RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 ALDH1A1P00352 501 aa16.91■□□□□ 0.3
LIMS1-202ENST00000338045 ADSSP30520 456 aa16.91■□□□□ 0.3
LIMS1-202ENST00000338045 MEA1Q16626 185 aa16.91■□□□□ 0.3
LIMS1-202ENST00000338045 SLC39A4Q6P5W5 647 aa16.91■□□□□ 0.3
LIMS1-202ENST00000338045 TMTC1Q8IUR5 882 aa16.91■□□□□ 0.3
LIMS1-202ENST00000338045 XXYLT1Q8NBI6 393 aa16.91■□□□□ 0.3
LIMS1-202ENST00000338045 APBA2Q99767 749 aa16.91■□□□□ 0.3
LIMS1-202ENST00000338045 JPH2Q9BR39 696 aaPredicted RBP16.91■□□□□ 0.3
LIMS1-202ENST00000338045 C16orf70Q9BSU1 422 aa16.91■□□□□ 0.3
LIMS1-202ENST00000338045 RNPEPQ9H4A4 650 aa16.91■□□□□ 0.3
LIMS1-202ENST00000338045 FAM207AQ9NSI2 230 aaPredicted RBP16.91■□□□□ 0.3
LIMS1-202ENST00000338045 HSPBP1Q9NZL4 362 aa16.91■□□□□ 0.3
LIMS1-202ENST00000338045 GTPBP10A4D1E9 387 aaKnown RBP16.9■□□□□ 0.3
LIMS1-202ENST00000338045 ANKRD63C9JTQ0 380 aa16.9■□□□□ 0.3
LIMS1-202ENST00000338045 TNPO2O14787 897 aaKnown RBP16.9■□□□□ 0.3
LIMS1-202ENST00000338045 ADCY6O43306 1168 aa16.9■□□□□ 0.3
LIMS1-202ENST00000338045 ZNF865P0CJ78 1059 aaPredicted RBP16.9■□□□□ 0.3
LIMS1-202ENST00000338045 CTGFP29279 349 aa16.9■□□□□ 0.3
LIMS1-202ENST00000338045 NOGQ13253 232 aa16.9■□□□□ 0.3
LIMS1-202ENST00000338045 MKRN4PQ13434 485 aaPredicted RBP16.9■□□□□ 0.3
LIMS1-202ENST00000338045 DRP2Q13474 957 aa16.9■□□□□ 0.3
LIMS1-202ENST00000338045 DCAF17Q5H9S7 520 aaPredicted RBP16.9■□□□□ 0.3
LIMS1-202ENST00000338045 TCP11Q8WWU5 503 aa16.9■□□□□ 0.3
LIMS1-202ENST00000338045 TRPC6Q9Y210 931 aa16.9■□□□□ 0.3
LIMS1-202ENST00000338045 GNEQ9Y223 722 aaKnown RBP16.9■□□□□ 0.3
LIMS1-202ENST00000338045 SIP14410 1827 aa16.9■□□□□ 0.3
LIMS1-202ENST00000338045 SOWAHDA6NJG2 315 aa16.9■□□□□ 0.3
LIMS1-202ENST00000338045 RRP9O43818 475 aaKnown RBP16.9■□□□□ 0.3
LIMS1-202ENST00000338045 OFD1O75665 1012 aa16.9■□□□□ 0.3
LIMS1-202ENST00000338045 ECM2O94769 699 aaPredicted RBP16.9■□□□□ 0.3
LIMS1-202ENST00000338045 NOL4O94818 638 aa16.9■□□□□ 0.3
LIMS1-202ENST00000338045 PIGRP01833 764 aa16.9■□□□□ 0.3
LIMS1-202ENST00000338045 MMP3P08254 477 aa16.9■□□□□ 0.3
LIMS1-202ENST00000338045 HNRNPH3P31942 346 aaKnown RBP16.9■□□□□ 0.3
LIMS1-202ENST00000338045 TNFAIP2Q03169 654 aa16.9■□□□□ 0.3
LIMS1-202ENST00000338045 BFSP1Q12934 665 aa16.9■□□□□ 0.3
LIMS1-202ENST00000338045 CAPSQ13938 189 aa16.9■□□□□ 0.3
LIMS1-202ENST00000338045 CCL14Q16627 93 aa16.9■□□□□ 0.3
LIMS1-202ENST00000338045 ZNF484Q5JVG2 852 aa16.9■□□□□ 0.3
LIMS1-202ENST00000338045 DPY19L2P1Q6NXN4 242 aa16.9■□□□□ 0.3
LIMS1-202ENST00000338045 CYP26C1Q6V0L0 522 aa16.9■□□□□ 0.3
LIMS1-202ENST00000338045 INTS8Q75QN2 995 aaKnown RBP16.9■□□□□ 0.3
LIMS1-202ENST00000338045 ZNF397Q8NF99 534 aaPredicted RBP16.9■□□□□ 0.3
LIMS1-202ENST00000338045 NEK11Q8NG66 645 aa16.9■□□□□ 0.3
LIMS1-202ENST00000338045 DEPTORQ8TB45 409 aa16.9■□□□□ 0.3
LIMS1-202ENST00000338045 PCIF1Q9H4Z3 704 aa16.9■□□□□ 0.3
LIMS1-202ENST00000338045 TMEM134Q9H6X4 195 aa16.9■□□□□ 0.3
LIMS1-202ENST00000338045 ADCY3O60266 1144 aa16.89■□□□□ 0.29
LIMS1-202ENST00000338045 CYP2B6P20813 491 aa16.89■□□□□ 0.29
LIMS1-202ENST00000338045 MXD4Q14582 209 aaPredicted RBP16.89■□□□□ 0.29
LIMS1-202ENST00000338045 TCERG1LQ5VWI1 586 aa16.89■□□□□ 0.29
LIMS1-202ENST00000338045 WDR59Q6PJI9 974 aa16.89■□□□□ 0.29
LIMS1-202ENST00000338045 RAD9BQ6WBX8 426 aa16.89■□□□□ 0.29
LIMS1-202ENST00000338045 OR6J1Q8NGC5 347 aa16.89■□□□□ 0.29
LIMS1-202ENST00000338045 PRPF31Q8WWY3 499 aaKnown RBP16.89■□□□□ 0.29
LIMS1-202ENST00000338045 PSPC1Q8WXF1 523 aaKnown RBP16.89■□□□□ 0.29
LIMS1-202ENST00000338045 BAP1Q92560 729 aa16.89■□□□□ 0.29
LIMS1-202ENST00000338045 FBXL18Q96ME1 805 aa16.89■□□□□ 0.29
LIMS1-202ENST00000338045 PLCB1Q9NQ66 1216 aa16.89■□□□□ 0.29
LIMS1-202ENST00000338045 LRRIQ4A6NIV6 560 aa16.88■□□□□ 0.29
LIMS1-202ENST00000338045 CCP110O43303 1012 aa16.88■□□□□ 0.29
LIMS1-202ENST00000338045 GARTP22102 1010 aa16.88■□□□□ 0.29
LIMS1-202ENST00000338045 CDK17Q00537 523 aa16.88■□□□□ 0.29
LIMS1-202ENST00000338045 PRAMEF19Q5SWL8 479 aa16.88■□□□□ 0.29
LIMS1-202ENST00000338045 PAXIP1Q6ZW49 1069 aaPredicted RBP16.88■□□□□ 0.29
LIMS1-202ENST00000338045 PPP1R13BQ96KQ4 1090 aa16.88■□□□□ 0.29
LIMS1-202ENST00000338045 CRACR2AQ9BSW2 395 aa16.88■□□□□ 0.29
LIMS1-202ENST00000338045 LSM14BQ9BX40 385 aaKnown RBP16.88■□□□□ 0.29
LIMS1-202ENST00000338045 TRMT1Q9NXH9 659 aaKnown RBP16.88■□□□□ 0.29
LIMS1-202ENST00000338045 CEP72Q9P209 647 aa16.88■□□□□ 0.29
LIMS1-202ENST00000338045 ZNF215Q9UL58 517 aaPredicted RBP16.88■□□□□ 0.29
LIMS1-202ENST00000338045 PLAGL2Q9UPG8 496 aa16.88■□□□□ 0.29
LIMS1-202ENST00000338045 STYXL1Q9Y6J8 313 aa16.88■□□□□ 0.29
LIMS1-202ENST00000338045 COL1A2P08123 1366 aa16.88■□□□□ 0.29
LIMS1-202ENST00000338045 A6NJR5 290 aa16.88■□□□□ 0.29
LIMS1-202ENST00000338045 HNRNPDLO14979 420 aaKnown RBP16.88■□□□□ 0.29
LIMS1-202ENST00000338045 C22orf31O95567 290 aa16.88■□□□□ 0.29
LIMS1-202ENST00000338045 INSRRP14616 1297 aa16.88■□□□□ 0.29
LIMS1-202ENST00000338045 CYP2C19P33261 490 aa16.88■□□□□ 0.29
LIMS1-202ENST00000338045 STRN3Q13033 797 aa16.88■□□□□ 0.29
LIMS1-202ENST00000338045 MTF1Q14872 753 aa16.88■□□□□ 0.29
LIMS1-202ENST00000338045 DGKDQ16760 1214 aa16.88■□□□□ 0.29
LIMS1-202ENST00000338045 EXOC3L4Q17RC7 722 aa16.88■□□□□ 0.29
LIMS1-202ENST00000338045 TSR1Q2NL82 804 aaKnown RBP16.88■□□□□ 0.29
LIMS1-202ENST00000338045 CDCA2Q69YH5 1023 aaPredicted RBP16.88■□□□□ 0.29
LIMS1-202ENST00000338045 TOGARAM2Q6ZUX3 1019 aa16.88■□□□□ 0.29
LIMS1-202ENST00000338045 NYAP1Q6ZVC0 841 aa16.88■□□□□ 0.29
LIMS1-202ENST00000338045 REM2Q8IYK8 340 aaPredicted RBP16.88■□□□□ 0.29
LIMS1-202ENST00000338045 TRAPPC12Q8WVT3 735 aa16.88■□□□□ 0.29
LIMS1-202ENST00000338045 GANQ9H2C0 597 aa16.88■□□□□ 0.29
LIMS1-202ENST00000338045 PHLPP2Q6ZVD8 1323 aa16.88■□□□□ 0.29
LIMS1-202ENST00000338045 H3BRB1 525 aa16.87■□□□□ 0.29
LIMS1-202ENST00000338045 K7ERI5 159 aa16.87■□□□□ 0.29
LIMS1-202ENST00000338045 ZNF286BP0CG31 522 aa16.87■□□□□ 0.29
LIMS1-202ENST00000338045 KRT13P13646 458 aa16.87■□□□□ 0.29
LIMS1-202ENST00000338045 PON1P27169 355 aa16.87■□□□□ 0.29
LIMS1-202ENST00000338045 FMO5P49326 533 aa16.87■□□□□ 0.29
LIMS1-202ENST00000338045 LAMTOR4Q0VGL1 99 aa16.87■□□□□ 0.29
LIMS1-202ENST00000338045 GRM1Q13255 1194 aa16.87■□□□□ 0.29
LIMS1-202ENST00000338045 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms