RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 PPATQ06203 517 aa24.18■■□□□ 1.46
TRIM28-202ENST00000341753 LLGL1Q15334 1064 aa24.18■■□□□ 1.46
TRIM28-202ENST00000341753 SLC30A10Q6XR72 485 aa24.18■■□□□ 1.46
TRIM28-202ENST00000341753 EPM2AIP1Q7L775 607 aaPredicted RBP24.18■■□□□ 1.46
TRIM28-202ENST00000341753 OTUD6AQ7L8S5 288 aa24.18■■□□□ 1.46
TRIM28-202ENST00000341753 ATP6V0A4Q9HBG4 840 aa24.18■■□□□ 1.46
TRIM28-202ENST00000341753 KCNMB3Q9NPA1 279 aa24.18■■□□□ 1.46
TRIM28-202ENST00000341753 DNAJC12Q9UKB3 198 aa24.18■■□□□ 1.46
TRIM28-202ENST00000341753 CCDC169A6NNP5 214 aa24.18■■□□□ 1.46
TRIM28-202ENST00000341753 PDXKO00764 312 aa24.18■■□□□ 1.46
TRIM28-202ENST00000341753 SNHG28P0DPA3 235 aa24.18■■□□□ 1.46
TRIM28-202ENST00000341753 SOX5P35711 763 aa24.18■■□□□ 1.46
TRIM28-202ENST00000341753 RPL21P46778 160 aaKnown RBP24.18■■□□□ 1.46
TRIM28-202ENST00000341753 NPEPPSP55786 919 aa24.18■■□□□ 1.46
TRIM28-202ENST00000341753 KCNJ2P63252 427 aa24.18■■□□□ 1.46
TRIM28-202ENST00000341753 TRPM8Q7Z2W7 1104 aa24.18■■□□□ 1.46
TRIM28-202ENST00000341753 KRT35Q92764 455 aa24.18■■□□□ 1.46
TRIM28-202ENST00000341753 RUSC1Q9BVN2 902 aa24.18■■□□□ 1.46
TRIM28-202ENST00000341753 MLXIPLQ9NP71 852 aa24.18■■□□□ 1.46
TRIM28-202ENST00000341753 PITPNM2Q9BZ72 1349 aa24.17■■□□□ 1.46
TRIM28-202ENST00000341753 ATAD5Q96QE3 1844 aa24.17■■□□□ 1.46
TRIM28-202ENST00000341753 HGSO14964 777 aaPredicted RBP24.17■■□□□ 1.46
TRIM28-202ENST00000341753 LRRN2O75325 713 aa24.17■■□□□ 1.46
TRIM28-202ENST00000341753 COG2Q14746 738 aa24.17■■□□□ 1.46
TRIM28-202ENST00000341753 CCDC25Q86WR0 208 aa24.17■■□□□ 1.46
TRIM28-202ENST00000341753 PGM2Q96G03 612 aa24.17■■□□□ 1.46
TRIM28-202ENST00000341753 BHMT2Q9H2M3 363 aa24.17■■□□□ 1.46
TRIM28-202ENST00000341753 DNAJC18Q9H819 358 aa24.17■■□□□ 1.46
TRIM28-202ENST00000341753 GRHL1Q9NZI5 618 aa24.17■■□□□ 1.46
TRIM28-202ENST00000341753 DNM3Q9UQ16 869 aa24.17■■□□□ 1.46
TRIM28-202ENST00000341753 FOXO6A8MYZ6 492 aa24.17■■□□□ 1.46
TRIM28-202ENST00000341753 ZBTB5O15062 677 aa24.17■■□□□ 1.46
TRIM28-202ENST00000341753 MAPK7Q13164 816 aa24.17■■□□□ 1.46
TRIM28-202ENST00000341753 ANO3Q9BYT9 981 aa24.17■■□□□ 1.46
TRIM28-202ENST00000341753 TYW1Q9NV66 732 aaKnown RBP24.17■■□□□ 1.46
TRIM28-202ENST00000341753 INTUQ9ULD6 942 aa24.17■■□□□ 1.46
TRIM28-202ENST00000341753 TTC7AQ9ULT0 858 aaPredicted RBP24.17■■□□□ 1.46
TRIM28-202ENST00000341753 TRPC6Q9Y210 931 aa24.17■■□□□ 1.46
TRIM28-202ENST00000341753 ATF5Q9Y2D1 282 aaPredicted RBP24.17■■□□□ 1.46
TRIM28-202ENST00000341753 PTPN22Q9Y2R2 807 aa24.17■■□□□ 1.46
TRIM28-202ENST00000341753 ASAP2O43150 1006 aa24.16■■□□□ 1.46
TRIM28-202ENST00000341753 SKAP2O75563 359 aaPredicted RBP24.16■■□□□ 1.46
TRIM28-202ENST00000341753 MMP10P09238 476 aa24.16■■□□□ 1.46
TRIM28-202ENST00000341753 TRIM49P0CI25 452 aa24.16■■□□□ 1.46
TRIM28-202ENST00000341753 TRIM49CP0CI26 452 aa24.16■■□□□ 1.46
TRIM28-202ENST00000341753 SPATA31C1P0DKV0 1188 aa24.16■■□□□ 1.46
TRIM28-202ENST00000341753 CHRM1P11229 460 aaPredicted RBP24.16■■□□□ 1.46
TRIM28-202ENST00000341753 RBM5P52756 815 aaKnown RBP eCLIP24.16■■□□□ 1.462e-6■■■■□ 22.7
TRIM28-202ENST00000341753 ZC2HC1CQ53FD0 456 aaPredicted RBP24.16■■□□□ 1.46
TRIM28-202ENST00000341753 TAX1BP1Q86VP1 789 aa24.16■■□□□ 1.46
TRIM28-202ENST00000341753 UBOX5O94941 541 aa24.16■■□□□ 1.46
TRIM28-202ENST00000341753 TMEM253P0C7T8 217 aa24.16■■□□□ 1.46
TRIM28-202ENST00000341753 TTC27Q6P3X3 843 aa24.16■■□□□ 1.46
TRIM28-202ENST00000341753 NSMCE1Q8WV22 266 aa24.16■■□□□ 1.46
TRIM28-202ENST00000341753 P2RX7Q99572 595 aaKnown RBP24.16■■□□□ 1.46
TRIM28-202ENST00000341753 ANKRD63C9JTQ0 380 aa24.15■■□□□ 1.46
TRIM28-202ENST00000341753 PPP1R18Q6NYC8 613 aa24.15■■□□□ 1.46
TRIM28-202ENST00000341753 ZDHHC14Q8IZN3 488 aa24.15■■□□□ 1.46
TRIM28-202ENST00000341753 CARD9Q9H257 536 aa24.15■■□□□ 1.46
TRIM28-202ENST00000341753 NCANO14594 1321 aa24.15■■□□□ 1.46
TRIM28-202ENST00000341753 TULP1O00294 542 aaPredicted RBP24.15■■□□□ 1.46
TRIM28-202ENST00000341753 LMNB1P20700 586 aa24.15■■□□□ 1.46
TRIM28-202ENST00000341753 CDC25CP30307 473 aa24.15■■□□□ 1.46
TRIM28-202ENST00000341753 NMT1P30419 496 aaKnown RBP24.15■■□□□ 1.46
TRIM28-202ENST00000341753 FAM186BQ8IYM0 893 aa24.15■■□□□ 1.46
TRIM28-202ENST00000341753 KIF2BQ8N4N8 673 aa24.15■■□□□ 1.46
TRIM28-202ENST00000341753 PRCCQ92733 491 aaPredicted RBP24.15■■□□□ 1.46
TRIM28-202ENST00000341753 METTL14Q9HCE5 456 aaKnown RBP24.15■■□□□ 1.46
TRIM28-202ENST00000341753 LTBP1Q14766 1721 aa24.15■■□□□ 1.46
TRIM28-202ENST00000341753 VCAM1P19320 739 aa24.14■■□□□ 1.46
TRIM28-202ENST00000341753 RPL13P26373 211 aaKnown RBP24.14■■□□□ 1.46
TRIM28-202ENST00000341753 CRKP46108 304 aa24.14■■□□□ 1.46
TRIM28-202ENST00000341753 SPIRE1Q08AE8 756 aa24.14■■□□□ 1.46
TRIM28-202ENST00000341753 ITIH4Q14624 930 aa24.14■■□□□ 1.46
TRIM28-202ENST00000341753 CBWD6Q4V339 395 aa24.14■■□□□ 1.46
TRIM28-202ENST00000341753 CBWD3Q5JTY5 395 aa24.14■■□□□ 1.46
TRIM28-202ENST00000341753 CBWD5Q5RIA9 395 aa24.14■■□□□ 1.46
TRIM28-202ENST00000341753 SYT2Q8N9I0 419 aaPredicted RBP24.14■■□□□ 1.46
TRIM28-202ENST00000341753 TEKT1Q969V4 418 aa24.14■■□□□ 1.46
TRIM28-202ENST00000341753 PCDHA1Q9Y5I3 950 aa24.14■■□□□ 1.46
TRIM28-202ENST00000341753 ANKRD31Q8N7Z5 1873 aa24.14■■□□□ 1.46
TRIM28-202ENST00000341753 DDTLA6NHG4 134 aaPredicted RBP24.14■■□□□ 1.45
TRIM28-202ENST00000341753 TGFB1I1O43294 461 aa24.14■■□□□ 1.45
TRIM28-202ENST00000341753 CREB1P16220 341 aa24.14■■□□□ 1.45
TRIM28-202ENST00000341753 PTGIRP43119 386 aa24.14■■□□□ 1.45
TRIM28-202ENST00000341753 PRELID2Q8N945 189 aa24.14■■□□□ 1.45
TRIM28-202ENST00000341753 ALG6Q9Y672 507 aa24.14■■□□□ 1.45
TRIM28-202ENST00000341753 TCRBV7S2A1N4TA0A589 114 aa24.13■■□□□ 1.45
TRIM28-202ENST00000341753 TBCAO75347 108 aaKnown RBP24.13■■□□□ 1.45
TRIM28-202ENST00000341753 NEBLO76041 1014 aa24.13■■□□□ 1.45
TRIM28-202ENST00000341753 TNFAIP3P21580 790 aa24.13■■□□□ 1.45
TRIM28-202ENST00000341753 CPNE8Q86YQ8 564 aa24.13■■□□□ 1.45
TRIM28-202ENST00000341753 PIGOQ8TEQ8 1089 aa24.13■■□□□ 1.45
TRIM28-202ENST00000341753 GPR88Q9GZN0 384 aa24.13■■□□□ 1.45
TRIM28-202ENST00000341753 SLC24A3Q9HC58 644 aa24.13■■□□□ 1.45
TRIM28-202ENST00000341753 RGL1Q9NZL6 768 aa24.13■■□□□ 1.45
TRIM28-202ENST00000341753 PLIN4Q96Q06 1357 aa24.13■■□□□ 1.45
TRIM28-202ENST00000341753 ARFGEF1Q9Y6D6 1849 aa24.13■■□□□ 1.45
TRIM28-202ENST00000341753 FAM187AA6NFU0 413 aa24.13■■□□□ 1.45
TRIM28-202ENST00000341753 A8MUI8 341 aa24.13■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms