RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 SEMA3FQ13275 785 aa17.12■□□□□ 0.33
CPSF1-213ENST00000620219 EHBP1Q8NDI1 1231 aa17.12■□□□□ 0.33
CPSF1-213ENST00000620219 SECISBP2LQ93073 1101 aaKnown RBP17.12■□□□□ 0.33
CPSF1-213ENST00000620219 RHOXF2Q9BQY4 288 aa17.12■□□□□ 0.33
CPSF1-213ENST00000620219 AP5M1Q9H0R1 490 aa17.12■□□□□ 0.33
CPSF1-213ENST00000620219 PPP2R3AQ06190 1150 aa17.12■□□□□ 0.33
CPSF1-213ENST00000620219 C12orf42Q96LP6 360 aa17.12■□□□□ 0.33
CPSF1-213ENST00000620219 OATP04181 439 aa17.11■□□□□ 0.33
CPSF1-213ENST00000620219 COPB2P35606 906 aa17.11■□□□□ 0.33
CPSF1-213ENST00000620219 SPIRE1Q08AE8 756 aa17.11■□□□□ 0.33
CPSF1-213ENST00000620219 KIAA0753Q2KHM9 967 aa17.11■□□□□ 0.33
CPSF1-213ENST00000620219 APTXQ7Z2E3 356 aaKnown RBP17.11■□□□□ 0.33
CPSF1-213ENST00000620219 REXO1L1PQ8IX06 675 aa17.11■□□□□ 0.33
CPSF1-213ENST00000620219 AGPAT3Q9NRZ7 376 aa17.11■□□□□ 0.33
CPSF1-213ENST00000620219 HSPBP1Q9NZL4 362 aa17.11■□□□□ 0.33
CPSF1-213ENST00000620219 EMSYQ7Z589 1322 aa17.11■□□□□ 0.33
CPSF1-213ENST00000620219 PNMA6AP0CW24 399 aaPredicted RBP17.11■□□□□ 0.33
CPSF1-213ENST00000620219 NPTX2P47972 431 aa17.11■□□□□ 0.33
CPSF1-213ENST00000620219 TFAMQ00059 246 aaKnown RBP17.11■□□□□ 0.33
CPSF1-213ENST00000620219 C4orf19Q8IY42 314 aa17.11■□□□□ 0.33
CPSF1-213ENST00000620219 H0YCG3 227 aa17.11■□□□□ 0.33
CPSF1-213ENST00000620219 NOL9Q5SY16 702 aaKnown RBP17.11■□□□□ 0.33
CPSF1-213ENST00000620219 GJB7Q6PEY0 223 aa17.11■□□□□ 0.33
CPSF1-213ENST00000620219 PDGFCQ9NRA1 345 aa17.11■□□□□ 0.33
CPSF1-213ENST00000620219 ANKEF1Q9NU02 776 aa17.11■□□□□ 0.33
CPSF1-213ENST00000620219 ERLIN2O94905 339 aa17.11■□□□□ 0.33
CPSF1-213ENST00000620219 MYL3P08590 195 aa17.11■□□□□ 0.33
CPSF1-213ENST00000620219 PAFAH1B1P43034 410 aa17.11■□□□□ 0.33
CPSF1-213ENST00000620219 ELMO3Q96BJ8 720 aa17.11■□□□□ 0.33
CPSF1-213ENST00000620219 NAPGQ99747 312 aaPredicted RBP17.11■□□□□ 0.33
CPSF1-213ENST00000620219 KIF11P52732 1056 aa17.1■□□□□ 0.33
CPSF1-213ENST00000620219 ARMCX2Q7L311 632 aa17.1■□□□□ 0.33
CPSF1-213ENST00000620219 NIPA1Q7RTP0 329 aa17.1■□□□□ 0.33
CPSF1-213ENST00000620219 KCNG1Q9UIX4 513 aa17.1■□□□□ 0.33
CPSF1-213ENST00000620219 A0A1W2PQC6 194 aa17.1■□□□□ 0.33
CPSF1-213ENST00000620219 CLDN3O15551 220 aa17.1■□□□□ 0.33
CPSF1-213ENST00000620219 GJC1P36383 396 aa17.1■□□□□ 0.33
CPSF1-213ENST00000620219 VAMP7P51809 220 aa17.1■□□□□ 0.33
CPSF1-213ENST00000620219 EDRF1Q3B7T1 1238 aa17.1■□□□□ 0.33
CPSF1-213ENST00000620219 OR6J1Q8NGC5 347 aa17.1■□□□□ 0.33
CPSF1-213ENST00000620219 INPP4AQ96PE3 977 aaPredicted RBP17.1■□□□□ 0.33
CPSF1-213ENST00000620219 RBPJLQ9UBG7 517 aa17.1■□□□□ 0.33
CPSF1-213ENST00000620219 A0A0G2JLL6 359 aaPredicted RBP17.1■□□□□ 0.33
CPSF1-213ENST00000620219 ZNF233A6NK53 670 aa17.1■□□□□ 0.33
CPSF1-213ENST00000620219 ABL1P00519 1130 aa17.1■□□□□ 0.33
CPSF1-213ENST00000620219 PRRT2Q7Z6L0 340 aaPredicted RBP17.1■□□□□ 0.33
CPSF1-213ENST00000620219 SAMD3Q8N6K7 520 aa17.1■□□□□ 0.33
CPSF1-213ENST00000620219 TARS2Q9BW92 718 aaKnown RBP17.1■□□□□ 0.33
CPSF1-213ENST00000620219 MYO1AQ9UBC5 1043 aa17.1■□□□□ 0.33
CPSF1-213ENST00000620219 DNAJC12Q9UKB3 198 aa17.1■□□□□ 0.33
CPSF1-213ENST00000620219 EPHB6O15197 1021 aa17.1■□□□□ 0.33
CPSF1-213ENST00000620219 TFRCP02786 760 aaKnown RBP17.1■□□□□ 0.33
CPSF1-213ENST00000620219 GFPT1Q06210 699 aaPredicted RBP17.1■□□□□ 0.33
CPSF1-213ENST00000620219 INTS8Q75QN2 995 aaKnown RBP17.1■□□□□ 0.33
CPSF1-213ENST00000620219 RNF169Q8NCN4 708 aa17.1■□□□□ 0.33
CPSF1-213ENST00000620219 ERO1AQ96HE7 468 aa17.1■□□□□ 0.33
CPSF1-213ENST00000620219 FAM167AQ96KS9 214 aa17.1■□□□□ 0.33
CPSF1-213ENST00000620219 MBOAT7Q96N66 472 aa17.1■□□□□ 0.33
CPSF1-213ENST00000620219 KCND2Q9NZV8 630 aa17.1■□□□□ 0.33
CPSF1-213ENST00000620219 PGAP2Q9UHJ9 254 aa17.1■□□□□ 0.33
CPSF1-213ENST00000620219 CAPN11Q9UMQ6 739 aa17.1■□□□□ 0.33
CPSF1-213ENST00000620219 CLCN3P51790 818 aa17.09■□□□□ 0.33
CPSF1-213ENST00000620219 TERF1P54274 439 aa17.09■□□□□ 0.33
CPSF1-213ENST00000620219 MAPK6Q16659 721 aa17.09■□□□□ 0.33
CPSF1-213ENST00000620219 PRAMEF19Q5SWL8 479 aa17.09■□□□□ 0.33
CPSF1-213ENST00000620219 AFG1LQ8WV93 481 aa17.09■□□□□ 0.33
CPSF1-213ENST00000620219 PLEKHA4Q9H4M7 779 aa17.09■□□□□ 0.33
CPSF1-213ENST00000620219 STAM2O75886 525 aa17.09■□□□□ 0.33
CPSF1-213ENST00000620219 ADCYAP1R1P41586 468 aa17.09■□□□□ 0.33
CPSF1-213ENST00000620219 ALCAMQ13740 583 aa17.09■□□□□ 0.33
CPSF1-213ENST00000620219 LRRN4CLQ8ND94 238 aa17.09■□□□□ 0.33
CPSF1-213ENST00000620219 NUCKS1Q9H1E3 243 aaKnown RBP17.09■□□□□ 0.33
CPSF1-213ENST00000620219 PIK3CAP42336 1068 aa17.09■□□□□ 0.33
CPSF1-213ENST00000620219 TFDP1Q14186 410 aa17.09■□□□□ 0.33
CPSF1-213ENST00000620219 ANO5Q75V66 913 aa17.09■□□□□ 0.33
CPSF1-213ENST00000620219 FRMD5Q7Z6J6 570 aa17.09■□□□□ 0.33
CPSF1-213ENST00000620219 SPC25Q9HBM1 224 aa17.09■□□□□ 0.33
CPSF1-213ENST00000620219 SLC26A4O43511 780 aa17.08■□□□□ 0.33
CPSF1-213ENST00000620219 ZNF286BP0CG31 522 aa17.08■□□□□ 0.33
CPSF1-213ENST00000620219 CD19P15391 556 aa17.08■□□□□ 0.33
CPSF1-213ENST00000620219 TNNT3P45378 269 aaPredicted RBP17.08■□□□□ 0.33
CPSF1-213ENST00000620219 HYIQ5T013 277 aa17.08■□□□□ 0.33
CPSF1-213ENST00000620219 PLEKHH3Q7Z736 793 aa17.08■□□□□ 0.33
CPSF1-213ENST00000620219 SLC17A8Q8NDX2 589 aa17.08■□□□□ 0.33
CPSF1-213ENST00000620219 SUCLA2Q9P2R7 463 aaPredicted RBP17.08■□□□□ 0.33
CPSF1-213ENST00000620219 COL2A1P02458 1487 aaPredicted RBP17.08■□□□□ 0.33
CPSF1-213ENST00000620219 TMEM191BP0C7N4 346 aa17.08■□□□□ 0.32
CPSF1-213ENST00000620219 METTL7BQ6UX53 244 aa17.08■□□□□ 0.32
CPSF1-213ENST00000620219 CBWD2Q8IUF1 395 aa17.08■□□□□ 0.32
CPSF1-213ENST00000620219 C1orf112Q9NSG2 853 aa17.08■□□□□ 0.32
CPSF1-213ENST00000620219 FRMPD4Q14CM0 1322 aa17.08■□□□□ 0.32
CPSF1-213ENST00000620219 CTAGE15A4D2H0 777 aa17.08■□□□□ 0.32
CPSF1-213ENST00000620219 SOWAHBA6NEL2 793 aa17.08■□□□□ 0.32
CPSF1-213ENST00000620219 CTAGE8P0CG41 777 aa17.08■□□□□ 0.32
CPSF1-213ENST00000620219 GCLCP48506 637 aaPredicted RBP17.08■□□□□ 0.32
CPSF1-213ENST00000620219 CTAGE6Q86UF2 777 aa17.08■□□□□ 0.32
CPSF1-213ENST00000620219 CTAGE4Q8IX94 777 aa17.08■□□□□ 0.32
CPSF1-213ENST00000620219 CTNNBL1Q8WYA6 563 aaPredicted RBP17.08■□□□□ 0.32
CPSF1-213ENST00000620219 MYPNQ86TC9 1320 aa17.08■□□□□ 0.32
CPSF1-213ENST00000620219 GUCY2CP25092 1073 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms