RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 MYO9BQ13459 2157 aa18.73■□□□□ 0.59
TRIM28-215ENST00000601150 LINC01553A4QN01 128 aa18.72■□□□□ 0.59
TRIM28-215ENST00000601150 C9IYK1 514 aa18.72■□□□□ 0.59
TRIM28-215ENST00000601150 CYP11B2P19099 503 aa18.72■□□□□ 0.59
TRIM28-215ENST00000601150 PHKA2P46019 1235 aa18.72■□□□□ 0.59
TRIM28-215ENST00000601150 HYIQ5T013 277 aa18.72■□□□□ 0.59
TRIM28-215ENST00000601150 SRGAP1Q7Z6B7 1085 aa18.72■□□□□ 0.59
TRIM28-215ENST00000601150 CRIPAKQ8N1N5 446 aa18.72■□□□□ 0.59
TRIM28-215ENST00000601150 BHMT2Q9H2M3 363 aa18.72■□□□□ 0.59
TRIM28-215ENST00000601150 COL4A4P53420 1690 aaPredicted RBP18.72■□□□□ 0.59
TRIM28-215ENST00000601150 FNDC1Q4ZHG4 1894 aaPredicted RBP18.71■□□□□ 0.59
TRIM28-215ENST00000601150 SLC26A4O43511 780 aa18.71■□□□□ 0.59
TRIM28-215ENST00000601150 DGKIO75912 1065 aa18.71■□□□□ 0.59
TRIM28-215ENST00000601150 EYA4O95677 639 aa18.71■□□□□ 0.59
TRIM28-215ENST00000601150 LONP1P36776 959 aaKnown RBP18.71■□□□□ 0.59
TRIM28-215ENST00000601150 POU5F1BQ06416 359 aa18.71■□□□□ 0.59
TRIM28-215ENST00000601150 PTPAQ15257 358 aa18.71■□□□□ 0.59
TRIM28-215ENST00000601150 ZRSR1Q15695 479 aaKnown RBP18.71■□□□□ 0.59
TRIM28-215ENST00000601150 MAEAQ7L5Y9 396 aa18.71■□□□□ 0.59
TRIM28-215ENST00000601150 CATSPER4Q7RTX7 472 aa18.71■□□□□ 0.59
TRIM28-215ENST00000601150 KCTD17Q8N5Z5 321 aa18.71■□□□□ 0.59
TRIM28-215ENST00000601150 ASAP3Q8TDY4 903 aa18.71■□□□□ 0.59
TRIM28-215ENST00000601150 CDK5RAP3Q96JB5 506 aa18.71■□□□□ 0.59
TRIM28-215ENST00000601150 TGS1Q96RS0 853 aaKnown RBP18.71■□□□□ 0.59
TRIM28-215ENST00000601150 GAS2L1Q99501 681 aaPredicted RBP18.71■□□□□ 0.59
TRIM28-215ENST00000601150 NT5C3AQ9H0P0 336 aa18.71■□□□□ 0.59
TRIM28-215ENST00000601150 CERS4Q9HA82 394 aa18.71■□□□□ 0.59
TRIM28-215ENST00000601150 CHST12Q9NRB3 414 aa18.71■□□□□ 0.59
TRIM28-215ENST00000601150 PCDHB7Q9Y5E2 793 aa18.71■□□□□ 0.59
TRIM28-215ENST00000601150 ADGRA3Q8IWK6 1321 aa18.71■□□□□ 0.59
TRIM28-215ENST00000601150 KIAA1671Q9BY89 1806 aa18.7■□□□□ 0.58
TRIM28-215ENST00000601150 E9PMD0 336 aa18.7■□□□□ 0.58
TRIM28-215ENST00000601150 ZSCAN22P10073 491 aaPredicted RBP18.7■□□□□ 0.58
TRIM28-215ENST00000601150 IBSPP21815 317 aaPredicted RBP18.7■□□□□ 0.58
TRIM28-215ENST00000601150 GLRA2P23416 452 aa18.7■□□□□ 0.58
TRIM28-215ENST00000601150 UBA7P41226 1012 aa18.7■□□□□ 0.58
TRIM28-215ENST00000601150 ERVK-21P61565 698 aa18.7■□□□□ 0.58
TRIM28-215ENST00000601150 FAM189BP81408 668 aa18.7■□□□□ 0.58
TRIM28-215ENST00000601150 CEBPZQ03701 1054 aaKnown RBP18.7■□□□□ 0.58
TRIM28-215ENST00000601150 CAPSQ13938 189 aa18.7■□□□□ 0.58
TRIM28-215ENST00000601150 FAM102BQ5T8I3 360 aa18.7■□□□□ 0.58
TRIM28-215ENST00000601150 CABP7Q86V35 215 aa18.7■□□□□ 0.58
TRIM28-215ENST00000601150 ARNTL2Q8WYA1 636 aa18.7■□□□□ 0.58
TRIM28-215ENST00000601150 ZNF689Q96CS4 500 aaPredicted RBP18.7■□□□□ 0.58
TRIM28-215ENST00000601150 PNMA5Q96PV4 448 aa18.7■□□□□ 0.58
TRIM28-215ENST00000601150 USP28Q96RU2 1077 aa18.7■□□□□ 0.58
TRIM28-215ENST00000601150 RC3H2Q9HBD1 1191 aaKnown RBP18.7■□□□□ 0.58
TRIM28-215ENST00000601150 GPRC5CQ9NQ84 441 aa18.7■□□□□ 0.58
TRIM28-215ENST00000601150 DACT1Q9NYF0 836 aa18.7■□□□□ 0.58
TRIM28-215ENST00000601150 FOSL2P15408 326 aa18.69■□□□□ 0.58
TRIM28-215ENST00000601150 PTENP60484 403 aa18.69■□□□□ 0.58
TRIM28-215ENST00000601150 GRIN1Q05586 938 aa18.69■□□□□ 0.58
TRIM28-215ENST00000601150 GRB10Q13322 594 aa18.69■□□□□ 0.58
TRIM28-215ENST00000601150 FOXD4L5Q5VV16 416 aaPredicted RBP18.69■□□□□ 0.58
TRIM28-215ENST00000601150 KCNK18Q7Z418 384 aa18.69■□□□□ 0.58
TRIM28-215ENST00000601150 SPRED2Q7Z698 418 aa18.69■□□□□ 0.58
TRIM28-215ENST00000601150 IFNLR1Q8IU57 520 aaPredicted RBP18.69■□□□□ 0.58
TRIM28-215ENST00000601150 FIBCD1Q8N539 461 aa18.69■□□□□ 0.58
TRIM28-215ENST00000601150 FOXD4L4Q8WXT5 416 aaPredicted RBP18.69■□□□□ 0.58
TRIM28-215ENST00000601150 ZNF396Q96N95 335 aaPredicted RBP18.69■□□□□ 0.58
TRIM28-215ENST00000601150 SAMD11Q96NU1 681 aa18.69■□□□□ 0.58
TRIM28-215ENST00000601150 ELAC1Q9H777 363 aaKnown RBP18.69■□□□□ 0.58
TRIM28-215ENST00000601150 MINDY3Q9H8M7 445 aa18.69■□□□□ 0.58
TRIM28-215ENST00000601150 AGPAT5Q9NUQ2 364 aa18.69■□□□□ 0.58
TRIM28-215ENST00000601150 TMEM161AQ9NX61 479 aa18.69■□□□□ 0.58
TRIM28-215ENST00000601150 PIN4Q9Y237 131 aaKnown RBP18.69■□□□□ 0.58
TRIM28-215ENST00000601150 MYH11P35749 1972 aa18.69■□□□□ 0.58
TRIM28-215ENST00000601150 MARCKSP29966 332 aaPredicted RBP18.68■□□□□ 0.58
TRIM28-215ENST00000601150 BTG3Q14201 252 aaPredicted RBP18.68■□□□□ 0.58
TRIM28-215ENST00000601150 BECN1Q14457 450 aa18.68■□□□□ 0.58
TRIM28-215ENST00000601150 SLC39A14Q15043 492 aa18.68■□□□□ 0.58
TRIM28-215ENST00000601150 PCBP1Q15365 356 aaKnown RBP eCLIP18.68■□□□□ 0.58
TRIM28-215ENST00000601150 TMEM119Q4V9L6 283 aa18.68■□□□□ 0.58
TRIM28-215ENST00000601150 ECHDC2Q86YB7 292 aa18.68■□□□□ 0.58
TRIM28-215ENST00000601150 CMTR2Q8IYT2 770 aaKnown RBP18.68■□□□□ 0.58
TRIM28-215ENST00000601150 CALML4Q96GE6 196 aa18.68■□□□□ 0.58
TRIM28-215ENST00000601150 PLIN2Q99541 437 aa18.68■□□□□ 0.58
TRIM28-215ENST00000601150 NFKBIZQ9BYH8 718 aa18.68■□□□□ 0.58
TRIM28-215ENST00000601150 FBXO2Q9UK22 296 aaPredicted RBP18.68■□□□□ 0.58
TRIM28-215ENST00000601150 MTUS1Q9ULD2 1270 aa18.68■□□□□ 0.58
TRIM28-215ENST00000601150 SRPRBQ9Y5M8 271 aaKnown RBP18.68■□□□□ 0.58
TRIM28-215ENST00000601150 MORC2Q9Y6X9 1032 aaPredicted RBP18.68■□□□□ 0.58
TRIM28-215ENST00000601150 A0A0U1RQF3 1178 aa18.67■□□□□ 0.58
TRIM28-215ENST00000601150 LRRIQ4A6NIV6 560 aa18.67■□□□□ 0.58
TRIM28-215ENST00000601150 INO80B-WBP1J3KQ70 363 aa18.67■□□□□ 0.58
TRIM28-215ENST00000601150 ERLIN2O94905 339 aa18.67■□□□□ 0.58
TRIM28-215ENST00000601150 F13A1P00488 732 aa18.67■□□□□ 0.58
TRIM28-215ENST00000601150 NASPP49321 788 aaPredicted RBP18.67■□□□□ 0.58
TRIM28-215ENST00000601150 TWF2Q6IBS0 349 aaKnown RBP18.67■□□□□ 0.58
TRIM28-215ENST00000601150 KIFAP3Q92845 792 aa18.67■□□□□ 0.58
TRIM28-215ENST00000601150 C17orf80Q9BSJ5 609 aa18.67■□□□□ 0.58
TRIM28-215ENST00000601150 TRAIPQ9BWF2 469 aa18.67■□□□□ 0.58
TRIM28-215ENST00000601150 CSRNP2Q9H175 543 aa18.67■□□□□ 0.58
TRIM28-215ENST00000601150 EPOPA6NHQ4 379 aa18.66■□□□□ 0.58
TRIM28-215ENST00000601150 RFXAPO00287 272 aa18.66■□□□□ 0.58
TRIM28-215ENST00000601150 SKIP12755 728 aa18.66■□□□□ 0.58
TRIM28-215ENST00000601150 MBTD1Q05BQ5 628 aa18.66■□□□□ 0.58
TRIM28-215ENST00000601150 ADGRE1Q14246 886 aa18.66■□□□□ 0.58
TRIM28-215ENST00000601150 PPP2R5AQ15172 486 aa18.66■□□□□ 0.58
TRIM28-215ENST00000601150 STK38Q15208 465 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms