RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 DCAF8L1A6NGE4 600 aa20.13■□□□□ 0.81
USP39-201ENST00000323701 KIF3CO14782 793 aa20.13■□□□□ 0.81
USP39-201ENST00000323701 ADRB2P07550 413 aa20.13■□□□□ 0.81
USP39-201ENST00000323701 SMPD1P17405 629 aa20.13■□□□□ 0.81
USP39-201ENST00000323701 C1orf220Q5T0J3 134 aa20.13■□□□□ 0.81
USP39-201ENST00000323701 LRRC71Q8N4P6 559 aa20.13■□□□□ 0.81
USP39-201ENST00000323701 TMEM174Q8WUU8 243 aa20.13■□□□□ 0.81
USP39-201ENST00000323701 BBXQ8WY36 941 aaPredicted RBP20.13■□□□□ 0.81
USP39-201ENST00000323701 ZNF592Q92610 1267 aa20.13■□□□□ 0.81
USP39-201ENST00000323701 SAAL1Q96ER3 474 aa20.13■□□□□ 0.81
USP39-201ENST00000323701 IFT74Q96LB3 600 aa20.13■□□□□ 0.81
USP39-201ENST00000323701 AJAP1Q9UKB5 411 aaPredicted RBP20.13■□□□□ 0.81
USP39-201ENST00000323701 PLAGL2Q9UPG8 496 aa20.13■□□□□ 0.81
USP39-201ENST00000323701 SLC15A5A6NIM6 579 aa20.12■□□□□ 0.81
USP39-201ENST00000323701 TLR2O60603 784 aa20.12■□□□□ 0.81
USP39-201ENST00000323701 GRM1Q13255 1194 aa20.12■□□□□ 0.81
USP39-201ENST00000323701 CBWD2Q8IUF1 395 aa20.12■□□□□ 0.81
USP39-201ENST00000323701 SLC17A8Q8NDX2 589 aa20.12■□□□□ 0.81
USP39-201ENST00000323701 IRX2Q9BZI1 471 aaPredicted RBP20.12■□□□□ 0.81
USP39-201ENST00000323701 SIX2Q9NPC8 291 aa20.12■□□□□ 0.81
USP39-201ENST00000323701 ARHGAP20Q9P2F6 1191 aa20.12■□□□□ 0.81
USP39-201ENST00000323701 TFR2Q9UP52 801 aa20.12■□□□□ 0.81
USP39-201ENST00000323701 UQCRHLA0A096LP55 91 aa20.12■□□□□ 0.81
USP39-201ENST00000323701 LRRN2O75325 713 aa20.12■□□□□ 0.81
USP39-201ENST00000323701 UQCRHP07919 91 aa20.12■□□□□ 0.81
USP39-201ENST00000323701 GJB1P08034 283 aa20.12■□□□□ 0.81
USP39-201ENST00000323701 CTGFP29279 349 aa20.12■□□□□ 0.81
USP39-201ENST00000323701 HNRNPH3P31942 346 aaKnown RBP20.12■□□□□ 0.81
USP39-201ENST00000323701 BFSP1Q12934 665 aa20.12■□□□□ 0.81
USP39-201ENST00000323701 MYBPC2Q14324 1141 aa20.12■□□□□ 0.81
USP39-201ENST00000323701 CCL14Q16627 93 aa20.12■□□□□ 0.81
USP39-201ENST00000323701 XXYLT1Q8NBI6 393 aa20.12■□□□□ 0.81
USP39-201ENST00000323701 PRPF31Q8WWY3 499 aaKnown RBP20.12■□□□□ 0.81
USP39-201ENST00000323701 SUGCTQ9HAC7 445 aa20.12■□□□□ 0.81
USP39-201ENST00000323701 EPN1Q9Y6I3 576 aaPredicted RBP20.12■□□□□ 0.81
USP39-201ENST00000323701 LRRIQ4A6NIV6 560 aa20.11■□□□□ 0.81
USP39-201ENST00000323701 ZSCAN12O43309 604 aa20.11■□□□□ 0.81
USP39-201ENST00000323701 LGALS2P05162 132 aa20.11■□□□□ 0.81
USP39-201ENST00000323701 ZNF286BP0CG31 522 aa20.11■□□□□ 0.81
USP39-201ENST00000323701 RFC5P40937 340 aa20.11■□□□□ 0.81
USP39-201ENST00000323701 FMO5P49326 533 aa20.11■□□□□ 0.81
USP39-201ENST00000323701 CRHR2Q13324 411 aa20.11■□□□□ 0.81
USP39-201ENST00000323701 ACVR2BQ13705 512 aa20.11■□□□□ 0.81
USP39-201ENST00000323701 CAPSQ13938 189 aa20.11■□□□□ 0.81
USP39-201ENST00000323701 EXOC3L4Q17RC7 722 aa20.11■□□□□ 0.81
USP39-201ENST00000323701 PDXDC1Q6P996 788 aa20.11■□□□□ 0.81
USP39-201ENST00000323701 GJB7Q6PEY0 223 aa20.11■□□□□ 0.81
USP39-201ENST00000323701 NHEJ1Q9H9Q4 299 aaPredicted RBP20.11■□□□□ 0.81
USP39-201ENST00000323701 GPBP1L1Q9HC44 474 aaPredicted RBP20.11■□□□□ 0.81
USP39-201ENST00000323701 CEP72Q9P209 647 aa20.11■□□□□ 0.81
USP39-201ENST00000323701 ZHX1Q9UKY1 873 aaPredicted RBP20.11■□□□□ 0.81
USP39-201ENST00000323701 ABT1Q9ULW3 272 aaKnown RBP20.11■□□□□ 0.81
USP39-201ENST00000323701 TTLL13PA6NNM8 815 aa20.11■□□□□ 0.81
USP39-201ENST00000323701 NDUFA10O95299 355 aa20.11■□□□□ 0.81
USP39-201ENST00000323701 GH1P01241 217 aa20.11■□□□□ 0.81
USP39-201ENST00000323701 CCDC175P0C221 793 aa20.11■□□□□ 0.81
USP39-201ENST00000323701 PPP2R3AQ06190 1150 aa20.11■□□□□ 0.81
USP39-201ENST00000323701 LAMC2Q13753 1193 aa20.11■□□□□ 0.81
USP39-201ENST00000323701 SYT10Q6XYQ8 523 aa20.11■□□□□ 0.81
USP39-201ENST00000323701 ZNF397Q8NF99 534 aaPredicted RBP20.11■□□□□ 0.81
USP39-201ENST00000323701 HVCN1Q96D96 273 aa20.11■□□□□ 0.81
USP39-201ENST00000323701 FAM167AQ96KS9 214 aa20.11■□□□□ 0.81
USP39-201ENST00000323701 SMARCAD1Q9H4L7 1026 aa20.11■□□□□ 0.81
USP39-201ENST00000323701 LZTFL1Q9NQ48 299 aa20.11■□□□□ 0.81
USP39-201ENST00000323701 GCNT4Q9P109 453 aa20.11■□□□□ 0.81
USP39-201ENST00000323701 HNRNPDLO14979 420 aaKnown RBP20.1■□□□□ 0.81
USP39-201ENST00000323701 IRX5P78411 483 aaPredicted RBP20.1■□□□□ 0.81
USP39-201ENST00000323701 PPP3CAQ08209 521 aa20.1■□□□□ 0.81
USP39-201ENST00000323701 KLHDC7AQ5VTJ3 777 aa20.1■□□□□ 0.81
USP39-201ENST00000323701 CACNA2D4Q7Z3S7 1137 aa20.1■□□□□ 0.81
USP39-201ENST00000323701 LENG1Q96BZ8 264 aaPredicted RBP20.1■□□□□ 0.81
USP39-201ENST00000323701 ZNF668Q96K58 619 aaPredicted RBP20.1■□□□□ 0.81
USP39-201ENST00000323701 HAPLN2Q9GZV7 340 aa20.1■□□□□ 0.81
USP39-201ENST00000323701 TRPC6Q9Y210 931 aa20.1■□□□□ 0.81
USP39-201ENST00000323701 FHOD1Q9Y613 1164 aa20.1■□□□□ 0.81
USP39-201ENST00000323701 CEP350Q5VT06 3117 aa20.1■□□□□ 0.81
USP39-201ENST00000323701 IGKV6-21A0A0C4DH24 114 aa20.1■□□□□ 0.81
USP39-201ENST00000323701 ZNF263O14978 683 aa20.1■□□□□ 0.81
USP39-201ENST00000323701 NAMPTP43490 491 aa20.1■□□□□ 0.81
USP39-201ENST00000323701 MAP2K5Q13163 448 aa20.1■□□□□ 0.81
USP39-201ENST00000323701 TSR1Q2NL82 804 aaKnown RBP20.1■□□□□ 0.81
USP39-201ENST00000323701 HGSNATQ68CP4 663 aa20.1■□□□□ 0.81
USP39-201ENST00000323701 PPTC7Q8NI37 304 aa20.1■□□□□ 0.81
USP39-201ENST00000323701 IQCDQ96DY2 449 aa20.1■□□□□ 0.81
USP39-201ENST00000323701 FAM84AQ96KN4 292 aa20.1■□□□□ 0.81
USP39-201ENST00000323701 ABHD16BQ9H3Z7 469 aa20.1■□□□□ 0.81
USP39-201ENST00000323701 ZCCHC17Q9NP64 241 aaKnown RBP20.1■□□□□ 0.81
USP39-201ENST00000323701 CGNQ9P2M7 1197 aaKnown RBP20.1■□□□□ 0.81
USP39-201ENST00000323701 EXOC7Q9UPT5 735 aa20.1■□□□□ 0.81
USP39-201ENST00000323701 ZNF236Q9UL36 1845 aa20.09■□□□□ 0.81
USP39-201ENST00000323701 RBAK-RBAKDNI3L0D1 243 aa20.09■□□□□ 0.81
USP39-201ENST00000323701 UCHL3P15374 230 aa20.09■□□□□ 0.81
USP39-201ENST00000323701 GBP6Q6ZN66 633 aa20.09■□□□□ 0.81
USP39-201ENST00000323701 USP6NLQ92738 828 aa20.09■□□□□ 0.81
USP39-201ENST00000323701 ZBTB45Q96K62 511 aaPredicted RBP20.09■□□□□ 0.81
USP39-201ENST00000323701 C16orf70Q9BSU1 422 aa20.09■□□□□ 0.81
USP39-201ENST00000323701 CYP2C19P33261 490 aa20.08■□□□□ 0.81
USP39-201ENST00000323701 PPP2R5AQ15172 486 aa20.08■□□□□ 0.81
USP39-201ENST00000323701 SNRNP35Q16560 246 aaKnown RBP20.08■□□□□ 0.81
USP39-201ENST00000323701 DUSP28Q4G0W2 176 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms