RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 MTHFD1LQ6UB35 978 aa17.02■□□□□ 0.32
UPF1-206ENST00000598471 CXCL17Q6UXB2 119 aa17.02■□□□□ 0.32
UPF1-206ENST00000598471 PPP4R3CPQ6ZMV5 832 aa17.02■□□□□ 0.32
UPF1-206ENST00000598471 LRRC71Q8N4P6 559 aa17.02■□□□□ 0.32
UPF1-206ENST00000598471 GLIS3Q8NEA6 775 aa17.02■□□□□ 0.32
UPF1-206ENST00000598471 DEPTORQ8TB45 409 aa17.02■□□□□ 0.32
UPF1-206ENST00000598471 NOC3LQ8WTT2 800 aaKnown RBP17.02■□□□□ 0.32
UPF1-206ENST00000598471 SCFD1Q8WVM8 642 aa17.02■□□□□ 0.32
UPF1-206ENST00000598471 ZNF333Q96JL9 665 aa17.02■□□□□ 0.32
UPF1-206ENST00000598471 FIZ1Q96SL8 496 aa17.02■□□□□ 0.32
UPF1-206ENST00000598471 NTPCRQ9BSD7 190 aaKnown RBP17.02■□□□□ 0.32
UPF1-206ENST00000598471 TSEN34Q9BSV6 310 aaKnown RBP17.02■□□□□ 0.32
UPF1-206ENST00000598471 TMEM206Q9H813 350 aa17.02■□□□□ 0.32
UPF1-206ENST00000598471 SETD4Q9NVD3 440 aa17.02■□□□□ 0.32
UPF1-206ENST00000598471 SUCLA2Q9P2R7 463 aaPredicted RBP17.02■□□□□ 0.32
UPF1-206ENST00000598471 NFE2L3Q9Y4A8 694 aa17.02■□□□□ 0.32
UPF1-206ENST00000598471 C17orf102A2RUQ5 167 aa17.01■□□□□ 0.31
UPF1-206ENST00000598471 LRRIQ4A6NIV6 560 aa17.01■□□□□ 0.31
UPF1-206ENST00000598471 SLC16A4O15374 487 aa17.01■□□□□ 0.31
UPF1-206ENST00000598471 PRPF6O94906 941 aaKnown RBP17.01■□□□□ 0.31
UPF1-206ENST00000598471 FGFR1OPO95684 399 aaKnown RBP17.01■□□□□ 0.31
UPF1-206ENST00000598471 GLRA2P23416 452 aa17.01■□□□□ 0.31
UPF1-206ENST00000598471 CLCN3P51790 818 aa17.01■□□□□ 0.31
UPF1-206ENST00000598471 CASP5P51878 434 aa17.01■□□□□ 0.31
UPF1-206ENST00000598471 KNOP1Q1ED39 458 aaKnown RBP17.01■□□□□ 0.31
UPF1-206ENST00000598471 LHX8Q68G74 356 aa17.01■□□□□ 0.31
UPF1-206ENST00000598471 CENPPQ6IPU0 288 aa17.01■□□□□ 0.31
UPF1-206ENST00000598471 NFRKBQ6P4R8 1299 aa17.01■□□□□ 0.31
UPF1-206ENST00000598471 HAUS6Q7Z4H7 955 aa17.01■□□□□ 0.31
UPF1-206ENST00000598471 NELFCDQ8IXH7 590 aa17.01■□□□□ 0.31
UPF1-206ENST00000598471 GOLGA5Q8TBA6 731 aa17.01■□□□□ 0.31
UPF1-206ENST00000598471 ASAP3Q8TDY4 903 aa17.01■□□□□ 0.31
UPF1-206ENST00000598471 LMBR1Q8WVP7 490 aa17.01■□□□□ 0.31
UPF1-206ENST00000598471 BSNDQ8WZ55 320 aa17.01■□□□□ 0.31
UPF1-206ENST00000598471 ANP32BQ92688 251 aaKnown RBP17.01■□□□□ 0.31
UPF1-206ENST00000598471 ACCSQ96QU6 501 aa17.01■□□□□ 0.31
UPF1-206ENST00000598471 FGFBP2Q9BYJ0 223 aa17.01■□□□□ 0.31
UPF1-206ENST00000598471 UNC93B1Q9H1C4 597 aa17.01■□□□□ 0.31
UPF1-206ENST00000598471 EXOC7Q9UPT5 735 aa17.01■□□□□ 0.31
UPF1-206ENST00000598471 MYH11P35749 1972 aa17■□□□□ 0.31
UPF1-206ENST00000598471 KBTBD13C9JR72 458 aa17■□□□□ 0.31
UPF1-206ENST00000598471 CALUO43852 315 aaPredicted RBP17■□□□□ 0.31
UPF1-206ENST00000598471 CAPN15O75808 1086 aa17■□□□□ 0.31
UPF1-206ENST00000598471 PPP1R37O75864 691 aa17■□□□□ 0.31
UPF1-206ENST00000598471 GTF2BQ00403 316 aa17■□□□□ 0.31
UPF1-206ENST00000598471 NCAPHQ15003 741 aa17■□□□□ 0.31
UPF1-206ENST00000598471 CCSAPQ6IQ19 270 aaPredicted RBP17■□□□□ 0.31
UPF1-206ENST00000598471 TTI2Q6NXR4 508 aa17■□□□□ 0.31
UPF1-206ENST00000598471 HS2ST1Q7LGA3 356 aa17■□□□□ 0.31
UPF1-206ENST00000598471 ZBTB8OSQ8IWT0 167 aa17■□□□□ 0.31
UPF1-206ENST00000598471 SYCP3Q8IZU3 236 aa17■□□□□ 0.31
UPF1-206ENST00000598471 TMEM161BQ8NDZ6 487 aa17■□□□□ 0.31
UPF1-206ENST00000598471 PRPF31Q8WWY3 499 aaKnown RBP17■□□□□ 0.31
UPF1-206ENST00000598471 C2orf40Q9H1Z8 148 aa17■□□□□ 0.31
UPF1-206ENST00000598471 TYW1Q9NV66 732 aaKnown RBP17■□□□□ 0.31
UPF1-206ENST00000598471 AKT3Q9Y243 479 aa17■□□□□ 0.31
UPF1-206ENST00000598471 DENND3A2RUS2 1198 aa16.99■□□□□ 0.31
UPF1-206ENST00000598471 TRIM49BA6NDI0 452 aa16.99■□□□□ 0.31
UPF1-206ENST00000598471 PDXKO00764 312 aa16.99■□□□□ 0.31
UPF1-206ENST00000598471 CCL5P13501 91 aa16.99■□□□□ 0.31
UPF1-206ENST00000598471 EFNA5P52803 228 aa16.99■□□□□ 0.31
UPF1-206ENST00000598471 ACLYP53396 1101 aa16.99■□□□□ 0.31
UPF1-206ENST00000598471 CDC42EP1Q00587 391 aa16.99■□□□□ 0.31
UPF1-206ENST00000598471 LAMTOR4Q0VGL1 99 aa16.99■□□□□ 0.31
UPF1-206ENST00000598471 STRN3Q13033 797 aa16.99■□□□□ 0.31
UPF1-206ENST00000598471 CAPSQ13938 189 aa16.99■□□□□ 0.31
UPF1-206ENST00000598471 NBPF20Q3BBV1 942 aa16.99■□□□□ 0.31
UPF1-206ENST00000598471 ZC2HC1CQ53FD0 456 aaPredicted RBP16.99■□□□□ 0.31
UPF1-206ENST00000598471 RHPN2Q8IUC4 686 aa16.99■□□□□ 0.31
UPF1-206ENST00000598471 FAM114A1Q8IWE2 563 aa16.99■□□□□ 0.31
UPF1-206ENST00000598471 CSGALNACT2Q8N6G5 542 aa16.99■□□□□ 0.31
UPF1-206ENST00000598471 LINC01465Q8N7H1 131 aa16.99■□□□□ 0.31
UPF1-206ENST00000598471 ANKRD20A12PQ8NF67 263 aa16.99■□□□□ 0.31
UPF1-206ENST00000598471 KCNN1Q92952 543 aa16.99■□□□□ 0.31
UPF1-206ENST00000598471 VTI1AQ96AJ9 217 aa16.99■□□□□ 0.31
UPF1-206ENST00000598471 GLT1D1Q96MS3 346 aa16.99■□□□□ 0.31
UPF1-206ENST00000598471 STRA6Q9BX79 667 aa16.99■□□□□ 0.31
UPF1-206ENST00000598471 RNF208Q9H0X6 261 aa16.99■□□□□ 0.31
UPF1-206ENST00000598471 SEMA6BQ9H3T3 888 aa16.99■□□□□ 0.31
UPF1-206ENST00000598471 PAK6Q9NQU5 681 aaPredicted RBP16.99■□□□□ 0.31
UPF1-206ENST00000598471 CGNQ9P2M7 1197 aaKnown RBP16.99■□□□□ 0.31
UPF1-206ENST00000598471 ARHGAP28Q9P2N2 729 aa16.99■□□□□ 0.31
UPF1-206ENST00000598471 HDAC6Q9UBN7 1215 aa16.99■□□□□ 0.31
UPF1-206ENST00000598471 SMIM35A0A1B0GVV1 85 aa16.98■□□□□ 0.31
UPF1-206ENST00000598471 MBLAC1A4D2B0 266 aaPredicted RBP16.98■□□□□ 0.31
UPF1-206ENST00000598471 CYP2C9P11712 490 aa16.98■□□□□ 0.31
UPF1-206ENST00000598471 CDK11BP21127 795 aaKnown RBP16.98■□□□□ 0.31
UPF1-206ENST00000598471 PHKA2P46019 1235 aa16.98■□□□□ 0.31
UPF1-206ENST00000598471 SNRPFP62306 86 aaKnown RBP16.98■□□□□ 0.31
UPF1-206ENST00000598471 PTPN11Q06124 597 aaPredicted RBP16.98■□□□□ 0.31
UPF1-206ENST00000598471 POU5F1BQ06416 359 aa16.98■□□□□ 0.31
UPF1-206ENST00000598471 SPAG1Q07617 926 aa16.98■□□□□ 0.31
UPF1-206ENST00000598471 MKRN4PQ13434 485 aaPredicted RBP16.98■□□□□ 0.31
UPF1-206ENST00000598471 DRP2Q13474 957 aa16.98■□□□□ 0.31
UPF1-206ENST00000598471 EDRF1Q3B7T1 1238 aa16.98■□□□□ 0.31
UPF1-206ENST00000598471 FAM47CQ5HY64 1035 aa16.98■□□□□ 0.31
UPF1-206ENST00000598471 MARCH8Q5T0T0 291 aa16.98■□□□□ 0.31
UPF1-206ENST00000598471 ANKRD40Q6AI12 368 aa16.98■□□□□ 0.31
UPF1-206ENST00000598471 SESTD1Q86VW0 696 aa16.98■□□□□ 0.31
UPF1-206ENST00000598471 ZNF710Q8N1W2 664 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 152.5 ms