RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 ZMAT2Q96NC0 199 aaKnown RBP10.96□□□□□ -0.66
CCDC88A-202ENST00000336838 SLC38A10Q9HBR0 1119 aa10.96□□□□□ -0.66
CCDC88A-202ENST00000336838 WDR46O15213 610 aaKnown RBP10.96□□□□□ -0.66
CCDC88A-202ENST00000336838 ITPRIPL1Q6GPH6 555 aa10.96□□□□□ -0.66
CCDC88A-202ENST00000336838 CARD9Q9H257 536 aa10.96□□□□□ -0.66
CCDC88A-202ENST00000336838 CFAP69A5D8W1 941 aa10.96□□□□□ -0.66
CCDC88A-202ENST00000336838 HSPA2P54652 639 aa10.96□□□□□ -0.66
CCDC88A-202ENST00000336838 GOLGA8FQ08AF8 430 aa10.96□□□□□ -0.66
CCDC88A-202ENST00000336838 GOLGA8DPQ0D2H9 430 aa10.96□□□□□ -0.66
CCDC88A-202ENST00000336838 SCYL2Q6P3W7 929 aa10.96□□□□□ -0.66
CCDC88A-202ENST00000336838 CEP170P1Q96L14 293 aa10.96□□□□□ -0.66
CCDC88A-202ENST00000336838 MED10Q9BTT4 135 aa10.96□□□□□ -0.66
CCDC88A-202ENST00000336838 ISCUQ9H1K1 167 aa10.96□□□□□ -0.66
CCDC88A-202ENST00000336838 ELAC2Q9BQ52 826 aaKnown RBP10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 C2orf40Q9H1Z8 148 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 FBXO40Q9UH90 709 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 ATXN2Q99700 1313 aaKnown RBP10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 HNRNPRO43390 633 aaKnown RBP10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 FNTAP49354 379 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 FAM47CQ5HY64 1035 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 RSPH3Q86UC2 560 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 ERICH1Q86X53 443 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 WDR35Q9P2L0 1181 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 ANGPTL3Q9Y5C1 460 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 O00370 1275 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 OATP04181 439 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 HIF1AQ16665 826 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 SETD3Q86TU7 594 aaPredicted RBP10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 DCP1AQ9NPI6 582 aaPredicted RBP10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 ATP5BP06576 529 aaKnown RBP10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 PPP2R5CQ13362 524 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 MORF4L2Q15014 288 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 E2F5Q15329 346 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 GDAP1Q8TB36 358 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 MTBPQ96DY7 904 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 ARHGAP26Q9UNA1 814 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 FAM47DPA6NHR8 397 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 TC2NQ8N9U0 490 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 ENGASEQ8NFI3 743 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 UIMC1Q96RL1 719 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 EML4Q9HC35 981 aaKnown RBP10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 SAYSD1Q9NPB0 183 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 PLEKHA8P1O95397 391 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 CENPCQ03188 943 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 BHMT2Q9H2M3 363 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 ECT2Q9H8V3 914 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 SEPT10Q9P0V9 454 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 CNOT8Q9UFF9 292 aaKnown RBP10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 SUN2Q9UH99 717 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 CD163L1Q9NR16 1453 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 RPSAP08865 295 aaKnown RBP10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 VSNL1P62760 191 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 THOC5Q13769 683 aaKnown RBP10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 ARID5BQ14865 1188 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 KPNB1Q14974 876 aaKnown RBP10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 SPATA21Q7Z572 469 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 RCOR2Q8IZ40 523 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 DNAAF3Q8N9W5 541 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 KDM4CQ9H3R0 1056 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 IL1RAPL1Q9NZN1 696 aa10.95□□□□□ -0.66
CCDC88A-202ENST00000336838 UBAP1LF5GYI3 381 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 ARHGDIAP52565 204 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 SLC20A2Q08357 652 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 TXNRD1Q16881 649 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 C1orf146Q5VVC0 180 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 CDKL3Q8IVW4 592 aaPredicted RBP10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 MAML3Q96JK9 1138 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 MYH1P12882 1939 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 MYH4Q9Y623 1939 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 NLRP11P59045 1033 aaKnown RBP10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 KLC1Q07866 573 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 HACD3Q9P035 362 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 E7ENQ6 273 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 K7ERI5 159 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 ATP1A1P05023 1023 aaKnown RBP10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 GFAPP14136 432 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 STILQ15468 1287 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 KIAA1755Q5JYT7 1200 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 TBC1D1Q86TI0 1168 aaPredicted RBP10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 CALN1Q9BXU9 219 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 NSMCE4AQ9NXX6 385 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 NDUFA13Q9P0J0 144 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 HERC5Q9UII4 1024 aaKnown RBP10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 LMO7Q8WWI1 1683 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 USP27XA6NNY8 438 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 TOM1L1O75674 476 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 SERPINB2P05120 415 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 VAMP7P51809 220 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 CYB5R4Q7L1T6 521 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 FGD4Q96M96 766 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 RPF1Q9H9Y2 349 aaKnown RBP10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 ETNK1Q9HBU6 452 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 H2AFYO75367 372 aaKnown RBP10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 FXR2P51116 673 aaKnown RBP eCLIP10.94□□□□□ -0.662e-7■■■□□ 17
CCDC88A-202ENST00000336838 COPS2P61201 443 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 CMTM5Q96DZ9 223 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 DNAJC17Q9NVM6 304 aaKnown RBP10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 TBK1Q9UHD2 729 aa10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 MTO1Q9Y2Z2 717 aaKnown RBP10.94□□□□□ -0.66
CCDC88A-202ENST00000336838 CEP170BQ9Y4F5 1589 aaPredicted RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms