RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 AADACL2Q6P093 401 aa13.57□□□□□ -0.24
LIG1-221ENST00000613670 FUKQ8N0W3 1084 aa13.57□□□□□ -0.24
LIG1-221ENST00000613670 KIFAP3Q92845 792 aa13.57□□□□□ -0.24
LIG1-221ENST00000613670 LBHD1Q9BQE6 289 aaPredicted RBP13.57□□□□□ -0.24
LIG1-221ENST00000613670 TNS2Q63HR2 1409 aa13.57□□□□□ -0.24
LIG1-221ENST00000613670 H0Y3Z8 333 aa13.57□□□□□ -0.24
LIG1-221ENST00000613670 DDX3XO00571 662 aaKnown RBP eCLIP13.57□□□□□ -0.24
LIG1-221ENST00000613670 BRAFP15056 766 aa13.57□□□□□ -0.24
LIG1-221ENST00000613670 GAP43P17677 238 aa13.57□□□□□ -0.24
LIG1-221ENST00000613670 CLUL1Q15846 466 aa13.57□□□□□ -0.24
LIG1-221ENST00000613670 KCNV1Q6PIU1 500 aa13.57□□□□□ -0.24
LIG1-221ENST00000613670 EIF2AK1Q9BQI3 630 aaKnown RBP13.57□□□□□ -0.24
LIG1-221ENST00000613670 IKZF4Q9H2S9 585 aa13.57□□□□□ -0.24
LIG1-221ENST00000613670 ECT2Q9H8V3 914 aa13.57□□□□□ -0.24
LIG1-221ENST00000613670 SCP2P22307 547 aa13.57□□□□□ -0.24
LIG1-221ENST00000613670 RBM26Q5T8P6 1007 aaKnown RBP13.57□□□□□ -0.24
LIG1-221ENST00000613670 SLC51AQ86UW1 340 aa13.57□□□□□ -0.24
LIG1-221ENST00000613670 RHOT2Q8IXI1 618 aa13.57□□□□□ -0.24
LIG1-221ENST00000613670 FAM118BQ9BPY3 351 aa13.57□□□□□ -0.24
LIG1-221ENST00000613670 NOD2Q9HC29 1040 aa13.57□□□□□ -0.24
LIG1-221ENST00000613670 DAGLAQ9Y4D2 1042 aa13.57□□□□□ -0.24
LIG1-221ENST00000613670 RGPD5Q99666 1765 aa13.56□□□□□ -0.24
LIG1-221ENST00000613670 SHBGP04278 402 aa13.56□□□□□ -0.24
LIG1-221ENST00000613670 ATF7P17544 494 aaPredicted RBP13.56□□□□□ -0.24
LIG1-221ENST00000613670 FMO5P49326 533 aa13.56□□□□□ -0.24
LIG1-221ENST00000613670 TRPM8Q7Z2W7 1104 aa13.56□□□□□ -0.24
LIG1-221ENST00000613670 CNOT8Q9UFF9 292 aaKnown RBP13.56□□□□□ -0.24
LIG1-221ENST00000613670 ANAPC5Q9UJX4 755 aa13.56□□□□□ -0.24
LIG1-221ENST00000613670 SYNGAP1Q96PV0 1343 aa13.56□□□□□ -0.24
LIG1-221ENST00000613670 PODXLO00592 558 aa13.56□□□□□ -0.24
LIG1-221ENST00000613670 DIAPH2O60879 1101 aa13.56□□□□□ -0.24
LIG1-221ENST00000613670 FOSP01100 380 aaPredicted RBP13.56□□□□□ -0.24
LIG1-221ENST00000613670 MAPK4P31152 587 aa13.56□□□□□ -0.24
LIG1-221ENST00000613670 GPC5P78333 572 aa13.56□□□□□ -0.24
LIG1-221ENST00000613670 BARGINQ6ZT62 677 aa13.56□□□□□ -0.24
LIG1-221ENST00000613670 HAS1Q92839 578 aa13.56□□□□□ -0.24
LIG1-221ENST00000613670 RUSC1Q9BVN2 902 aa13.56□□□□□ -0.24
LIG1-221ENST00000613670 PABPC3Q9H361 631 aaKnown RBP13.56□□□□□ -0.24
LIG1-221ENST00000613670 RIOX1Q9H6W3 641 aa13.56□□□□□ -0.24
LIG1-221ENST00000613670 L3MBTL1Q9Y468 752 aa13.56□□□□□ -0.24
LIG1-221ENST00000613670 IKBKGQ9Y6K9 419 aa13.56□□□□□ -0.24
LIG1-221ENST00000613670 ZC3H4Q9UPT8 1303 aaKnown RBP13.56□□□□□ -0.24
LIG1-221ENST00000613670 RPS6KA4O75676 772 aa13.56□□□□□ -0.24
LIG1-221ENST00000613670 MXI1P50539 228 aa13.56□□□□□ -0.24
LIG1-221ENST00000613670 PPP4CP60510 307 aa13.56□□□□□ -0.24
LIG1-221ENST00000613670 ZRSR2Q15696 482 aaKnown RBP13.56□□□□□ -0.24
LIG1-221ENST00000613670 MIER3Q7Z3K6 550 aa13.56□□□□□ -0.24
LIG1-221ENST00000613670 BTBD6Q96KE9 485 aa13.56□□□□□ -0.24
LIG1-221ENST00000613670 RTFDC1Q9BY42 306 aaPredicted RBP13.56□□□□□ -0.24
LIG1-221ENST00000613670 EMSYQ7Z589 1322 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 WDR91A4D1P6 747 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 FAM187AA6NFU0 413 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 ATP2A1O14983 1001 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 TOM1O60784 492 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 SKAP2O75563 359 aaPredicted RBP13.55□□□□□ -0.24
LIG1-221ENST00000613670 MYCLP12524 364 aaPredicted RBP13.55□□□□□ -0.24
LIG1-221ENST00000613670 TNFRSF8P28908 595 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 CHRNA3P32297 505 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 GIT2Q14161 759 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 MREGQ8N565 214 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 ZNF577Q9BSK1 485 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 DBNDD1Q9H9R9 158 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 NOP53Q9NZM5 478 aaKnown RBP13.55□□□□□ -0.24
LIG1-221ENST00000613670 COMTP21964 271 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 ABCB5Q2M3G0 1257 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 TMEM119Q4V9L6 283 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 FAM102BQ5T8I3 360 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 SLC30A5Q8TAD4 765 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 STK33Q9BYT3 514 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 TRIM6Q9C030 488 aaPredicted RBP13.55□□□□□ -0.24
LIG1-221ENST00000613670 LMTK3Q96Q04 1460 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 FOXN3O00409 490 aaPredicted RBP13.55□□□□□ -0.24
LIG1-221ENST00000613670 HSPA6P17066 643 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 GBP1P32455 592 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 NT5C2P49902 561 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 RWDD2BP57060 319 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 COG2Q14746 738 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 SWT1Q5T5J6 900 aaKnown RBP13.55□□□□□ -0.24
LIG1-221ENST00000613670 RNF207Q6ZRF8 634 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 NT5DC3Q86UY8 548 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 AGPAT1Q99943 283 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 ETNK1Q9HBU6 452 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 ZNF148Q9UQR1 794 aa13.55□□□□□ -0.24
LIG1-221ENST00000613670 N4BP2Q86UW6 1770 aaPredicted RBP13.55□□□□□ -0.24
LIG1-221ENST00000613670 GPR75-ASB3A0A0A6YYF3 556 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 MIF4GDA9UHW6 222 aaKnown RBP13.54□□□□□ -0.24
LIG1-221ENST00000613670 CLDN3O15551 220 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 SORBS3O60504 671 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 TAF11Q15544 211 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 CD302Q8IX05 232 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 CYP2W1Q8TAV3 490 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 NSMCE1Q8WV22 266 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 CCDC17Q96LX7 622 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 NUP85Q9BW27 656 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 PITPNM3Q9BZ71 974 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 GANQ9H2C0 597 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 LCA5LO95447 670 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 HOXA7P31268 230 aaPredicted RBP13.54□□□□□ -0.24
LIG1-221ENST00000613670 MAPK7Q13164 816 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 DHX34Q14147 1143 aaKnown RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms