RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 LRRC71Q8N4P6 559 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 AOPEPQ8N6M6 819 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 MLKLQ8NB16 471 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 PSPC1Q8WXF1 523 aaKnown RBP11.15□□□□□ -0.62
UPF1-213ENST00000601981 LARP4BQ92615 738 aaKnown RBP11.15□□□□□ -0.62
UPF1-213ENST00000601981 DHX38Q92620 1227 aaKnown RBP11.15□□□□□ -0.62
UPF1-213ENST00000601981 TRIM43Q96BQ3 446 aaPredicted RBP11.15□□□□□ -0.62
UPF1-213ENST00000601981 PNMA5Q96PV4 448 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 GSDMAQ96QA5 445 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 CTAGE1Q96RT6 745 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 PLIN2Q99541 437 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 SH2D3AQ9BRG2 576 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 LRRC27Q9C0I9 530 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 TRPV2Q9Y5S1 764 aa11.15□□□□□ -0.62
UPF1-213ENST00000601981 IGKV6-21A0A0C4DH24 114 aa11.14□□□□□ -0.63
UPF1-213ENST00000601981 ZBTB39O15060 712 aa11.14□□□□□ -0.63
UPF1-213ENST00000601981 ADCY5O95622 1261 aa11.14□□□□□ -0.63
UPF1-213ENST00000601981 KRT18P05783 430 aaKnown RBP11.14□□□□□ -0.63
UPF1-213ENST00000601981 CTSHP09668 335 aa11.14□□□□□ -0.63
UPF1-213ENST00000601981 IQCF3P0C7M6 154 aa11.14□□□□□ -0.63
UPF1-213ENST00000601981 PLA2G4BP0C869 781 aa11.14□□□□□ -0.63
UPF1-213ENST00000601981 CYP2C18P33260 490 aa11.14□□□□□ -0.63
UPF1-213ENST00000601981 AFMP43652 599 aa11.14□□□□□ -0.63
UPF1-213ENST00000601981 CCL23P55773 120 aa11.14□□□□□ -0.63
UPF1-213ENST00000601981 TPM4P67936 248 aa11.14□□□□□ -0.63
UPF1-213ENST00000601981 TFDP1Q14186 410 aa11.14□□□□□ -0.63
UPF1-213ENST00000601981 PPP2R5AQ15172 486 aa11.14□□□□□ -0.63
UPF1-213ENST00000601981 ECM1Q16610 540 aa11.14□□□□□ -0.63
UPF1-213ENST00000601981 TRIM71Q2Q1W2 868 aaKnown RBP11.14□□□□□ -0.63
UPF1-213ENST00000601981 HS1BP3Q53T59 392 aa11.14□□□□□ -0.63
UPF1-213ENST00000601981 ZNF618Q5T7W0 954 aa11.14□□□□□ -0.63
UPF1-213ENST00000601981 FAM43BQ6ZT52 329 aaPredicted RBP11.14□□□□□ -0.63
UPF1-213ENST00000601981 SV2BQ7L1I2 683 aa11.14□□□□□ -0.63
UPF1-213ENST00000601981 KIAA0319LQ8IZA0 1049 aa11.14□□□□□ -0.63
UPF1-213ENST00000601981 SYT2Q8N9I0 419 aaPredicted RBP11.14□□□□□ -0.63
UPF1-213ENST00000601981 USP38Q8NB14 1042 aa11.14□□□□□ -0.63
UPF1-213ENST00000601981 RAD54LQ92698 747 aa11.14□□□□□ -0.63
UPF1-213ENST00000601981 KIFAP3Q92845 792 aa11.14□□□□□ -0.63
UPF1-213ENST00000601981 DRC1Q96MC2 740 aa11.14□□□□□ -0.63
UPF1-213ENST00000601981 INO80BQ9C086 356 aaPredicted RBP11.14□□□□□ -0.63
UPF1-213ENST00000601981 BMP2KQ9NSY1 1161 aaPredicted RBP11.14□□□□□ -0.63
UPF1-213ENST00000601981 KBTBD4Q9NVX7 518 aa11.14□□□□□ -0.63
UPF1-213ENST00000601981 RMND1Q9NWS8 449 aa11.14□□□□□ -0.63
UPF1-213ENST00000601981 SUCLA2Q9P2R7 463 aaPredicted RBP11.14□□□□□ -0.63
UPF1-213ENST00000601981 KCNG1Q9UIX4 513 aa11.14□□□□□ -0.63
UPF1-213ENST00000601981 CDY2AQ9Y6F7 541 aa11.14□□□□□ -0.63
UPF1-213ENST00000601981 VTNP04004 478 aa11.13□□□□□ -0.63
UPF1-213ENST00000601981 ACTN1P12814 892 aa11.13□□□□□ -0.63
UPF1-213ENST00000601981 CYP11B2P19099 503 aa11.13□□□□□ -0.63
UPF1-213ENST00000601981 FXR1P51114 621 aaKnown RBP eCLIP11.13□□□□□ -0.63
UPF1-213ENST00000601981 AMPD3Q01432 767 aa11.13□□□□□ -0.63
UPF1-213ENST00000601981 MYL5Q02045 173 aa11.13□□□□□ -0.63
UPF1-213ENST00000601981 FAM26DQ5JW98 314 aa11.13□□□□□ -0.63
UPF1-213ENST00000601981 FAM102BQ5T8I3 360 aa11.13□□□□□ -0.63
UPF1-213ENST00000601981 PSRC1Q6PGN9 363 aaPredicted RBP11.13□□□□□ -0.63
UPF1-213ENST00000601981 ZNF410Q86VK4 478 aa11.13□□□□□ -0.63
UPF1-213ENST00000601981 RHPN2Q8IUC4 686 aa11.13□□□□□ -0.63
UPF1-213ENST00000601981 LINC01465Q8N7H1 131 aa11.13□□□□□ -0.63
UPF1-213ENST00000601981 NLRP7Q8WX94 980 aa11.13□□□□□ -0.63
UPF1-213ENST00000601981 BADQ92934 168 aa11.13□□□□□ -0.63
UPF1-213ENST00000601981 WNT8BQ93098 351 aa11.13□□□□□ -0.63
UPF1-213ENST00000601981 ZBTB10Q96DT7 871 aa11.13□□□□□ -0.63
UPF1-213ENST00000601981 TRIM44Q96DX7 344 aaPredicted RBP11.13□□□□□ -0.63
UPF1-213ENST00000601981 IFT74Q96LB3 600 aa11.13□□□□□ -0.63
UPF1-213ENST00000601981 CEP89Q96ST8 783 aa11.13□□□□□ -0.63
UPF1-213ENST00000601981 CELF4Q9BZC1 486 aaKnown RBP11.13□□□□□ -0.63
UPF1-213ENST00000601981 GCOM2Q9BZD3 368 aaPredicted RBP11.13□□□□□ -0.63
UPF1-213ENST00000601981 MTIF3Q9H2K0 278 aaKnown RBP11.13□□□□□ -0.63
UPF1-213ENST00000601981 COLQQ9Y215 455 aaPredicted RBP11.13□□□□□ -0.63
UPF1-213ENST00000601981 GINS2Q9Y248 185 aa11.13□□□□□ -0.63
UPF1-213ENST00000601981 COL4A3BPQ9Y5P4 624 aa11.13□□□□□ -0.63
UPF1-213ENST00000601981 SQORQ9Y6N5 450 aa11.13□□□□□ -0.63
UPF1-213ENST00000601981 MICAL3Q7RTP6 2002 aa11.13□□□□□ -0.63
UPF1-213ENST00000601981 TET1Q8NFU7 2136 aa11.12□□□□□ -0.63
UPF1-213ENST00000601981 H0YGN5 161 aa11.12□□□□□ -0.63
UPF1-213ENST00000601981 AP5Z1O43299 807 aa11.12□□□□□ -0.63
UPF1-213ENST00000601981 TBCAO75347 108 aaKnown RBP11.12□□□□□ -0.63
UPF1-213ENST00000601981 BMP6P22004 513 aa11.12□□□□□ -0.63
UPF1-213ENST00000601981 GUCY2CP25092 1073 aa11.12□□□□□ -0.63
UPF1-213ENST00000601981 PHKA2P46019 1235 aa11.12□□□□□ -0.63
UPF1-213ENST00000601981 GPC3P51654 580 aa11.12□□□□□ -0.63
UPF1-213ENST00000601981 CRYBB1P53674 252 aaPredicted RBP11.12□□□□□ -0.63
UPF1-213ENST00000601981 SLC12A3P55017 1021 aa11.12□□□□□ -0.63
UPF1-213ENST00000601981 NLRP11P59045 1033 aaKnown RBP11.12□□□□□ -0.63
UPF1-213ENST00000601981 TMEM62Q0P6H9 643 aa11.12□□□□□ -0.63
UPF1-213ENST00000601981 CUL4BQ13620 913 aa11.12□□□□□ -0.63
UPF1-213ENST00000601981 DHX8Q14562 1220 aaKnown RBP11.12□□□□□ -0.63
UPF1-213ENST00000601981 MCM6Q14566 821 aa11.12□□□□□ -0.63
UPF1-213ENST00000601981 KCNB1Q14721 858 aa11.12□□□□□ -0.63
UPF1-213ENST00000601981 NCAPHQ15003 741 aa11.12□□□□□ -0.63
UPF1-213ENST00000601981 ISM2Q6H9L7 571 aa11.12□□□□□ -0.63
UPF1-213ENST00000601981 RINT1Q6NUQ1 792 aa11.12□□□□□ -0.63
UPF1-213ENST00000601981 KCNK18Q7Z418 384 aa11.12□□□□□ -0.63
UPF1-213ENST00000601981 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.12□□□□□ -0.63
UPF1-213ENST00000601981 GPBP1Q86WP2 473 aa11.12□□□□□ -0.63
UPF1-213ENST00000601981 APBB2Q92870 758 aa11.12□□□□□ -0.63
UPF1-213ENST00000601981 TMEM143Q96AN5 459 aa11.12□□□□□ -0.63
UPF1-213ENST00000601981 SCLYQ96I15 445 aa11.12□□□□□ -0.63
UPF1-213ENST00000601981 NLRP4Q96MN2 994 aa11.12□□□□□ -0.63
UPF1-213ENST00000601981 GTPBP4Q9BZE4 634 aaKnown RBP11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms