RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ADCY2Q08462 1091 aa6.22□□□□□ -1.41
CD44-239ENST00000639002 ADCY1Q08828 1119 aa6.22□□□□□ -1.41
CD44-239ENST00000639002 USP51Q70EK9 711 aa6.22□□□□□ -1.41
CD44-239ENST00000639002 GAREM2Q75VX8 874 aa6.22□□□□□ -1.41
CD44-239ENST00000639002 KIF18BQ86Y91 864 aa6.22□□□□□ -1.41
CD44-239ENST00000639002 SYNPOQ8N3V7 929 aa6.22□□□□□ -1.41
CD44-239ENST00000639002 GCDHQ92947 438 aaPredicted RBP6.22□□□□□ -1.41
CD44-239ENST00000639002 WDR92Q96MX6 357 aa6.22□□□□□ -1.41
CD44-239ENST00000639002 CSRNP2Q9H175 543 aa6.22□□□□□ -1.41
CD44-239ENST00000639002 POFUT1Q9H488 388 aa6.22□□□□□ -1.41
CD44-239ENST00000639002 TOMM22Q9NS69 142 aa6.22□□□□□ -1.41
CD44-239ENST00000639002 POLR3BQ9NW08 1133 aaPredicted RBP6.22□□□□□ -1.41
CD44-239ENST00000639002 UBE2QL1A1L167 161 aa6.21□□□□□ -1.42
CD44-239ENST00000639002 KPNA6O60684 536 aa6.21□□□□□ -1.42
CD44-239ENST00000639002 SCNN1GP51170 649 aa6.21□□□□□ -1.42
CD44-239ENST00000639002 BCAR1P56945 870 aa6.21□□□□□ -1.42
CD44-239ENST00000639002 SMAD3P84022 425 aaKnown RBP6.21□□□□□ -1.42
CD44-239ENST00000639002 RRP1BQ14684 758 aaKnown RBP6.21□□□□□ -1.42
CD44-239ENST00000639002 PCBP1Q15365 356 aaKnown RBP eCLIP6.21□□□□□ -1.42
CD44-239ENST00000639002 TCEA2Q15560 299 aa6.21□□□□□ -1.42
CD44-239ENST00000639002 Q6ZRM9 215 aa6.21□□□□□ -1.42
CD44-239ENST00000639002 LRRTM3Q86VH5 581 aa6.21□□□□□ -1.42
CD44-239ENST00000639002 TMPRSS6Q8IU80 811 aa6.21□□□□□ -1.42
CD44-239ENST00000639002 PHYKPLQ8IUZ5 450 aa6.21□□□□□ -1.42
CD44-239ENST00000639002 CHTF18Q8WVB6 975 aa6.21□□□□□ -1.42
CD44-239ENST00000639002 KRTAP17-1Q9BYP8 105 aa6.21□□□□□ -1.42
CD44-239ENST00000639002 GIT1Q9Y2X7 761 aa6.21□□□□□ -1.42
CD44-239ENST00000639002 TOX4O94842 621 aa6.2□□□□□ -1.42
CD44-239ENST00000639002 ZNF202O95125 648 aa6.2□□□□□ -1.42
CD44-239ENST00000639002 HHEXQ03014 270 aa6.2□□□□□ -1.42
CD44-239ENST00000639002 GAGE13Q4V321 117 aa6.2□□□□□ -1.42
CD44-239ENST00000639002 KIAA1841Q6NSI8 718 aa6.2□□□□□ -1.42
CD44-239ENST00000639002 FAM111BQ6SJ93 734 aa6.2□□□□□ -1.42
CD44-239ENST00000639002 HOMER1Q86YM7 354 aa6.2□□□□□ -1.42
CD44-239ENST00000639002 THEMISQ8N1K5 641 aaPredicted RBP6.2□□□□□ -1.42
CD44-239ENST00000639002 NINJ1Q92982 152 aa6.2□□□□□ -1.42
CD44-239ENST00000639002 MTG2Q9H4K7 406 aa6.2□□□□□ -1.42
CD44-239ENST00000639002 FANCLQ9NW38 375 aa6.2□□□□□ -1.42
CD44-239ENST00000639002 SUV39H1O43463 412 aa6.19□□□□□ -1.42
CD44-239ENST00000639002 OPHN1O60890 802 aa6.19□□□□□ -1.42
CD44-239ENST00000639002 VSIG10L2P0DP72 767 aa6.19□□□□□ -1.42
CD44-239ENST00000639002 NEK4P51957 841 aa6.19□□□□□ -1.42
CD44-239ENST00000639002 SLC25A3Q00325 362 aa6.19□□□□□ -1.42
CD44-239ENST00000639002 FHL2Q14192 279 aa6.19□□□□□ -1.42
CD44-239ENST00000639002 CNNM4Q6P4Q7 775 aa6.19□□□□□ -1.42
CD44-239ENST00000639002 C16orf86Q6ZW13 317 aa6.19□□□□□ -1.42
CD44-239ENST00000639002 PPP1R14CQ8TAE6 165 aa6.19□□□□□ -1.42
CD44-239ENST00000639002 RPGRQ92834 1020 aaKnown RBP6.19□□□□□ -1.42
CD44-239ENST00000639002 ZNF496Q96IT1 587 aaPredicted RBP6.19□□□□□ -1.42
CD44-239ENST00000639002 IL23AQ9NPF7 189 aa6.19□□□□□ -1.42
CD44-239ENST00000639002 IFT57Q9NWB7 429 aa6.19□□□□□ -1.42
CD44-239ENST00000639002 AURKAIP1Q9NWT8 199 aaPredicted RBP6.19□□□□□ -1.42
CD44-239ENST00000639002 THG1LQ9NWX6 298 aaKnown RBP6.19□□□□□ -1.42
CD44-239ENST00000639002 ZKSCAN5Q9Y2L8 839 aa6.19□□□□□ -1.42
CD44-239ENST00000639002 LCHNA4D1U4 455 aa6.18□□□□□ -1.42
CD44-239ENST00000639002 GOLGA8BA8MQT2 603 aa6.18□□□□□ -1.42
CD44-239ENST00000639002 APOL3O95236 402 aa6.18□□□□□ -1.42
CD44-239ENST00000639002 KIR2DL3P43628 341 aa6.18□□□□□ -1.42
CD44-239ENST00000639002 TUBA3CQ13748 450 aa6.18□□□□□ -1.42
CD44-239ENST00000639002 LRRC32Q14392 662 aa6.18□□□□□ -1.42
CD44-239ENST00000639002 SEPT7Q16181 437 aaKnown RBP6.18□□□□□ -1.42
CD44-239ENST00000639002 TIGD7Q6NT04 549 aaPredicted RBP6.18□□□□□ -1.42
CD44-239ENST00000639002 TUBA3EQ6PEY2 450 aa6.18□□□□□ -1.42
CD44-239ENST00000639002 DHX37Q8IY37 1157 aaKnown RBP6.18□□□□□ -1.42
CD44-239ENST00000639002 EFHBQ8N7U6 833 aa6.18□□□□□ -1.42
CD44-239ENST00000639002 C7orf31Q8N865 590 aa6.18□□□□□ -1.42
CD44-239ENST00000639002 OSBPL6Q9BZF3 934 aa6.18□□□□□ -1.42
CD44-239ENST00000639002 RABGGTBP53611 331 aa6.17□□□□□ -1.42
CD44-239ENST00000639002 ABHD18Q0P651 414 aa6.17□□□□□ -1.42
CD44-239ENST00000639002 ZBTB41Q5SVQ8 909 aa6.17□□□□□ -1.42
CD44-239ENST00000639002 C1QL3Q5VWW1 255 aa6.17□□□□□ -1.42
CD44-239ENST00000639002 JAZF1Q86VZ6 243 aa6.17□□□□□ -1.42
CD44-239ENST00000639002 ZZZ3Q8IYH5 903 aa6.17□□□□□ -1.42
CD44-239ENST00000639002 ANKRD35Q8N283 1001 aa6.17□□□□□ -1.42
CD44-239ENST00000639002 SMC1BQ8NDV3 1235 aa6.17□□□□□ -1.42
CD44-239ENST00000639002 APPBP2Q92624 585 aa6.17□□□□□ -1.42
CD44-239ENST00000639002 MIEF2Q96C03 454 aa6.17□□□□□ -1.42
CD44-239ENST00000639002 TCF25Q9BQ70 676 aa6.17□□□□□ -1.42
CD44-239ENST00000639002 MENTQ9BUN1 341 aa6.17□□□□□ -1.42
CD44-239ENST00000639002 TARS2Q9BW92 718 aaKnown RBP6.17□□□□□ -1.42
CD44-239ENST00000639002 MS4A5Q9H3V2 200 aa6.17□□□□□ -1.42
CD44-239ENST00000639002 MMRN2Q9H8L6 949 aa6.17□□□□□ -1.42
CD44-239ENST00000639002 XDHP47989 1333 aa6.17□□□□□ -1.42
CD44-239ENST00000639002 MYPNQ86TC9 1320 aa6.17□□□□□ -1.42
CD44-239ENST00000639002 CYP27B1O15528 508 aa6.16□□□□□ -1.42
CD44-239ENST00000639002 DAPK3O43293 454 aa6.16□□□□□ -1.42
CD44-239ENST00000639002 GAS7O60861 476 aa6.16□□□□□ -1.42
CD44-239ENST00000639002 STC2O76061 302 aa6.16□□□□□ -1.42
CD44-239ENST00000639002 JUNP05412 331 aaKnown RBP6.16□□□□□ -1.42
CD44-239ENST00000639002 GAAP10253 952 aa6.16□□□□□ -1.42
CD44-239ENST00000639002 ELAVL1Q15717 326 aaKnown RBP6.16□□□□□ -1.42
CD44-239ENST00000639002 DALRD3Q5D0E6 543 aaKnown RBP6.16□□□□□ -1.42
CD44-239ENST00000639002 NIM1KQ8IY84 436 aa6.16□□□□□ -1.42
CD44-239ENST00000639002 ELOA2Q8IYF1 753 aaPredicted RBP6.16□□□□□ -1.42
CD44-239ENST00000639002 CMTM4Q8IZR5 234 aa6.16□□□□□ -1.42
CD44-239ENST00000639002 AMER2Q8N7J2 671 aa6.16□□□□□ -1.42
CD44-239ENST00000639002 PIK3C3Q8NEB9 887 aa6.16□□□□□ -1.42
CD44-239ENST00000639002 LARP4BQ92615 738 aaKnown RBP6.16□□□□□ -1.42
CD44-239ENST00000639002 NOL10Q9BSC4 688 aaKnown RBP6.16□□□□□ -1.42
CD44-239ENST00000639002 ENKD1Q9H0I2 346 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 124.4 ms