RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 IGKV6-21A0A0C4DH24 114 aa11.6□□□□□ -0.55
CLN3-248ENST00000636355 CCP110O43303 1012 aa11.6□□□□□ -0.55
CLN3-248ENST00000636355 STX10O60499 249 aa11.6□□□□□ -0.55
CLN3-248ENST00000636355 MFAP3LO75121 409 aa11.6□□□□□ -0.55
CLN3-248ENST00000636355 PIGRP01833 764 aa11.6□□□□□ -0.55
CLN3-248ENST00000636355 LGALS2P05162 132 aa11.6□□□□□ -0.55
CLN3-248ENST00000636355 PSMC2P35998 433 aaKnown RBP11.6□□□□□ -0.55
CLN3-248ENST00000636355 EFNA5P52803 228 aa11.6□□□□□ -0.55
CLN3-248ENST00000636355 PEX3P56589 373 aa11.6□□□□□ -0.55
CLN3-248ENST00000636355 MCCD1P59942 119 aaPredicted RBP11.6□□□□□ -0.55
CLN3-248ENST00000636355 CCZ1BP86790 482 aa11.6□□□□□ -0.55
CLN3-248ENST00000636355 CCZ1P86791 482 aaPredicted RBP11.6□□□□□ -0.55
CLN3-248ENST00000636355 TBC1D8BQ0IIM8 1120 aa11.6□□□□□ -0.55
CLN3-248ENST00000636355 ARMCX5Q6P1M9 558 aa11.6□□□□□ -0.55
CLN3-248ENST00000636355 USP37Q86T82 979 aa11.6□□□□□ -0.55
CLN3-248ENST00000636355 NPLOC4Q8TAT6 608 aa11.6□□□□□ -0.55
CLN3-248ENST00000636355 KIAA1524Q8TCG1 905 aa11.6□□□□□ -0.55
CLN3-248ENST00000636355 CACTINQ8WUQ7 758 aaKnown RBP11.6□□□□□ -0.55
CLN3-248ENST00000636355 POLR3FQ9H1D9 316 aaPredicted RBP11.6□□□□□ -0.55
CLN3-248ENST00000636355 VPS16Q9H269 839 aa11.6□□□□□ -0.55
CLN3-248ENST00000636355 TMX1Q9H3N1 280 aa11.6□□□□□ -0.55
CLN3-248ENST00000636355 BCAS3Q9H6U6 928 aa11.6□□□□□ -0.55
CLN3-248ENST00000636355 KMT5AQ9NQR1 393 aa11.6□□□□□ -0.55
CLN3-248ENST00000636355 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.6□□□□□ -0.55
CLN3-248ENST00000636355 FRMD4BQ9Y2L6 1034 aa11.6□□□□□ -0.55
CLN3-248ENST00000636355 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.6□□□□□ -0.55
CLN3-248ENST00000636355 TMEM150BA6NC51 233 aa11.59□□□□□ -0.55
CLN3-248ENST00000636355 SFI1A8K8P3 1242 aa11.59□□□□□ -0.55
CLN3-248ENST00000636355 AKR1B15C9JRZ8 316 aaPredicted RBP11.59□□□□□ -0.55
CLN3-248ENST00000636355 MAGEB2O15479 319 aa11.59□□□□□ -0.55
CLN3-248ENST00000636355 ARHGAP6O43182 974 aa11.59□□□□□ -0.55
CLN3-248ENST00000636355 TEX33O43247 280 aa11.59□□□□□ -0.55
CLN3-248ENST00000636355 GYPCP04921 128 aa11.59□□□□□ -0.55
CLN3-248ENST00000636355 MMP3P08254 477 aa11.59□□□□□ -0.55
CLN3-248ENST00000636355 ARL2P36404 184 aa11.59□□□□□ -0.55
CLN3-248ENST00000636355 LACTBP83111 547 aaPredicted RBP11.59□□□□□ -0.55
CLN3-248ENST00000636355 POU5F1BQ06416 359 aa11.59□□□□□ -0.55
CLN3-248ENST00000636355 PLCB4Q15147 1175 aa11.59□□□□□ -0.55
CLN3-248ENST00000636355 DGKDQ16760 1214 aa11.59□□□□□ -0.55
CLN3-248ENST00000636355 ZNF484Q5JVG2 852 aa11.59□□□□□ -0.55
CLN3-248ENST00000636355 IER5Q5VY09 327 aa11.59□□□□□ -0.55
CLN3-248ENST00000636355 CDCA2Q69YH5 1023 aaPredicted RBP11.59□□□□□ -0.55
CLN3-248ENST00000636355 SYCP3Q8IZU3 236 aa11.59□□□□□ -0.55
CLN3-248ENST00000636355 TC2NQ8N9U0 490 aa11.59□□□□□ -0.55
CLN3-248ENST00000636355 PSPC1Q8WXF1 523 aaKnown RBP11.59□□□□□ -0.55
CLN3-248ENST00000636355 NFKBIZQ9BYH8 718 aa11.59□□□□□ -0.55
CLN3-248ENST00000636355 TTYH3Q9C0H2 523 aa11.59□□□□□ -0.55
CLN3-248ENST00000636355 NUCKS1Q9H1E3 243 aaKnown RBP11.59□□□□□ -0.55
CLN3-248ENST00000636355 C2orf40Q9H1Z8 148 aa11.59□□□□□ -0.55
CLN3-248ENST00000636355 GPRC5CQ9NQ84 441 aa11.59□□□□□ -0.55
CLN3-248ENST00000636355 PDGFCQ9NRA1 345 aa11.59□□□□□ -0.55
CLN3-248ENST00000636355 ZHX1Q9UKY1 873 aaPredicted RBP11.59□□□□□ -0.55
CLN3-248ENST00000636355 TBX20Q9UMR3 447 aa11.59□□□□□ -0.55
CLN3-248ENST00000636355 DENND3A2RUS2 1198 aa11.58□□□□□ -0.56
CLN3-248ENST00000636355 A6NJR5 290 aa11.58□□□□□ -0.56
CLN3-248ENST00000636355 ZBTB42B2RXF5 422 aa11.58□□□□□ -0.56
CLN3-248ENST00000636355 PES1O00541 588 aaKnown RBP11.58□□□□□ -0.56
CLN3-248ENST00000636355 SLC16A4O15374 487 aa11.58□□□□□ -0.56
CLN3-248ENST00000636355 ASAP2O43150 1006 aa11.58□□□□□ -0.56
CLN3-248ENST00000636355 N4BP1O75113 896 aaKnown RBP11.58□□□□□ -0.56
CLN3-248ENST00000636355 GNRH1P01148 92 aa11.58□□□□□ -0.56
CLN3-248ENST00000636355 SKILP12757 684 aa11.58□□□□□ -0.56
CLN3-248ENST00000636355 TRIM21P19474 475 aaKnown RBP11.58□□□□□ -0.56
CLN3-248ENST00000636355 GARTP22102 1010 aa11.58□□□□□ -0.56
CLN3-248ENST00000636355 RFX1P22670 979 aa11.58□□□□□ -0.56
CLN3-248ENST00000636355 CLCN1P35523 988 aa11.58□□□□□ -0.56
CLN3-248ENST00000636355 ADCYAP1R1P41586 468 aa11.58□□□□□ -0.56
CLN3-248ENST00000636355 TNFAIP2Q03169 654 aa11.58□□□□□ -0.56
CLN3-248ENST00000636355 TFDP1Q14186 410 aa11.58□□□□□ -0.56
CLN3-248ENST00000636355 ZC2HC1CQ53FD0 456 aaPredicted RBP11.58□□□□□ -0.56
CLN3-248ENST00000636355 INTS8Q75QN2 995 aaKnown RBP11.58□□□□□ -0.56
CLN3-248ENST00000636355 FMNL3Q8IVF7 1028 aa11.58□□□□□ -0.56
CLN3-248ENST00000636355 FAM186BQ8IYM0 893 aa11.58□□□□□ -0.56
CLN3-248ENST00000636355 ZNF710Q8N1W2 664 aa11.58□□□□□ -0.56
CLN3-248ENST00000636355 CAPNS2Q96L46 248 aa11.58□□□□□ -0.56
CLN3-248ENST00000636355 DNAJC7Q99615 494 aa11.58□□□□□ -0.56
CLN3-248ENST00000636355 TMEM134Q9H6X4 195 aa11.58□□□□□ -0.56
CLN3-248ENST00000636355 KIAA1586Q9HCI6 787 aa11.58□□□□□ -0.56
CLN3-248ENST00000636355 SPTLC3Q9NUV7 552 aa11.58□□□□□ -0.56
CLN3-248ENST00000636355 GJD2Q9UKL4 321 aa11.58□□□□□ -0.56
CLN3-248ENST00000636355 CAPN11Q9UMQ6 739 aa11.58□□□□□ -0.56
CLN3-248ENST00000636355 TRPC6Q9Y210 931 aa11.58□□□□□ -0.56
CLN3-248ENST00000636355 GNEQ9Y223 722 aaKnown RBP11.58□□□□□ -0.56
CLN3-248ENST00000636355 SIK3Q9Y2K2 1263 aa11.58□□□□□ -0.56
CLN3-248ENST00000636355 TELO2Q9Y4R8 837 aa11.58□□□□□ -0.56
CLN3-248ENST00000636355 EVPLQ92817 2033 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 CCDC169A6NNP5 214 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 HNRNPDLO14979 420 aaKnown RBP11.57□□□□□ -0.56
CLN3-248ENST00000636355 PMM2O15305 246 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 P4HA2O15460 535 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 AKAP3O75969 853 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 F2P00734 622 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 AFPP02771 609 aaKnown RBP11.57□□□□□ -0.56
CLN3-248ENST00000636355 ZNF865P0CJ78 1059 aaPredicted RBP11.57□□□□□ -0.56
CLN3-248ENST00000636355 SMPD1P17405 629 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 MAP2K2P36507 400 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 CPT1AP50416 773 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 KCNA1Q09470 495 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 STRN3Q13033 797 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 KIF22Q14807 665 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms