-202ENST00000347617 ERP44Q9BS26 406 aa17.14■□□□□ 0.33
HMGA1-202ENST00000347617 AP1M1Q9BXS5 423 aa17.14■□□□□ 0.33
HMGA1-202ENST00000347617 INTS9Q9NV88 658 aaKnown RBP17.14■□□□□ 0.33
HMGA1-202ENST00000347617 PANK4Q9NVE7 773 aa17.14■□□□□ 0.33
HMGA1-202ENST00000347617 AMACRQ9UHK6 382 aa17.14■□□□□ 0.33
HMGA1-202ENST00000347617 PPP2R3BQ9Y5P8 575 aa17.14■□□□□ 0.33
HMGA1-202ENST00000347617 GJA3Q9Y6H8 435 aa17.14■□□□□ 0.33
HMGA1-202ENST00000347617 NCANO14594 1321 aa17.13■□□□□ 0.33
HMGA1-202ENST00000347617 O00370 1275 aa17.13■□□□□ 0.33
HMGA1-202ENST00000347617 OPLAHO14841 1288 aa17.13■□□□□ 0.33
HMGA1-202ENST00000347617 RGS16O15492 202 aaPredicted RBP17.13■□□□□ 0.33
HMGA1-202ENST00000347617 TTI1O43156 1089 aa17.13■□□□□ 0.33
HMGA1-202ENST00000347617 WFS1O76024 890 aa17.13■□□□□ 0.33
HMGA1-202ENST00000347617 PTK2Q05397 1052 aa17.13■□□□□ 0.33
HMGA1-202ENST00000347617 DCAF15Q66K64 600 aa17.13■□□□□ 0.33
HMGA1-202ENST00000347617 DUPD1Q68J44 220 aa17.13■□□□□ 0.33
HMGA1-202ENST00000347617 MIGA2Q7L4E1 593 aa17.13■□□□□ 0.33
HMGA1-202ENST00000347617 NT5DC3Q86UY8 548 aa17.13■□□□□ 0.33
HMGA1-202ENST00000347617 ACER1Q8TDN7 264 aa17.13■□□□□ 0.33
HMGA1-202ENST00000347617 NSMCE1Q8WV22 266 aa17.13■□□□□ 0.33
HMGA1-202ENST00000347617 DEFB129Q9H1M3 183 aa17.13■□□□□ 0.33
HMGA1-202ENST00000347617 CARD9Q9H257 536 aa17.13■□□□□ 0.33
HMGA1-202ENST00000347617 HACL1Q9UJ83 578 aa17.13■□□□□ 0.33
HMGA1-202ENST00000347617 FEM1BQ9UK73 627 aa17.13■□□□□ 0.33
HMGA1-202ENST00000347617 TRPC6Q9Y210 931 aa17.13■□□□□ 0.33
HMGA1-202ENST00000347617 RAD21O60216 631 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 CAND2O75155 1236 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 ATP2C2O75185 946 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 ANP32DO95626 131 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 FERP16591 822 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 FLT3P36888 993 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 ECE1P42892 770 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 SAMD7Q7Z3H4 446 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 ZNF571Q7Z3V5 609 aaPredicted RBP17.12■□□□□ 0.33
HMGA1-202ENST00000347617 RUNDC3BQ96NL0 473 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 ROPN1BQ9BZX4 212 aaPredicted RBP17.12■□□□□ 0.33
HMGA1-202ENST00000347617 ROPN1Q9HAT0 212 aaPredicted RBP17.12■□□□□ 0.33
HMGA1-202ENST00000347617 KCNMB3Q9NPA1 279 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 GPRC5DQ9NZD1 345 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 ZNF112Q9UJU3 913 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 PNMA2Q9UL42 364 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 PRR12Q9ULL5 1215 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 CYP3A7-CYP3A51PA0A087WV96 503 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 EGFRP00533 1210 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 AFPP02771 609 aaKnown RBP17.12■□□□□ 0.33
HMGA1-202ENST00000347617 CYP3A7P24462 503 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 CCNG1P51959 295 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 KCNH2Q12809 1159 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 MYO1EQ12965 1108 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 CDAN1Q8IWY9 1227 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 LRRC34Q8IZ02 419 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms