RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 PLCB3Q01970 1234 aa21.78■■□□□ 1.08
LIME1-201ENST00000309546 ZP2Q05996 745 aa21.78■■□□□ 1.08
LIME1-201ENST00000309546 TCF25Q9BQ70 676 aa21.78■■□□□ 1.08
LIME1-201ENST00000309546 AGPAT5Q9NUQ2 364 aa21.78■■□□□ 1.08
LIME1-201ENST00000309546 INPP5FQ9Y2H2 1132 aa21.78■■□□□ 1.08
LIME1-201ENST00000309546 POTEMA6NI47 508 aa21.77■■□□□ 1.08
LIME1-201ENST00000309546 FSCN2O14926 492 aa21.77■■□□□ 1.08
LIME1-201ENST00000309546 GLP2RO95838 553 aa21.77■■□□□ 1.08
LIME1-201ENST00000309546 RAB27AP51159 221 aa21.77■■□□□ 1.08
LIME1-201ENST00000309546 KRT17Q04695 432 aa21.77■■□□□ 1.08
LIME1-201ENST00000309546 SMAD2Q15796 467 aaKnown RBP21.77■■□□□ 1.08
LIME1-201ENST00000309546 C8orf34Q49A92 452 aa21.77■■□□□ 1.08
LIME1-201ENST00000309546 PDE12Q6L8Q7 609 aaKnown RBP21.77■■□□□ 1.08
LIME1-201ENST00000309546 SRGAP1Q7Z6B7 1085 aa21.77■■□□□ 1.08
LIME1-201ENST00000309546 FERMT3Q86UX7 667 aa21.77■■□□□ 1.08
LIME1-201ENST00000309546 ADHFE1Q8IWW8 467 aa21.77■■□□□ 1.08
LIME1-201ENST00000309546 RNF149Q8NC42 400 aa21.77■■□□□ 1.08
LIME1-201ENST00000309546 LLPHQ9BRT6 129 aaKnown RBP21.77■■□□□ 1.08
LIME1-201ENST00000309546 TMEM60Q9H2L4 133 aa21.77■■□□□ 1.08
LIME1-201ENST00000309546 MINDY3Q9H8M7 445 aa21.77■■□□□ 1.08
LIME1-201ENST00000309546 SPG21Q9NZD8 308 aa21.77■■□□□ 1.08
LIME1-201ENST00000309546 CLEC1BQ9P126 229 aa21.77■■□□□ 1.08
LIME1-201ENST00000309546 PRKAG3Q9UGI9 489 aa21.77■■□□□ 1.08
LIME1-201ENST00000309546 RAPGEFL1Q9UHV5 662 aa21.77■■□□□ 1.08
LIME1-201ENST00000309546 LZTS1Q9Y250 596 aa21.77■■□□□ 1.08
LIME1-201ENST00000309546 FAM86C2PA6NEL3 165 aa21.76■■□□□ 1.07
LIME1-201ENST00000309546 MEIS3P2A8K0S8 358 aa21.76■■□□□ 1.07
LIME1-201ENST00000309546 NT5C1B-RDH14C9J2C7 533 aa21.76■■□□□ 1.07
LIME1-201ENST00000309546 RBM10P98175 930 aaKnown RBP21.76■■□□□ 1.07
LIME1-201ENST00000309546 DUSP6Q16828 381 aa21.76■■□□□ 1.07
LIME1-201ENST00000309546 GLB1LQ6UWU2 654 aa21.76■■□□□ 1.07
LIME1-201ENST00000309546 MSLNLQ96KJ4 702 aa21.76■■□□□ 1.07
LIME1-201ENST00000309546 ZSCAN31Q96LW9 406 aaPredicted RBP21.76■■□□□ 1.07
LIME1-201ENST00000309546 MTMR9Q96QG7 549 aa21.76■■□□□ 1.07
LIME1-201ENST00000309546 HSD17B14Q9BPX1 270 aa21.76■■□□□ 1.07
LIME1-201ENST00000309546 TRAIPQ9BWF2 469 aa21.76■■□□□ 1.07
LIME1-201ENST00000309546 ZC3H11AO75152 810 aaKnown RBP eCLIP21.75■■□□□ 1.07
LIME1-201ENST00000309546 CA8P35219 290 aa21.75■■□□□ 1.07
LIME1-201ENST00000309546 BCAR1P56945 870 aa21.75■■□□□ 1.07
LIME1-201ENST00000309546 GNL2Q13823 731 aaKnown RBP21.75■■□□□ 1.07
LIME1-201ENST00000309546 TMEM31Q5JXX7 168 aa21.75■■□□□ 1.07
LIME1-201ENST00000309546 TMC7Q7Z402 723 aa21.75■■□□□ 1.07
LIME1-201ENST00000309546 SLC39A11Q8N1S5 342 aa21.75■■□□□ 1.07
LIME1-201ENST00000309546 FAM184AQ8NB25 1140 aa21.75■■□□□ 1.07
LIME1-201ENST00000309546 XPNPEP1Q9NQW7 623 aa21.75■■□□□ 1.07
LIME1-201ENST00000309546 PCDHB2Q9Y5E7 798 aa21.75■■□□□ 1.07
LIME1-201ENST00000309546 A0A087WWV3 80 aa21.74■■□□□ 1.07
LIME1-201ENST00000309546 PI4K2BG5E9Z4 385 aa21.74■■□□□ 1.07
LIME1-201ENST00000309546 ASAP2O43150 1006 aa21.74■■□□□ 1.07
LIME1-201ENST00000309546 ERLIN2O94905 339 aa21.74■■□□□ 1.07
LIME1-201ENST00000309546 LYPLA2O95372 231 aa21.74■■□□□ 1.07
LIME1-201ENST00000309546 ALDH7A1P49419 539 aaKnown RBP21.74■■□□□ 1.07
LIME1-201ENST00000309546 HMGN5P82970 282 aaKnown RBP21.74■■□□□ 1.07
LIME1-201ENST00000309546 RNASELQ05823 741 aaKnown RBP21.74■■□□□ 1.07
LIME1-201ENST00000309546 VN1R2Q8NFZ6 395 aa21.74■■□□□ 1.07
LIME1-201ENST00000309546 PIGOQ8TEQ8 1089 aa21.74■■□□□ 1.07
LIME1-201ENST00000309546 PGBD4Q96DM1 585 aa21.74■■□□□ 1.07
LIME1-201ENST00000309546 POP1Q99575 1024 aaKnown RBP21.74■■□□□ 1.07
LIME1-201ENST00000309546 CDCA3Q99618 268 aaPredicted RBP21.74■■□□□ 1.07
LIME1-201ENST00000309546 KIF2CQ99661 725 aa21.74■■□□□ 1.07
LIME1-201ENST00000309546 GBP3Q9H0R5 595 aa21.74■■□□□ 1.07
LIME1-201ENST00000309546 SH2B1Q9NRF2 756 aaPredicted RBP21.74■■□□□ 1.07
LIME1-201ENST00000309546 ANKEF1Q9NU02 776 aa21.74■■□□□ 1.07
LIME1-201ENST00000309546 FSD2A1L4K1 749 aa21.73■■□□□ 1.07
LIME1-201ENST00000309546 HIDE1A8MVS5 230 aa21.73■■□□□ 1.07
LIME1-201ENST00000309546 DGAT1O75907 488 aa21.73■■□□□ 1.07
LIME1-201ENST00000309546 SRGAP2BP0DMP2 458 aa21.73■■□□□ 1.07
LIME1-201ENST00000309546 COASYQ13057 564 aa21.73■■□□□ 1.07
LIME1-201ENST00000309546 TFDP1Q14186 410 aa21.73■■□□□ 1.07
LIME1-201ENST00000309546 MXD4Q14582 209 aaPredicted RBP21.73■■□□□ 1.07
LIME1-201ENST00000309546 NOMO2Q5JPE7 1267 aa21.73■■□□□ 1.07
LIME1-201ENST00000309546 LLGL2Q6P1M3 1020 aa21.73■■□□□ 1.07
LIME1-201ENST00000309546 SMRP1Q8NCR6 262 aa21.73■■□□□ 1.07
LIME1-201ENST00000309546 TMEM169Q96HH4 297 aa21.73■■□□□ 1.07
LIME1-201ENST00000309546 LRFN3Q9BTN0 628 aa21.73■■□□□ 1.07
LIME1-201ENST00000309546 NGRNQ9NPE2 291 aaKnown RBP21.73■■□□□ 1.07
LIME1-201ENST00000309546 TBC1D13Q9NVG8 400 aa21.73■■□□□ 1.07
LIME1-201ENST00000309546 INO80B-WBP1J3KQ70 363 aa21.72■■□□□ 1.07
LIME1-201ENST00000309546 USO1O60763 962 aaKnown RBP21.72■■□□□ 1.07
LIME1-201ENST00000309546 ZNF623O75123 536 aa21.72■■□□□ 1.07
LIME1-201ENST00000309546 OFD1O75665 1012 aa21.72■■□□□ 1.07
LIME1-201ENST00000309546 EYA4O95677 639 aa21.72■■□□□ 1.07
LIME1-201ENST00000309546 RARRES1P49788 294 aa21.72■■□□□ 1.07
LIME1-201ENST00000309546 ZNF174Q15697 407 aa21.72■■□□□ 1.07
LIME1-201ENST00000309546 URGCPQ8TCY9 931 aa21.72■■□□□ 1.07
LIME1-201ENST00000309546 ASAP3Q8TDY4 903 aa21.72■■□□□ 1.07
LIME1-201ENST00000309546 RSPH1Q8WYR4 309 aa21.72■■□□□ 1.07
LIME1-201ENST00000309546 FOXP1Q9H334 677 aaPredicted RBP21.72■■□□□ 1.07
LIME1-201ENST00000309546 NRDE2Q9H7Z3 1164 aa21.72■■□□□ 1.07
LIME1-201ENST00000309546 USP15Q9Y4E8 981 aaPredicted RBP21.72■■□□□ 1.07
LIME1-201ENST00000309546 C19orf67A6NJJ6 358 aa21.71■■□□□ 1.07
LIME1-201ENST00000309546 OR52Z1P0C646 297 aa21.71■■□□□ 1.07
LIME1-201ENST00000309546 ALADP13716 330 aa21.71■■□□□ 1.07
LIME1-201ENST00000309546 HOXA11P31270 313 aaPredicted RBP21.71■■□□□ 1.07
LIME1-201ENST00000309546 TECP42680 631 aa21.71■■□□□ 1.07
LIME1-201ENST00000309546 CAPSQ13938 189 aa21.71■■□□□ 1.07
LIME1-201ENST00000309546 SMC1AQ14683 1233 aaKnown RBP21.71■■□□□ 1.07
LIME1-201ENST00000309546 UBXN11Q5T124 520 aa21.71■■□□□ 1.07
LIME1-201ENST00000309546 TMEM173Q86WV6 379 aaPredicted RBP21.71■■□□□ 1.07
LIME1-201ENST00000309546 FBXO18Q8NFZ0 1043 aa21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms