RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 HSPA1LP34931 641 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 ZNF211Q13398 564 aaPredicted RBP13.18□□□□□ -0.3
LIG1-207ENST00000594759 THOC5Q13769 683 aaKnown RBP13.18□□□□□ -0.3
LIG1-207ENST00000594759 TMTC3Q6ZXV5 915 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 TMC3Q7Z5M5 1100 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 EPS8L3Q8TE67 593 aaKnown RBP13.18□□□□□ -0.3
LIG1-207ENST00000594759 SDR42E1Q8WUS8 393 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 KAZALD1Q96I82 304 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 L3MBTL3Q96JM7 780 aaPredicted RBP13.18□□□□□ -0.3
LIG1-207ENST00000594759 FNBP1Q96RU3 617 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 GPR108Q9NPR9 543 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 CEP72Q9P209 647 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 STK36Q9NRP7 1315 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 ANKRD33BA6NCL7 494 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 RPS8P62241 208 aaKnown RBP13.18□□□□□ -0.3
LIG1-207ENST00000594759 ADAM9Q13443 819 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 WDR59Q6PJI9 974 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 C17orf50Q8WW18 174 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 MAML3Q96JK9 1138 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 PIDD1Q9HB75 910 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 SAP30BPQ9UHR5 308 aaKnown RBP13.18□□□□□ -0.3
LIG1-207ENST00000594759 LZTS1Q9Y250 596 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 EXOC1LA0A1B0GW35 172 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 A0A1W2PQJ5 194 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 ENTPD5O75356 428 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 RPL13P26373 211 aaKnown RBP13.18□□□□□ -0.3
LIG1-207ENST00000594759 TECP42680 631 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 PHEXP78562 749 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 DSG1Q02413 1049 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 MPP3Q13368 585 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 ANO7Q6IWH7 933 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 BLIDQ8IZY5 108 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 ERP44Q9BS26 406 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 SIGLEC1Q9BZZ2 1709 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 TNS3Q68CZ2 1445 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 FAM237AA0A1B0GTK4 181 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 PP2D1A8MPX8 630 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 UNC5CO95185 931 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 GNAQP50148 359 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 SLC18A3Q16572 532 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 C16orf87Q6PH81 154 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.17□□□□□ -0.3
LIG1-207ENST00000594759 USP6NLQ92738 828 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 GPKOWQ92917 476 aaPredicted RBP eCLIP13.17□□□□□ -0.31e-9■■■■■ 32.6
LIG1-207ENST00000594759 ZC3H12CQ9C0D7 883 aaKnown RBP13.17□□□□□ -0.3
LIG1-207ENST00000594759 SUCLA2Q9P2R7 463 aaPredicted RBP13.17□□□□□ -0.3
LIG1-207ENST00000594759 ABCC12Q96J65 1359 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 TSPY3P0CV98 308 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 TSPY8P0CW00 308 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 IL6STP40189 918 aaPredicted RBP13.17□□□□□ -0.3
LIG1-207ENST00000594759 BTKQ06187 659 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 SLC34A1Q06495 639 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 DNAJC3Q13217 504 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 MEA1Q16626 185 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 LRRC74BQ6ZQY2 392 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 RGS9BPQ6ZS82 235 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 CASP10Q92851 521 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 ANLNQ9NQW6 1124 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 ANAPC5Q9UJX4 755 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 COL4A3BPQ9Y5P4 624 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 AFF2P51816 1311 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 LDHBP07195 334 aaKnown RBP13.17□□□□□ -0.3
LIG1-207ENST00000594759 CDK17Q00537 523 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 EXOC3L4Q17RC7 722 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 IZUMO2Q6UXV1 221 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 ICA1LQ8NDH6 482 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 ANKRD2Q9GZV1 360 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 ZNF287Q9HBT7 754 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 ITGB1BP2Q9UKP3 347 aa13.17□□□□□ -0.3
LIG1-207ENST00000594759 DYTNA2CJ06 578 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 C5orf60A6NFR6 353 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 SCG2P13521 617 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 PLCG2P16885 1265 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 ADD2P35612 726 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 PSMD6Q15008 389 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 TMEM259Q4ZIN3 620 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 ERGIC2Q96RQ1 377 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 SYT15Q9BQS2 421 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 UBN1Q9NPG3 1134 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 SLC12A6Q9UHW9 1150 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 PXDNLA1KZ92 1463 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 USP32Q8NFA0 1604 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 WDR19Q8NEZ3 1342 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 UFL1O94874 794 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 USP11P51784 963 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 CHRNDQ07001 517 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 MTA1Q13330 715 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 DHX34Q14147 1143 aaKnown RBP13.16□□□□□ -0.3
LIG1-207ENST00000594759 MESDQ14696 234 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 SUSD4Q5VX71 490 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 ZNF662Q6ZS27 426 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 CCNJLQ8IV13 435 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 EDEM3Q9BZQ6 932 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 MAGEF1Q9HAY2 307 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 C6orf50Q9HD87 102 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 UTP6Q9NYH9 597 aaKnown RBP13.16□□□□□ -0.3
LIG1-207ENST00000594759 SRP68Q9UHB9 627 aaKnown RBP13.16□□□□□ -0.3
LIG1-207ENST00000594759 SH3GLB1Q9Y371 365 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.16□□□□□ -0.3
LIG1-207ENST00000594759 CPDO75976 1380 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms