RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 PKD2L1Q9P0L9 805 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 PARP2Q9UGN5 583 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 MUTYHQ9UIF7 546 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 SCML1Q9UN30 329 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 DNM3Q9UQ16 869 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 WNT6Q9Y6F9 365 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 IVNS1ABPQ9Y6Y0 642 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 TMEM131Q92545 1883 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 ITIH6Q6UXX5 1313 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 LOC101059915A0A1B0GWI6 518 aaPredicted RBP1.89□□□□□ -2.11
LINC00643-201ENST00000334389 STK25O00506 426 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 TCEA3O75764 348 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 CEACAM4O75871 244 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 HLA-DOAP06340 250 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 IFIT1P09914 478 aaKnown RBP1.89□□□□□ -2.11
LINC00643-201ENST00000334389 ELNP15502 786 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 FCARP24071 287 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 AMPD2Q01433 879 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 ELAVL2Q12926 359 aaKnown RBP1.89□□□□□ -2.11
LINC00643-201ENST00000334389 BROXQ5VW32 411 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 FBXL19Q6PCT2 694 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 DCLRE1AQ6PJP8 1040 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 ZNF852Q6ZMS4 543 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 MORC1Q86VD1 984 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 CARFQ8N187 725 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 ENAHQ8N8S7 591 aaPredicted RBP1.89□□□□□ -2.11
LINC00643-201ENST00000334389 GOLGA6L2Q8N9W4 650 aaPredicted RBP1.89□□□□□ -2.11
LINC00643-201ENST00000334389 KLHDC4Q8TBB5 520 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 OTUB2Q96DC9 234 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 KANSL2Q9H9L4 492 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 TMEM9BQ9NQ34 198 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 MARK1Q9P0L2 795 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 SEPT3Q9UH03 358 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 CDH7Q9ULB5 785 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 CSNK1G3Q9Y6M4 447 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 CACNA1IQ9P0X4 2223 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 USP24Q9UPU5 2620 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 NCOA6Q14686 2063 aaPredicted RBP1.89□□□□□ -2.11
LINC00643-201ENST00000334389 MCM3APO60318 1980 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 C9IYK1 514 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 MSI1O43347 362 aaKnown RBP1.89□□□□□ -2.11
LINC00643-201ENST00000334389 BCAR3O75815 825 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 LATS1O95835 1130 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 ASGR2P07307 311 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 SYPP08247 313 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 SNRPBP14678 240 aaKnown RBP1.89□□□□□ -2.11
LINC00643-201ENST00000334389 CSF2RAP15509 400 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 SHMT1P34896 483 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 CCNFP41002 786 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 CASRP41180 1078 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 IFNAR2P48551 515 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 ZBTB16Q05516 673 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 TTLL4Q14679 1199 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 TMEM196Q5HYL7 178 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 SNX30Q5VWJ9 437 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 EGFLAMQ63HQ2 1017 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 CES5AQ6NT32 575 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 ZNF410Q86VK4 478 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 MCF2L2Q86YR7 1114 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 PLPP6Q8IY26 295 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 TRMT2AQ8IZ69 625 aaKnown RBP1.89□□□□□ -2.11
LINC00643-201ENST00000334389 ANKRD44Q8N8A2 993 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 ARL14EPQ8N8R7 260 aaPredicted RBP1.89□□□□□ -2.11
LINC00643-201ENST00000334389 PRPF38AQ8NAV1 312 aaKnown RBP1.89□□□□□ -2.11
LINC00643-201ENST00000334389 KAT2BQ92831 832 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 CHAMP1Q96JM3 812 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 DNAJC18Q9H819 358 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 TBC1D17Q9HA65 648 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 USP36Q9P275 1121 aaKnown RBP1.89□□□□□ -2.11
LINC00643-201ENST00000334389 ARPP21Q9UBL0 812 aaPredicted RBP1.89□□□□□ -2.11
LINC00643-201ENST00000334389 RAB23Q9ULC3 237 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 TTF2Q9UNY4 1162 aaKnown RBP1.89□□□□□ -2.11
LINC00643-201ENST00000334389 SIT1Q9Y3P8 196 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 DOCK8Q8NF50 2099 aa1.89□□□□□ -2.11
LINC00643-201ENST00000334389 NAV3Q8IVL0 2385 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 PALM2-AKAP2B1ALY0 433 aaPredicted RBP1.88□□□□□ -2.11
LINC00643-201ENST00000334389 IPO5O00410 1097 aaKnown RBP1.88□□□□□ -2.11
LINC00643-201ENST00000334389 ZNF197O14709 1029 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 SLC7A4O43246 635 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 BRD1O95696 1058 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 OATP04181 439 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 CHRNB1P11230 501 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 TUBP50607 506 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 MARSP56192 900 aaKnown RBP1.88□□□□□ -2.11
LINC00643-201ENST00000334389 KCNQ4P56696 695 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 DSC1Q08554 894 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 OVGP1Q12889 678 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 MTA1Q13330 715 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 ORC2Q13416 577 aaPredicted RBP1.88□□□□□ -2.11
LINC00643-201ENST00000334389 CCINQ13939 588 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 PDGFRLQ15198 375 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 ZC3H12BQ5HYM0 836 aaKnown RBP1.88□□□□□ -2.11
LINC00643-201ENST00000334389 ZNF484Q5JVG2 852 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 MOXD1Q6UVY6 613 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 GPR155Q7Z3F1 870 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 RSPH3Q86UC2 560 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 DCP2Q8IU60 420 aaKnown RBP1.88□□□□□ -2.11
LINC00643-201ENST00000334389 AEBP1Q8IUX7 1158 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 FBXL16Q8N461 479 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 USHBP1Q8N6Y0 703 aa1.88□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms