RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 ZNF174Q15697 407 aa19.78■□□□□ 0.76
SHKBP1-204ENST00000594862 CSPP1Q1MSJ5 1256 aa19.78■□□□□ 0.76
SHKBP1-204ENST00000594862 NLRP4Q96MN2 994 aa19.78■□□□□ 0.76
SHKBP1-204ENST00000594862 FDXACB1Q9BRP7 624 aaPredicted RBP19.78■□□□□ 0.76
SHKBP1-204ENST00000594862 POLR3CQ9BUI4 534 aaPredicted RBP19.78■□□□□ 0.76
SHKBP1-204ENST00000594862 SMC3Q9UQE7 1217 aa19.78■□□□□ 0.76
SHKBP1-204ENST00000594862 MRPL42Q9Y6G3 142 aaKnown RBP19.78■□□□□ 0.76
SHKBP1-204ENST00000594862 PRRC2BQ5JSZ5 2229 aaKnown RBP19.78■□□□□ 0.76
SHKBP1-204ENST00000594862 EOMESO95936 686 aa19.77■□□□□ 0.76
SHKBP1-204ENST00000594862 LINC00271P0C7V0 271 aa19.77■□□□□ 0.76
SHKBP1-204ENST00000594862 RAB27AP51159 221 aa19.77■□□□□ 0.76
SHKBP1-204ENST00000594862 TFDP1Q14186 410 aa19.77■□□□□ 0.76
SHKBP1-204ENST00000594862 RILPL1Q5EBL4 403 aa19.77■□□□□ 0.76
SHKBP1-204ENST00000594862 SRGAP1Q7Z6B7 1085 aa19.77■□□□□ 0.76
SHKBP1-204ENST00000594862 ABI1Q8IZP0 508 aa19.77■□□□□ 0.76
SHKBP1-204ENST00000594862 PRPF31Q8WWY3 499 aaKnown RBP19.77■□□□□ 0.76
SHKBP1-204ENST00000594862 TRAIPQ9BWF2 469 aa19.77■□□□□ 0.76
SHKBP1-204ENST00000594862 TMEM117Q9H0C3 514 aa19.77■□□□□ 0.76
SHKBP1-204ENST00000594862 A0A0U1RQF3 1178 aa19.76■□□□□ 0.75
SHKBP1-204ENST00000594862 GJB2P29033 226 aa19.76■□□□□ 0.75
SHKBP1-204ENST00000594862 PHKA2P46019 1235 aa19.76■□□□□ 0.75
SHKBP1-204ENST00000594862 FXR2P51116 673 aaKnown RBP eCLIP19.76■□□□□ 0.75
SHKBP1-204ENST00000594862 PAN2Q504Q3 1202 aaKnown RBP19.76■□□□□ 0.75
SHKBP1-204ENST00000594862 CATSPER4Q7RTX7 472 aa19.76■□□□□ 0.75
SHKBP1-204ENST00000594862 HLA-CQ95604 372 aa19.76■□□□□ 0.75
SHKBP1-204ENST00000594862 ZNF668Q96K58 619 aaPredicted RBP19.76■□□□□ 0.75
SHKBP1-204ENST00000594862 ASB2Q96Q27 587 aa19.76■□□□□ 0.75
SHKBP1-204ENST00000594862 NACC1Q96RE7 527 aa19.76■□□□□ 0.75
SHKBP1-204ENST00000594862 BACH2Q9BYV9 841 aa19.76■□□□□ 0.75
SHKBP1-204ENST00000594862 DBR1Q9UK59 544 aaKnown RBP19.76■□□□□ 0.75
SHKBP1-204ENST00000594862 PCDHB12Q9Y5F1 795 aa19.76■□□□□ 0.75
SHKBP1-204ENST00000594862 XIRP2A4UGR9 3374 aa19.76■□□□□ 0.75
SHKBP1-204ENST00000594862 KIAA1671Q9BY89 1806 aa19.76■□□□□ 0.75
SHKBP1-204ENST00000594862 FNDC1Q4ZHG4 1894 aaPredicted RBP19.75■□□□□ 0.75
SHKBP1-204ENST00000594862 CARNS1A5YM72 827 aa19.75■□□□□ 0.75
SHKBP1-204ENST00000594862 TBKBP1A7MCY6 615 aa19.75■□□□□ 0.75
SHKBP1-204ENST00000594862 RBAK-RBAKDNI3L0D1 243 aa19.75■□□□□ 0.75
SHKBP1-204ENST00000594862 CD2BP2O95400 341 aaKnown RBP19.75■□□□□ 0.75
SHKBP1-204ENST00000594862 IBSPP21815 317 aaPredicted RBP19.75■□□□□ 0.75
SHKBP1-204ENST00000594862 RPA1P27694 616 aa19.75■□□□□ 0.75
SHKBP1-204ENST00000594862 PRPHP41219 470 aa19.75■□□□□ 0.75
SHKBP1-204ENST00000594862 TECP42680 631 aa19.75■□□□□ 0.75
SHKBP1-204ENST00000594862 RARRES1P49788 294 aa19.75■□□□□ 0.75
SHKBP1-204ENST00000594862 POU5F1BQ06416 359 aa19.75■□□□□ 0.75
SHKBP1-204ENST00000594862 LAMTOR4Q0VGL1 99 aa19.75■□□□□ 0.75
SHKBP1-204ENST00000594862 MCTP1Q6DN14 999 aa19.75■□□□□ 0.75
SHKBP1-204ENST00000594862 FERMT3Q86UX7 667 aa19.75■□□□□ 0.75
SHKBP1-204ENST00000594862 ECHDC2Q86YB7 292 aa19.75■□□□□ 0.75
SHKBP1-204ENST00000594862 LRRC43Q8N309 656 aa19.75■□□□□ 0.75
SHKBP1-204ENST00000594862 ZNF579Q8NAF0 562 aaKnown RBP19.75■□□□□ 0.75
SHKBP1-204ENST00000594862 MCPH1Q8NEM0 835 aa19.75■□□□□ 0.75
SHKBP1-204ENST00000594862 TMEM143Q96AN5 459 aa19.75■□□□□ 0.75
SHKBP1-204ENST00000594862 MRPL9Q9BYD2 267 aaKnown RBP19.75■□□□□ 0.75
SHKBP1-204ENST00000594862 NSUN3Q9H649 340 aaKnown RBP19.75■□□□□ 0.75
SHKBP1-204ENST00000594862 NCK2O43639 380 aa19.74■□□□□ 0.75
SHKBP1-204ENST00000594862 LAG3P18627 525 aa19.74■□□□□ 0.75
SHKBP1-204ENST00000594862 PDIA5Q14554 519 aa19.74■□□□□ 0.75
SHKBP1-204ENST00000594862 SPOUT1Q5T280 376 aaKnown RBP19.74■□□□□ 0.75
SHKBP1-204ENST00000594862 TWF2Q6IBS0 349 aaKnown RBP19.74■□□□□ 0.75
SHKBP1-204ENST00000594862 CATSPER3Q86XQ3 398 aa19.74■□□□□ 0.75
SHKBP1-204ENST00000594862 PPP2R3CQ969Q6 453 aa19.74■□□□□ 0.75
SHKBP1-204ENST00000594862 IFT122Q9HBG6 1241 aa19.74■□□□□ 0.75
SHKBP1-204ENST00000594862 AGPAT5Q9NUQ2 364 aa19.74■□□□□ 0.75
SHKBP1-204ENST00000594862 PIN4Q9Y237 131 aaKnown RBP19.74■□□□□ 0.75
SHKBP1-204ENST00000594862 BDP1A6H8Y1 2624 aa19.74■□□□□ 0.75
SHKBP1-204ENST00000594862 SRGAP2CP0DJJ0 459 aa19.73■□□□□ 0.75
SHKBP1-204ENST00000594862 SPATA31C1P0DKV0 1188 aa19.73■□□□□ 0.75
SHKBP1-204ENST00000594862 UBE3AQ05086 875 aa19.73■□□□□ 0.75
SHKBP1-204ENST00000594862 NCBP1Q09161 790 aaKnown RBP19.73■□□□□ 0.75
SHKBP1-204ENST00000594862 KSR1Q8IVT5 923 aa19.73■□□□□ 0.75
SHKBP1-204ENST00000594862 RNF149Q8NC42 400 aa19.73■□□□□ 0.75
SHKBP1-204ENST00000594862 XPNPEP1Q9NQW7 623 aa19.73■□□□□ 0.75
SHKBP1-204ENST00000594862 LRWD1Q9UFC0 647 aa19.73■□□□□ 0.75
SHKBP1-204ENST00000594862 ZBTB39O15060 712 aa19.72■□□□□ 0.75
SHKBP1-204ENST00000594862 ERLIN2O94905 339 aa19.72■□□□□ 0.75
SHKBP1-204ENST00000594862 PDCP20941 246 aa19.72■□□□□ 0.75
SHKBP1-204ENST00000594862 FGFR4P22455 802 aa19.72■□□□□ 0.75
SHKBP1-204ENST00000594862 PPM1AP35813 382 aa19.72■□□□□ 0.75
SHKBP1-204ENST00000594862 GATMP50440 423 aa19.72■□□□□ 0.75
SHKBP1-204ENST00000594862 TOB1P50616 345 aaPredicted RBP19.72■□□□□ 0.75
SHKBP1-204ENST00000594862 PTGDRQ13258 359 aa19.72■□□□□ 0.75
SHKBP1-204ENST00000594862 FAM102BQ5T8I3 360 aa19.72■□□□□ 0.75
SHKBP1-204ENST00000594862 IFNLR1Q8IU57 520 aaPredicted RBP19.72■□□□□ 0.75
SHKBP1-204ENST00000594862 C4orf32Q8N8J7 132 aa19.72■□□□□ 0.75
SHKBP1-204ENST00000594862 PIGOQ8TEQ8 1089 aa19.72■□□□□ 0.75
SHKBP1-204ENST00000594862 PGBD4Q96DM1 585 aa19.72■□□□□ 0.75
SHKBP1-204ENST00000594862 CCDC51Q96ER9 411 aa19.72■□□□□ 0.75
SHKBP1-204ENST00000594862 NFKBIZQ9BYH8 718 aa19.72■□□□□ 0.75
SHKBP1-204ENST00000594862 BMP2KQ9NSY1 1161 aaPredicted RBP19.72■□□□□ 0.75
SHKBP1-204ENST00000594862 PLAGL2Q9UPG8 496 aa19.72■□□□□ 0.75
SHKBP1-204ENST00000594862 ARHGEF35A5YM69 484 aa19.71■□□□□ 0.75
SHKBP1-204ENST00000594862 ZNF623O75123 536 aa19.71■□□□□ 0.75
SHKBP1-204ENST00000594862 MED24O75448 989 aa19.71■□□□□ 0.75
SHKBP1-204ENST00000594862 CSDE1O75534 798 aaKnown RBP19.71■□□□□ 0.75
SHKBP1-204ENST00000594862 FGFR1P11362 822 aa19.71■□□□□ 0.75
SHKBP1-204ENST00000594862 AXLP30530 894 aa19.71■□□□□ 0.75
SHKBP1-204ENST00000594862 CCT6AP40227 531 aaKnown RBP19.71■□□□□ 0.75
SHKBP1-204ENST00000594862 PTENP60484 403 aa19.71■□□□□ 0.75
SHKBP1-204ENST00000594862 CUL4AQ13619 759 aa19.71■□□□□ 0.75
SHKBP1-204ENST00000594862 LARP1BQ659C4 914 aaKnown RBP19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms