RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 STXBP5LQ9Y2K9 1186 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 UTP11Q9Y3A2 253 aaKnown RBP10.89□□□□□ -0.67
LIG3-201ENST00000262327 BZW2Q9Y6E2 419 aaKnown RBP10.89□□□□□ -0.67
LIG3-201ENST00000262327 GMNCA6NCL1 334 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 ATMINO43313 823 aaPredicted RBP10.88□□□□□ -0.67
LIG3-201ENST00000262327 ENTPD3O75355 529 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 ARHGAP27Q6ZUM4 889 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 CCDC13Q8IYE1 715 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 ALG3Q92685 438 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 HOOK2Q96ED9 719 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 SELENOSQ9BQE4 189 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 JPH2Q9BR39 696 aaPredicted RBP10.88□□□□□ -0.67
LIG3-201ENST00000262327 PLCD4Q9BRC7 762 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 AMNQ9BXJ7 453 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 COG5Q9UP83 839 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 ADAMTSL1Q8N6G6 1762 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 GOLGA6L7A0A1B0GV03 622 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 F8VZ95 297 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 RPL13P26373 211 aaKnown RBP10.88□□□□□ -0.67
LIG3-201ENST00000262327 PRKCIP41743 596 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 ACTN3Q08043 901 aaPredicted RBP10.88□□□□□ -0.67
LIG3-201ENST00000262327 FOXR2Q6PJQ5 311 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 CCDC26Q8TAB7 109 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 CTNNBL1Q8WYA6 563 aaPredicted RBP10.88□□□□□ -0.67
LIG3-201ENST00000262327 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.88□□□□□ -0.67
LIG3-201ENST00000262327 SPDYE2BA6NHP3 402 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 OPLAHO14841 1288 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 NDUFB10O96000 172 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 SPDYE6P0CI01 402 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 SOX5P35711 763 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 PPP2R2AP63151 447 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 DLGAP5Q15398 846 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 ZYXQ15942 572 aaKnown RBP10.88□□□□□ -0.67
LIG3-201ENST00000262327 C10orf76Q5T2E6 689 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 CCDC174Q6PII3 467 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 CCDC121Q6ZUS5 278 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 SH3BP5LQ7L8J4 393 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 PRPF38AQ8NAV1 312 aaKnown RBP10.88□□□□□ -0.67
LIG3-201ENST00000262327 ZSWIM2Q8NEG5 633 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 OLIG1Q8TAK6 271 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 KRT35Q92764 455 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 C18orf8Q96DM3 657 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 CABS1Q96KC9 395 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 BTBD6Q96KE9 485 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 CCDC114Q96M63 670 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 FMO2Q99518 471 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 SUCLA2Q9P2R7 463 aaPredicted RBP10.88□□□□□ -0.67
LIG3-201ENST00000262327 WRAP73Q9P2S5 460 aaPredicted RBP10.88□□□□□ -0.67
LIG3-201ENST00000262327 VAV3Q9UKW4 847 aa10.88□□□□□ -0.67
LIG3-201ENST00000262327 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.88□□□□□ -0.67
LIG3-201ENST00000262327 ZMYM2Q9UBW7 1377 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 CYP3A7-CYP3A51PA0A087WV96 503 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 FZD9O00144 591 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 FOXN3O00409 490 aaPredicted RBP10.87□□□□□ -0.67
LIG3-201ENST00000262327 DNM1LO00429 736 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 TNFAIP3P21580 790 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 CYP3A7P24462 503 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 FMO5P49326 533 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 DLG4P78352 724 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 MICALCLQ6ZW33 695 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 CPLX4Q7Z7G2 160 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 SLFN11Q7Z7L1 901 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 ATP8B4Q8TF62 1192 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 LMBR1Q8WVP7 490 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 HES6Q96HZ4 224 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 OSBPL7Q9BZF2 842 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 FHDC1Q9C0D6 1143 aaPredicted RBP10.87□□□□□ -0.67
LIG3-201ENST00000262327 CCDC113Q9H0I3 377 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 TMOD2Q9NZR1 351 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 PTPN22Q9Y2R2 807 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 BTNL10A8MVZ5 291 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 DDX3YO15523 660 aaKnown RBP10.87□□□□□ -0.67
LIG3-201ENST00000262327 FERP16591 822 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 PSMC2P35998 433 aaKnown RBP10.87□□□□□ -0.67
LIG3-201ENST00000262327 DR1Q01658 176 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 CCDC38Q502W7 563 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 FKBP1CQ5VVH2 108 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 ILDR2Q71H61 639 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 FBXO25Q8TCJ0 367 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 KAT5Q92993 513 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 SEC16BQ96JE7 1060 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 PRMT6Q96LA8 375 aaPredicted RBP10.87□□□□□ -0.67
LIG3-201ENST00000262327 WDR18Q9BV38 432 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 METTL14Q9HCE5 456 aaKnown RBP10.87□□□□□ -0.67
LIG3-201ENST00000262327 FAM198AQ9UFP1 575 aa10.87□□□□□ -0.67
LIG3-201ENST00000262327 CCDC188H7C350 402 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 TRAPPC3O43617 180 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 SLITRK3O94933 977 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 GH2P01242 217 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 ODR4Q5SWX8 454 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 PHLDB3Q6NSJ2 640 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 LRIG3Q6UXM1 1119 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 RUFY4Q6ZNE9 571 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 SYCP3Q8IZU3 236 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 RASGEF1CQ8N431 466 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 ARFGAP2Q8N6H7 521 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 CRYGNQ8WXF5 182 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 ZBED3Q96IU2 234 aaPredicted RBP10.86□□□□□ -0.67
LIG3-201ENST00000262327 GPR88Q9GZN0 384 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 INTS2Q9H0H0 1204 aaKnown RBP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms