RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 C16orf59Q7L2K0 433 aa13.15□□□□□ -0.3
SPTLC1-202ENST00000337841 CATSPER4Q7RTX7 472 aa13.15□□□□□ -0.3
SPTLC1-202ENST00000337841 FMR1NBQ8N0W7 255 aaPredicted RBP13.15□□□□□ -0.3
SPTLC1-202ENST00000337841 DAW1Q8N136 415 aa13.15□□□□□ -0.3
SPTLC1-202ENST00000337841 SLC17A8Q8NDX2 589 aa13.15□□□□□ -0.3
SPTLC1-202ENST00000337841 TIGD1Q96MW7 591 aa13.15□□□□□ -0.3
SPTLC1-202ENST00000337841 FTHL17Q9BXU8 183 aa13.15□□□□□ -0.3
SPTLC1-202ENST00000337841 AGO3Q9H9G7 860 aaKnown RBP13.15□□□□□ -0.3
SPTLC1-202ENST00000337841 PANK4Q9NVE7 773 aa13.15□□□□□ -0.3
SPTLC1-202ENST00000337841 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 PVALEFA0A1B0GWK0 134 aa13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 GTPBP6O43824 516 aaPredicted RBP13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 TRAK2O60296 914 aa13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 KINO60870 393 aaKnown RBP13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 CSDE1O75534 798 aaKnown RBP13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 BAIAP3O94812 1187 aa13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 ERLIN2O94905 339 aa13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 ABCD1P33897 745 aa13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 ZNF131P52739 623 aa13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 EPHB4P54760 987 aa13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 ASIC1P78348 528 aa13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 MAPK6Q16659 721 aa13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 CNNM4Q6P4Q7 775 aa13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 FAM228AQ86W67 206 aa13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 ENGASEQ8NFI3 743 aa13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 TMEM40Q8WWA1 233 aa13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 BSNDQ8WZ55 320 aa13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 CCDC47Q96A33 483 aaKnown RBP13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 DNAJC19Q96DA6 116 aa13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.14□□□□□ -0.311e-6■□□□□ 8.5
SPTLC1-202ENST00000337841 OSBPL7Q9BZF2 842 aa13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 TRIM9Q9C026 710 aa13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 TMEM134Q9H6X4 195 aa13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 ERVK-5Q9HDB9 667 aa13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 CHST12Q9NRB3 414 aa13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 PRMT7Q9NVM4 692 aaPredicted RBP13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 SEL1LQ9UBV2 794 aa13.14□□□□□ -0.31
SPTLC1-202ENST00000337841 SLC16A4O15374 487 aa13.13□□□□□ -0.31
SPTLC1-202ENST00000337841 MAPTP10636 758 aaKnown RBP13.13□□□□□ -0.31
SPTLC1-202ENST00000337841 LIG1P18858 919 aa13.13□□□□□ -0.31
SPTLC1-202ENST00000337841 AXLP30530 894 aa13.13□□□□□ -0.31
SPTLC1-202ENST00000337841 STRN3Q13033 797 aa13.13□□□□□ -0.31
SPTLC1-202ENST00000337841 SNW1Q13573 536 aaKnown RBP13.13□□□□□ -0.31
SPTLC1-202ENST00000337841 TMEM132AQ24JP5 1023 aa13.13□□□□□ -0.31
SPTLC1-202ENST00000337841 CDCA2Q69YH5 1023 aaPredicted RBP13.13□□□□□ -0.31
SPTLC1-202ENST00000337841 OTOP2Q7RTS6 562 aa13.13□□□□□ -0.31
SPTLC1-202ENST00000337841 FAM178BQ8IXR5 827 aa13.13□□□□□ -0.31
SPTLC1-202ENST00000337841 HERVK_113Q902F9 699 aa13.13□□□□□ -0.31
SPTLC1-202ENST00000337841 BLZF1Q9H2G9 400 aa13.13□□□□□ -0.31
SPTLC1-202ENST00000337841 LMBRD1Q9NUN5 540 aa13.13□□□□□ -0.31
SPTLC1-202ENST00000337841 MYH15Q9Y2K3 1946 aa13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 DENND3A2RUS2 1198 aa13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 ZBBXA8MT70 800 aa13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 ACKR2O00590 384 aa13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 ENPP3O14638 875 aa13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 NR1I2O75469 434 aa13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 FGFR4P22455 802 aa13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 KCNJ6P48051 423 aa13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 MBTD1Q05BQ5 628 aa13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 CUL4BQ13620 913 aa13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 SHHQ15465 462 aa13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 FAM187BQ17R55 369 aa13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 PRPF38BQ5VTL8 546 aaKnown RBP13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 CHRDL2Q6WN34 429 aa13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 STXBP4Q6ZWJ1 553 aa13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 UNC13DQ70J99 1090 aa13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 HAUS6Q7Z4H7 955 aa13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 ELOA2Q8IYF1 753 aaPredicted RBP13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 GRAMD1CQ8IYS0 662 aa13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 VWCEQ96DN2 955 aa13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 PRIMPOLQ96LW4 560 aa13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 FZD8Q9H461 694 aa13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 MINDY3Q9H8M7 445 aa13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 MRPL44Q9H9J2 332 aaKnown RBP13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 DACT1Q9NYF0 836 aa13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 PCDH10Q9P2E7 1040 aa13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 PCDHB13Q9Y5F0 798 aa13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 SLC4A7Q9Y6M7 1214 aa13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 TRIP12Q14669 1992 aaPredicted RBP13.12□□□□□ -0.31
SPTLC1-202ENST00000337841 FRMD3A2A2Y4 597 aa13.11□□□□□ -0.31
SPTLC1-202ENST00000337841 SMC2O95347 1197 aa13.11□□□□□ -0.31
SPTLC1-202ENST00000337841 AMHP03971 560 aa13.11□□□□□ -0.31
SPTLC1-202ENST00000337841 PRKCBP05771 671 aa13.11□□□□□ -0.31
SPTLC1-202ENST00000337841 SKIP12755 728 aa13.11□□□□□ -0.31
SPTLC1-202ENST00000337841 NCKAP1LP55160 1127 aa13.11□□□□□ -0.31
SPTLC1-202ENST00000337841 PSMD2Q13200 908 aa13.11□□□□□ -0.31
SPTLC1-202ENST00000337841 PRPF4BQ13523 1007 aaKnown RBP13.11□□□□□ -0.31
SPTLC1-202ENST00000337841 ZNF720Q7Z2F6 126 aa13.11□□□□□ -0.31
SPTLC1-202ENST00000337841 SFR1Q86XK3 245 aa13.11□□□□□ -0.31
SPTLC1-202ENST00000337841 TMEM161BQ8NDZ6 487 aa13.11□□□□□ -0.31
SPTLC1-202ENST00000337841 RNPC3Q96LT9 517 aaKnown RBP13.11□□□□□ -0.31
SPTLC1-202ENST00000337841 ADAM2Q99965 735 aa13.11□□□□□ -0.31
SPTLC1-202ENST00000337841 KIFC3Q9BVG8 833 aa13.11□□□□□ -0.31
SPTLC1-202ENST00000337841 TMX1Q9H3N1 280 aa13.11□□□□□ -0.31
SPTLC1-202ENST00000337841 RGS18Q9NS28 235 aa13.11□□□□□ -0.31
SPTLC1-202ENST00000337841 C1orf112Q9NSG2 853 aa13.11□□□□□ -0.31
SPTLC1-202ENST00000337841 ARHGAP28Q9P2N2 729 aa13.11□□□□□ -0.31
SPTLC1-202ENST00000337841 PIN4Q9Y237 131 aaKnown RBP13.11□□□□□ -0.31
SPTLC1-202ENST00000337841 BRCA2P51587 3418 aa13.1□□□□□ -0.31
SPTLC1-202ENST00000337841 K7ENM7 598 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms