RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 IL25Q9H293 177 aa10.88□□□□□ -0.67
CHD3-201ENST00000330494 JPH1Q9HDC5 661 aaPredicted RBP10.88□□□□□ -0.67
CHD3-201ENST00000330494 KLHL8Q9P2G9 620 aaPredicted RBP10.88□□□□□ -0.67
CHD3-201ENST00000330494 POLRMTO00411 1230 aaKnown RBP10.88□□□□□ -0.67
CHD3-201ENST00000330494 PPP1R12AO14974 1030 aaPredicted RBP10.88□□□□□ -0.67
CHD3-201ENST00000330494 TJP3O95049 919 aa10.88□□□□□ -0.67
CHD3-201ENST00000330494 ATP2C1P98194 919 aaPredicted RBP10.88□□□□□ -0.67
CHD3-201ENST00000330494 RASIP1Q5U651 963 aa10.88□□□□□ -0.67
CHD3-201ENST00000330494 SPZ1Q9BXG8 430 aa10.88□□□□□ -0.67
CHD3-201ENST00000330494 SIK2Q9H0K1 926 aa10.88□□□□□ -0.67
CHD3-201ENST00000330494 DIP2CQ9Y2E4 1556 aa10.88□□□□□ -0.67
CHD3-201ENST00000330494 KITP10721 976 aa10.88□□□□□ -0.67
CHD3-201ENST00000330494 GPC5P78333 572 aa10.88□□□□□ -0.67
CHD3-201ENST00000330494 AP1B1Q10567 949 aa10.88□□□□□ -0.67
CHD3-201ENST00000330494 E2F5Q15329 346 aa10.88□□□□□ -0.67
CHD3-201ENST00000330494 RSBN1LQ6PCB5 846 aaPredicted RBP10.88□□□□□ -0.67
CHD3-201ENST00000330494 SCYL3Q8IZE3 742 aa10.88□□□□□ -0.67
CHD3-201ENST00000330494 HERC5Q9UII4 1024 aaKnown RBP10.88□□□□□ -0.67
CHD3-201ENST00000330494 FBXO2Q9UK22 296 aaPredicted RBP10.88□□□□□ -0.67
CHD3-201ENST00000330494 AGO2Q9UKV8 859 aaKnown RBP10.88□□□□□ -0.67
CHD3-201ENST00000330494 PNPLA7Q6ZV29 1317 aa10.88□□□□□ -0.67
CHD3-201ENST00000330494 IQSEC2Q5JU85 1478 aa10.88□□□□□ -0.67
CHD3-201ENST00000330494 STRIP1Q5VSL9 837 aa10.87□□□□□ -0.67
CHD3-201ENST00000330494 SLC30A5Q8TAD4 765 aa10.87□□□□□ -0.67
CHD3-201ENST00000330494 ZNF564Q8TBZ8 553 aaPredicted RBP10.87□□□□□ -0.67
CHD3-201ENST00000330494 TTC26A0AVF1 554 aa10.87□□□□□ -0.67
CHD3-201ENST00000330494 NTSR2O95665 410 aa10.87□□□□□ -0.67
CHD3-201ENST00000330494 FAM167AQ96KS9 214 aa10.87□□□□□ -0.67
CHD3-201ENST00000330494 SUN1O94901 812 aa10.87□□□□□ -0.67
CHD3-201ENST00000330494 KRT3P12035 628 aa10.87□□□□□ -0.67
CHD3-201ENST00000330494 DPEP1P16444 411 aa10.87□□□□□ -0.67
CHD3-201ENST00000330494 PSMC1P62191 440 aaKnown RBP10.87□□□□□ -0.67
CHD3-201ENST00000330494 ZNF543Q08ER8 600 aa10.87□□□□□ -0.67
CHD3-201ENST00000330494 PPP1R18Q6NYC8 613 aa10.87□□□□□ -0.67
CHD3-201ENST00000330494 DPF2Q92785 391 aa10.87□□□□□ -0.67
CHD3-201ENST00000330494 KIF2CQ99661 725 aa10.87□□□□□ -0.67
CHD3-201ENST00000330494 PLAAQ9Y263 795 aa10.87□□□□□ -0.67
CHD3-201ENST00000330494 UPP2O95045 317 aa10.87□□□□□ -0.67
CHD3-201ENST00000330494 SPDL1Q96EA4 605 aa10.87□□□□□ -0.67
CHD3-201ENST00000330494 TOPORSQ9NS56 1045 aaPredicted RBP10.87□□□□□ -0.67
CHD3-201ENST00000330494 LMCD1Q9NZU5 365 aa10.87□□□□□ -0.67
CHD3-201ENST00000330494 USP31Q70CQ4 1352 aa10.87□□□□□ -0.67
CHD3-201ENST00000330494 WDR19Q8NEZ3 1342 aa10.87□□□□□ -0.67
CHD3-201ENST00000330494 CCDC195A0A1B0GUA6 201 aa10.87□□□□□ -0.67
CHD3-201ENST00000330494 ESYT3A0FGR9 886 aa10.87□□□□□ -0.67
CHD3-201ENST00000330494 TNFAIP2Q03169 654 aa10.87□□□□□ -0.67
CHD3-201ENST00000330494 METTL16Q86W50 562 aaKnown RBP10.87□□□□□ -0.67
CHD3-201ENST00000330494 CCDC197Q8NCU1 140 aa10.87□□□□□ -0.67
CHD3-201ENST00000330494 LRGUKQ96M69 825 aa10.87□□□□□ -0.67
CHD3-201ENST00000330494 ZMAT2Q96NC0 199 aaKnown RBP10.87□□□□□ -0.67
CHD3-201ENST00000330494 SARS2Q9NP81 518 aaKnown RBP10.87□□□□□ -0.67
CHD3-201ENST00000330494 FAM8A1Q9UBU6 413 aa10.87□□□□□ -0.67
CHD3-201ENST00000330494 RASGRF2O14827 1237 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 CYP26A1O43174 497 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 KRT33BQ14525 404 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 PDZD8Q8NEN9 1154 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 URGCPQ8TCY9 931 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 PIN4Q9Y237 131 aaKnown RBP10.86□□□□□ -0.67
CHD3-201ENST00000330494 NVLO15381 856 aaKnown RBP10.86□□□□□ -0.67
CHD3-201ENST00000330494 SFNP31947 248 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 GMPSP49915 693 aaPredicted RBP10.86□□□□□ -0.67
CHD3-201ENST00000330494 N4BP2L2Q92802 583 aaPredicted RBP10.86□□□□□ -0.67
CHD3-201ENST00000330494 CRAMP1Q96RY5 1269 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 GOLGA8CPA6NN73 597 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 UBE2Q2LH0YL09 131 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 ZNF157P51786 506 aaPredicted RBP10.86□□□□□ -0.67
CHD3-201ENST00000330494 CASP8Q14790 479 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 SGMS1Q86VZ5 419 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 AGBL1Q96MI9 1066 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 SUCLA2Q9P2R7 463 aaPredicted RBP10.86□□□□□ -0.67
CHD3-201ENST00000330494 A8MXQ7 604 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 TNPO2O14787 897 aaKnown RBP10.86□□□□□ -0.67
CHD3-201ENST00000330494 ZRANB2O95218 330 aaKnown RBP eCLIP10.86□□□□□ -0.67
CHD3-201ENST00000330494 PDHBP11177 359 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 TSPY1Q01534 308 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 ZC2HC1CQ53FD0 456 aaPredicted RBP10.86□□□□□ -0.67
CHD3-201ENST00000330494 ZNF449Q6P9G9 518 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 HAUS6Q7Z4H7 955 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 PROM2Q8N271 834 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 SPDYE1Q8NFV5 336 aaPredicted RBP10.86□□□□□ -0.67
CHD3-201ENST00000330494 CXorf38Q8TB03 319 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 TTC17Q96AE7 1141 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 NUDCD1Q96RS6 583 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 PLA2G12BQ9BX93 195 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 PRR12Q9ULL5 1215 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 SCINQ9Y6U3 715 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 MFSD14CQ5VZR4 134 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 FAM117BQ6P1L5 589 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 CENPUQ71F23 418 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 GLYCTKQ8IVS8 523 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 GPD1LQ8N335 351 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 TMEM35BQ8NCS4 154 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 ZNF280CQ8ND82 737 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 MS4A14Q96JA4 679 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 XAB2Q9HCS7 855 aaKnown RBP10.86□□□□□ -0.67
CHD3-201ENST00000330494 PCDHA10Q9Y5I2 948 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 RIMBP3CA6NJZ7 1639 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 RIMBP3BA6NNM3 1639 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 RIMBP3Q9UFD9 1639 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 CFLARO15519 480 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms