RNA–Protein interactions for RNA: ENST00000597215.5

VRK3-213, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 836 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-213ENST00000597215 RNF149Q8NC42 400 aa15.9■□□□□ 0.14
VRK3-213ENST00000597215 TET1Q8NFU7 2136 aa15.9■□□□□ 0.14
VRK3-213ENST00000597215 GDF15Q99988 308 aa15.9■□□□□ 0.14
VRK3-213ENST00000597215 FDXACB1Q9BRP7 624 aaPredicted RBP15.9■□□□□ 0.14
VRK3-213ENST00000597215 INO80BQ9C086 356 aaPredicted RBP15.9■□□□□ 0.14
VRK3-213ENST00000597215 LRRC27Q9C0I9 530 aa15.9■□□□□ 0.14
VRK3-213ENST00000597215 GOLPH3LQ9H4A5 285 aa15.9■□□□□ 0.14
VRK3-213ENST00000597215 C17orf75Q9HAS0 396 aa15.9■□□□□ 0.14
VRK3-213ENST00000597215 CDHR5Q9HBB8 845 aa15.9■□□□□ 0.14
VRK3-213ENST00000597215 KBTBD4Q9NVX7 518 aa15.9■□□□□ 0.14
VRK3-213ENST00000597215 NPHP3-ACAD11A0A0J9YXS1 232 aa15.89■□□□□ 0.13
VRK3-213ENST00000597215 LRRIQ4A6NIV6 560 aa15.89■□□□□ 0.13
VRK3-213ENST00000597215 TBCAO75347 108 aaKnown RBP15.89■□□□□ 0.13
VRK3-213ENST00000597215 RPS6KA5O75582 802 aa15.89■□□□□ 0.13
VRK3-213ENST00000597215 SLFN14P0C7P3 912 aa15.89■□□□□ 0.13
VRK3-213ENST00000597215 DARSP14868 501 aaKnown RBP15.89■□□□□ 0.13
VRK3-213ENST00000597215 NAMPTP43490 491 aa15.89■□□□□ 0.13
VRK3-213ENST00000597215 POU5F1BQ06416 359 aa15.89■□□□□ 0.13
VRK3-213ENST00000597215 PAK2Q13177 524 aa15.89■□□□□ 0.13
VRK3-213ENST00000597215 PLEKHG4Q58EX7 1191 aa15.89■□□□□ 0.13
VRK3-213ENST00000597215 CNKSR3Q6P9H4 555 aa15.89■□□□□ 0.13
VRK3-213ENST00000597215 PSRC1Q6PGN9 363 aaPredicted RBP15.89■□□□□ 0.13
VRK3-213ENST00000597215 SRGAP1Q7Z6B7 1085 aa15.89■□□□□ 0.13
VRK3-213ENST00000597215 DAW1Q8N136 415 aa15.89■□□□□ 0.13
VRK3-213ENST00000597215 TMEM40Q8WWA1 233 aa15.89■□□□□ 0.13
VRK3-213ENST00000597215 SEPT8Q92599 483 aa15.89■□□□□ 0.13
VRK3-213ENST00000597215 APBB2Q92870 758 aa15.89■□□□□ 0.13
VRK3-213ENST00000597215 REEP2Q9BRK0 252 aa15.89■□□□□ 0.13
VRK3-213ENST00000597215 IFIH1Q9BYX4 1025 aaKnown RBP15.89■□□□□ 0.13
VRK3-213ENST00000597215 UBE2OQ9C0C9 1292 aaKnown RBP15.89■□□□□ 0.13
VRK3-213ENST00000597215 SERTAD1Q9UHV2 236 aa15.89■□□□□ 0.13
VRK3-213ENST00000597215 MYMKA6NI61 221 aa15.88■□□□□ 0.13
VRK3-213ENST00000597215 GPR182O15218 404 aa15.88■□□□□ 0.13
VRK3-213ENST00000597215 ACTN4O43707 911 aaKnown RBP15.88■□□□□ 0.13
VRK3-213ENST00000597215 FAM13AO94988 1023 aa15.88■□□□□ 0.13
VRK3-213ENST00000597215 ACRP10323 421 aa15.88■□□□□ 0.13
VRK3-213ENST00000597215 ACTN1P12814 892 aa15.88■□□□□ 0.13
VRK3-213ENST00000597215 SFPQP23246 707 aaKnown RBP eCLIP15.88■□□□□ 0.13
VRK3-213ENST00000597215 PTENP60484 403 aa15.88■□□□□ 0.13
VRK3-213ENST00000597215 UBE2HP62256 183 aa15.88■□□□□ 0.13
VRK3-213ENST00000597215 CACNB1Q02641 598 aaPredicted RBP15.88■□□□□ 0.13
VRK3-213ENST00000597215 DMP1Q13316 513 aaPredicted RBP15.88■□□□□ 0.13
VRK3-213ENST00000597215 GIT2Q14161 759 aa15.88■□□□□ 0.13
VRK3-213ENST00000597215 DYMQ7RTS9 669 aa15.88■□□□□ 0.13
VRK3-213ENST00000597215 FAM228AQ86W67 206 aa15.88■□□□□ 0.13
VRK3-213ENST00000597215 DEPTORQ8TB45 409 aa15.88■□□□□ 0.13
VRK3-213ENST00000597215 BSNDQ8WZ55 320 aa15.88■□□□□ 0.13
VRK3-213ENST00000597215 DDX12PQ92771 950 aa15.88■□□□□ 0.13
VRK3-213ENST00000597215 VWCEQ96DN2 955 aa15.88■□□□□ 0.13
VRK3-213ENST00000597215 NFKBIZQ9BYH8 718 aa15.88■□□□□ 0.13
VRK3-213ENST00000597215 OSBPL7Q9BZF2 842 aa15.88■□□□□ 0.13
VRK3-213ENST00000597215 C2orf40Q9H1Z8 148 aa15.88■□□□□ 0.13
VRK3-213ENST00000597215 AGO3Q9H9G7 860 aaKnown RBP15.88■□□□□ 0.13
VRK3-213ENST00000597215 IFT122Q9HBG6 1241 aa15.88■□□□□ 0.13
VRK3-213ENST00000597215 POLD4Q9HCU8 107 aa15.88■□□□□ 0.13
VRK3-213ENST00000597215 LARSQ9P2J5 1176 aaKnown RBP15.88■□□□□ 0.13
VRK3-213ENST00000597215 KCNG1Q9UIX4 513 aa15.88■□□□□ 0.13
VRK3-213ENST00000597215 NOC2LQ9Y3T9 749 aaKnown RBP15.88■□□□□ 0.13
VRK3-213ENST00000597215 ZNF202O95125 648 aa15.87■□□□□ 0.13
VRK3-213ENST00000597215 FGBP02675 491 aa15.87■□□□□ 0.13
VRK3-213ENST00000597215 PLS3P13797 630 aa15.87■□□□□ 0.13
VRK3-213ENST00000597215 CD52P31358 61 aa15.87■□□□□ 0.13
VRK3-213ENST00000597215 BMP8BP34820 402 aa15.87■□□□□ 0.13
VRK3-213ENST00000597215 EPHB4P54760 987 aa15.87■□□□□ 0.13
VRK3-213ENST00000597215 PEX3P56589 373 aa15.87■□□□□ 0.13
VRK3-213ENST00000597215 FAM160A1Q05DH4 1040 aa15.87■□□□□ 0.13
VRK3-213ENST00000597215 LONRF3Q496Y0 759 aa15.87■□□□□ 0.13
VRK3-213ENST00000597215 TMEM240Q5SV17 173 aa15.87■□□□□ 0.13
VRK3-213ENST00000597215 PRPF38BQ5VTL8 546 aaKnown RBP15.87■□□□□ 0.13
VRK3-213ENST00000597215 FAM43BQ6ZT52 329 aaPredicted RBP15.87■□□□□ 0.13
VRK3-213ENST00000597215 IFNLR1Q8IU57 520 aaPredicted RBP15.87■□□□□ 0.13
VRK3-213ENST00000597215 ZBTB8OSQ8IWT0 167 aa15.87■□□□□ 0.13
VRK3-213ENST00000597215 FMR1NBQ8N0W7 255 aaPredicted RBP15.87■□□□□ 0.13
VRK3-213ENST00000597215 DBF4BQ8NFT6 615 aa15.87■□□□□ 0.13
VRK3-213ENST00000597215 STAMQ92783 540 aa15.87■□□□□ 0.13
VRK3-213ENST00000597215 CCDC34Q96HJ3 373 aa15.87■□□□□ 0.13
VRK3-213ENST00000597215 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.87■□□□□ 0.138e-11■■■■□ 20.6
VRK3-213ENST00000597215 MTIF3Q9H2K0 278 aaKnown RBP15.87■□□□□ 0.13
VRK3-213ENST00000597215 PARVGQ9HBI0 331 aa15.87■□□□□ 0.13
VRK3-213ENST00000597215 ERVK-5Q9HDB9 667 aa15.87■□□□□ 0.13
VRK3-213ENST00000597215 PADI3Q9ULW8 664 aa15.87■□□□□ 0.13
VRK3-213ENST00000597215 CCDC169A6NNP5 214 aa15.86■□□□□ 0.13
VRK3-213ENST00000597215 SFI1A8K8P3 1242 aa15.86■□□□□ 0.13
VRK3-213ENST00000597215 GOLGA6L22H0YM25 854 aa15.86■□□□□ 0.13
VRK3-213ENST00000597215 EFCAB14O75071 495 aa15.86■□□□□ 0.13
VRK3-213ENST00000597215 GADD45BO75293 160 aaPredicted RBP15.86■□□□□ 0.13
VRK3-213ENST00000597215 PRPF40AO75400 957 aaKnown RBP15.86■□□□□ 0.13
VRK3-213ENST00000597215 BAIAP3O94812 1187 aa15.86■□□□□ 0.13
VRK3-213ENST00000597215 NPTX2P47972 431 aa15.86■□□□□ 0.13
VRK3-213ENST00000597215 ZNF131P52739 623 aa15.86■□□□□ 0.13
VRK3-213ENST00000597215 NFX1Q12986 1120 aaKnown RBP15.86■□□□□ 0.13
VRK3-213ENST00000597215 PCBP1Q15365 356 aaKnown RBP eCLIP15.86■□□□□ 0.13
VRK3-213ENST00000597215 CDCA2Q69YH5 1023 aaPredicted RBP15.86■□□□□ 0.13
VRK3-213ENST00000597215 ZNF365Q70YC5 407 aa15.86■□□□□ 0.13
VRK3-213ENST00000597215 C16orf59Q7L2K0 433 aa15.86■□□□□ 0.13
VRK3-213ENST00000597215 CNNM3Q8NE01 707 aa15.86■□□□□ 0.13
VRK3-213ENST00000597215 DNAJC19Q96DA6 116 aa15.86■□□□□ 0.13
VRK3-213ENST00000597215 FTHL17Q9BXU8 183 aa15.86■□□□□ 0.13
VRK3-213ENST00000597215 TRIM9Q9C026 710 aa15.86■□□□□ 0.13
VRK3-213ENST00000597215 ZHX3Q9H4I2 956 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms