RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 CBX2Q14781 532 aaPredicted RBP18.16■□□□□ 0.5
CLN3-246ENST00000636228 PLA2G4FQ68DD2 849 aa18.16■□□□□ 0.5
CLN3-246ENST00000636228 ANKRD54Q6NXT1 300 aa18.16■□□□□ 0.5
CLN3-246ENST00000636228 SYCE2Q6PIF2 218 aa18.16■□□□□ 0.5
CLN3-246ENST00000636228 TRIM67Q6ZTA4 783 aa18.16■□□□□ 0.5
CLN3-246ENST00000636228 RHPN2Q8IUC4 686 aa18.16■□□□□ 0.5
CLN3-246ENST00000636228 SLC39A11Q8N1S5 342 aa18.16■□□□□ 0.5
CLN3-246ENST00000636228 SUSD6Q92537 303 aa18.16■□□□□ 0.5
CLN3-246ENST00000636228 ZNF274Q96GC6 653 aaPredicted RBP18.16■□□□□ 0.5
CLN3-246ENST00000636228 MFSD14AQ96MC6 490 aa18.16■□□□□ 0.5
CLN3-246ENST00000636228 MBOAT7Q96N66 472 aa18.16■□□□□ 0.5
CLN3-246ENST00000636228 C22orf23Q9BZE7 217 aa18.16■□□□□ 0.5
CLN3-246ENST00000636228 NGRNQ9NPE2 291 aaKnown RBP18.16■□□□□ 0.5
CLN3-246ENST00000636228 SUCLA2Q9P2R7 463 aaPredicted RBP18.16■□□□□ 0.5
CLN3-246ENST00000636228 DDX25Q9UHL0 483 aaKnown RBP18.16■□□□□ 0.5
CLN3-246ENST00000636228 FNDC1Q4ZHG4 1894 aaPredicted RBP18.16■□□□□ 0.5
CLN3-246ENST00000636228 IGKV6-21A0A0C4DH24 114 aa18.15■□□□□ 0.5
CLN3-246ENST00000636228 TMEM221A6NGB7 291 aa18.15■□□□□ 0.5
CLN3-246ENST00000636228 M0R296 226 aa18.15■□□□□ 0.5
CLN3-246ENST00000636228 EOMESO95936 686 aa18.15■□□□□ 0.5
CLN3-246ENST00000636228 BCAR1P56945 870 aa18.15■□□□□ 0.5
CLN3-246ENST00000636228 ZXDAP98168 799 aa18.15■□□□□ 0.5
CLN3-246ENST00000636228 NONOQ15233 471 aaKnown RBP eCLIP18.15■□□□□ 0.5
CLN3-246ENST00000636228 LETM2Q2VYF4 491 aa18.15■□□□□ 0.5
CLN3-246ENST00000636228 TMEM184AQ6ZMB5 413 aa18.15■□□□□ 0.5
CLN3-246ENST00000636228 ANO5Q75V66 913 aa18.15■□□□□ 0.5
CLN3-246ENST00000636228 ZNF710Q8N1W2 664 aa18.15■□□□□ 0.5
CLN3-246ENST00000636228 ZNF579Q8NAF0 562 aaKnown RBP18.15■□□□□ 0.5
CLN3-246ENST00000636228 DAGLBQ8NCG7 672 aa18.15■□□□□ 0.5
CLN3-246ENST00000636228 RDM1Q8NG50 284 aa18.15■□□□□ 0.5
CLN3-246ENST00000636228 PBXIP1Q96AQ6 731 aa18.15■□□□□ 0.5
CLN3-246ENST00000636228 GJB4Q9NTQ9 266 aa18.15■□□□□ 0.5
CLN3-246ENST00000636228 PDRG1Q9NUG6 133 aa18.15■□□□□ 0.5
CLN3-246ENST00000636228 MEIS3P2A8K0S8 358 aa18.14■□□□□ 0.49
CLN3-246ENST00000636228 PPM1AP35813 382 aa18.14■□□□□ 0.49
CLN3-246ENST00000636228 PHKA2P46019 1235 aa18.14■□□□□ 0.49
CLN3-246ENST00000636228 DNM2P50570 870 aa18.14■□□□□ 0.49
CLN3-246ENST00000636228 NPEPPSP55786 919 aa18.14■□□□□ 0.49
CLN3-246ENST00000636228 NHLH1Q02575 133 aa18.14■□□□□ 0.49
CLN3-246ENST00000636228 MRPL43Q8N983 215 aaKnown RBP18.14■□□□□ 0.49
CLN3-246ENST00000636228 AUTS2Q8WXX7 1259 aa18.14■□□□□ 0.49
CLN3-246ENST00000636228 NLRP4Q96MN2 994 aa18.14■□□□□ 0.49
CLN3-246ENST00000636228 SLKQ9H2G2 1235 aaPredicted RBP18.14■□□□□ 0.49
CLN3-246ENST00000636228 DACT1Q9NYF0 836 aa18.14■□□□□ 0.49
CLN3-246ENST00000636228 PIN4Q9Y237 131 aaKnown RBP18.14■□□□□ 0.49
CLN3-246ENST00000636228 C2orf71A6NGG8 1288 aa18.13■□□□□ 0.49
CLN3-246ENST00000636228 MAFO75444 373 aaPredicted RBP18.13■□□□□ 0.49
CLN3-246ENST00000636228 SRGAP2BP0DMP2 458 aa18.13■□□□□ 0.49
CLN3-246ENST00000636228 ALDH7A1P49419 539 aaKnown RBP18.13■□□□□ 0.49
CLN3-246ENST00000636228 SCRN1Q12765 414 aa18.13■□□□□ 0.49
CLN3-246ENST00000636228 IER5LQ5T953 404 aa18.13■□□□□ 0.49
CLN3-246ENST00000636228 TWF2Q6IBS0 349 aaKnown RBP18.13■□□□□ 0.49
CLN3-246ENST00000636228 KANK3Q6NY19 840 aa18.13■□□□□ 0.49
CLN3-246ENST00000636228 TMEM173Q86WV6 379 aaPredicted RBP18.13■□□□□ 0.49
CLN3-246ENST00000636228 TM6SF1Q9BZW5 370 aa18.13■□□□□ 0.49
CLN3-246ENST00000636228 CHST12Q9NRB3 414 aa18.13■□□□□ 0.49
CLN3-246ENST00000636228 BMP2KQ9NSY1 1161 aaPredicted RBP18.13■□□□□ 0.49
CLN3-246ENST00000636228 WRAP73Q9P2S5 460 aaPredicted RBP18.13■□□□□ 0.49
CLN3-246ENST00000636228 INPP5FQ9Y2H2 1132 aa18.13■□□□□ 0.49
CLN3-246ENST00000636228 HCFC2Q9Y5Z7 792 aa18.13■□□□□ 0.49
CLN3-246ENST00000636228 FSD2A1L4K1 749 aa18.12■□□□□ 0.49
CLN3-246ENST00000636228 CLASP2O75122 1294 aaKnown RBP18.12■□□□□ 0.49
CLN3-246ENST00000636228 ZC3H11AO75152 810 aaKnown RBP eCLIP18.12■□□□□ 0.49
CLN3-246ENST00000636228 CXCL14O95715 111 aa18.12■□□□□ 0.49
CLN3-246ENST00000636228 WEE2P0C1S8 567 aa18.12■□□□□ 0.49
CLN3-246ENST00000636228 SFPQP23246 707 aaKnown RBP eCLIP18.12■□□□□ 0.49
CLN3-246ENST00000636228 PSMC5P62195 406 aa18.12■□□□□ 0.49
CLN3-246ENST00000636228 SMC1AQ14683 1233 aaKnown RBP18.12■□□□□ 0.49
CLN3-246ENST00000636228 CPLX2Q6PUV4 134 aaKnown RBP18.12■□□□□ 0.49
CLN3-246ENST00000636228 MOXD1Q6UVY6 613 aa18.12■□□□□ 0.49
CLN3-246ENST00000636228 CATSPER4Q7RTX7 472 aa18.12■□□□□ 0.49
CLN3-246ENST00000636228 KRT25Q7Z3Z0 450 aa18.12■□□□□ 0.49
CLN3-246ENST00000636228 OXER1Q8TDS5 423 aa18.12■□□□□ 0.49
CLN3-246ENST00000636228 PHF20Q9BVI0 1012 aa18.12■□□□□ 0.49
CLN3-246ENST00000636228 GBP3Q9H0R5 595 aa18.12■□□□□ 0.49
CLN3-246ENST00000636228 VAV3Q9UKW4 847 aa18.12■□□□□ 0.49
CLN3-246ENST00000636228 MRE11P49959 708 aa18.11■□□□□ 0.49
CLN3-246ENST00000636228 CDC42EP1Q00587 391 aa18.11■□□□□ 0.49
CLN3-246ENST00000636228 GALNT17Q6IS24 598 aa18.11■□□□□ 0.49
CLN3-246ENST00000636228 C12orf76Q8N812 135 aaPredicted RBP18.11■□□□□ 0.49
CLN3-246ENST00000636228 BCL7CQ8WUZ0 217 aaPredicted RBP18.11■□□□□ 0.49
CLN3-246ENST00000636228 TMEM143Q96AN5 459 aa18.11■□□□□ 0.49
CLN3-246ENST00000636228 MRPL9Q9BYD2 267 aaKnown RBP18.11■□□□□ 0.49
CLN3-246ENST00000636228 NRDE2Q9H7Z3 1164 aa18.11■□□□□ 0.49
CLN3-246ENST00000636228 CYP26B1Q9NR63 512 aa18.11■□□□□ 0.49
CLN3-246ENST00000636228 TSHZ2Q9NRE2 1034 aa18.11■□□□□ 0.49
CLN3-246ENST00000636228 FAM105AQ9NUU6 356 aa18.11■□□□□ 0.49
CLN3-246ENST00000636228 CCDC194A0A1B0GVG4 234 aa18.1■□□□□ 0.49
CLN3-246ENST00000636228 CCNT1O60563 726 aaKnown RBP18.1■□□□□ 0.49
CLN3-246ENST00000636228 OFD1O75665 1012 aa18.1■□□□□ 0.49
CLN3-246ENST00000636228 QARSP47897 775 aaKnown RBP18.1■□□□□ 0.49
CLN3-246ENST00000636228 AFF1P51825 1210 aaKnown RBP18.1■□□□□ 0.49
CLN3-246ENST00000636228 EARS2Q5JPH6 523 aaKnown RBP18.1■□□□□ 0.49
CLN3-246ENST00000636228 PIK3AP1Q6ZUJ8 805 aa18.1■□□□□ 0.49
CLN3-246ENST00000636228 BMP8AQ7Z5Y6 402 aa18.1■□□□□ 0.49
CLN3-246ENST00000636228 ZNF410Q86VK4 478 aa18.1■□□□□ 0.49
CLN3-246ENST00000636228 VPS52Q8N1B4 723 aa18.1■□□□□ 0.49
CLN3-246ENST00000636228 PRSS33Q8NF86 280 aa18.1■□□□□ 0.49
CLN3-246ENST00000636228 FEZF2Q8TBJ5 459 aa18.1■□□□□ 0.49
CLN3-246ENST00000636228 CASP10Q92851 521 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms