RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 UGGT1Q9NYU2 1555 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 CLDN3O15551 220 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 BMP3P12645 472 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 INPP1P49441 399 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 RNASELQ05823 741 aaKnown RBP9.27□□□□□ -0.93
RTN3-202ENST00000339997 KIF19Q2TAC6 998 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 ARL6IP4Q66PJ3 421 aaKnown RBP9.27□□□□□ -0.93
RTN3-202ENST00000339997 OLFML2BQ68BL8 750 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 C16orf87Q6PH81 154 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 NYAP1Q6ZVC0 841 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 NOP9Q86U38 636 aaKnown RBP9.27□□□□□ -0.93
RTN3-202ENST00000339997 CEP95Q96GE4 821 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 CENPKQ9BS16 269 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 DLGAP2Q9P1A6 1054 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 APOBEC2Q9Y235 224 aaKnown RBP9.27□□□□□ -0.93
RTN3-202ENST00000339997 ATP10AO60312 1499 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 ZSCAN5CA6NGD5 496 aaPredicted RBP9.27□□□□□ -0.93
RTN3-202ENST00000339997 GSG1L2A8MUP6 293 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 PODXLO00592 558 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 NEMP1O14524 444 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 SLC9A1P19634 815 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 YY1P25490 414 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 ARPP19P56211 112 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 GPC5P78333 572 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 ANKRD20A4Q4UJ75 823 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 ANKRD20A8PQ5CZ79 823 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 ANKRD20A2Q5SQ80 823 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 ANKRD20A1Q5TYW2 823 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 ANGPTL8Q6UXH0 198 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 LRRC31Q6UY01 552 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 CYFIP1Q7L576 1253 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 UBN1Q9NPG3 1134 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 GTSE1Q9NYZ3 720 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 CAPN11Q9UMQ6 739 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 AXIN2Q9Y2T1 843 aa9.27□□□□□ -0.93
RTN3-202ENST00000339997 K7ERI5 159 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 NVLO15381 856 aaKnown RBP9.26□□□□□ -0.93
RTN3-202ENST00000339997 CYP26A1O43174 497 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 CREB3O43889 395 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 KLRC1P26715 233 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 OVGP1Q12889 678 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 ASPRV1Q53RT3 343 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 KRT27Q7Z3Y8 459 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 SRBD1Q8N5C6 995 aaKnown RBP9.26□□□□□ -0.93
RTN3-202ENST00000339997 A0A1B0GTH6 734 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 KRT37O76014 449 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 CTDNEP1O95476 244 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 ATP6V1B1P15313 513 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 GLE1Q53GS7 698 aaKnown RBP9.26□□□□□ -0.93
RTN3-202ENST00000339997 GJB7Q6PEY0 223 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 RASSF3Q86WH2 238 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 GALNT4Q8N4A0 578 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 SLC17A8Q8NDX2 589 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 PIGBQ92521 554 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 FAM81BQ96LP2 452 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 SLC40A1Q9NP59 571 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 RHBDL2Q9NX52 303 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 SCAF8Q9UPN6 1271 aaKnown RBP9.26□□□□□ -0.93
RTN3-202ENST00000339997 PPLO60437 1756 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 MAP3K6O95382 1288 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 FOSP01100 380 aaPredicted RBP9.26□□□□□ -0.93
RTN3-202ENST00000339997 GH2P01242 217 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 NR1I3Q14994 352 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 PFKFB3Q16875 520 aaPredicted RBP9.26□□□□□ -0.93
RTN3-202ENST00000339997 COBLL1Q53SF7 1204 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 IZUMO3Q5VZ72 239 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 GADL1Q6ZQY3 521 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 SPATA21Q7Z572 469 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 REXO1L1PQ8IX06 675 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 RHOT2Q8IXI1 618 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 LACRTQ9GZZ8 138 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 NDE1Q9NXR1 346 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 IQANK1A0A1B0GTG1 560 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 H7C1W4 665 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 TLR3O15455 904 aaKnown RBP9.26□□□□□ -0.93
RTN3-202ENST00000339997 CYP27B1O15528 508 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 ZCCHC18P0CG32 403 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 PGM1P36871 562 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 MDM2Q00987 491 aaPredicted RBP9.26□□□□□ -0.93
RTN3-202ENST00000339997 KRT17Q04695 432 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 GRAMD4Q6IC98 578 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 TMEM154Q6P9G4 183 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 IFNEQ86WN2 208 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 ICA1LQ8NDH6 482 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 BPIFA3Q9BQP9 254 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 ANGPTL3Q9Y5C1 460 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 STK24Q9Y6E0 443 aa9.26□□□□□ -0.93
RTN3-202ENST00000339997 CAMSAP1Q5T5Y3 1602 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 BAZ2BQ9UIF8 2168 aaKnown RBP9.25□□□□□ -0.93
RTN3-202ENST00000339997 GOLGA8CPA6NN73 597 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 LPXNO60711 386 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 ARL4AP40617 200 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 YWHAEP62258 255 aaKnown RBP9.25□□□□□ -0.93
RTN3-202ENST00000339997 MKRN3Q13064 507 aaKnown RBP9.25□□□□□ -0.93
RTN3-202ENST00000339997 DNAJC3Q13217 504 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 SLC29A2Q14542 456 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 RWDD4Q6NW29 188 aaKnown RBP9.25□□□□□ -0.93
RTN3-202ENST00000339997 PDXDC2PQ6P474 469 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 CATSPER3Q86XQ3 398 aa9.25□□□□□ -0.93
RTN3-202ENST00000339997 CELF1Q92879 486 aaKnown RBP9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms