RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 KCNK18Q7Z418 384 aa16.18■□□□□ 0.18
VRK3-206ENST00000594090 CABP7Q86V35 215 aa16.18■□□□□ 0.18
VRK3-206ENST00000594090 CRIPAKQ8N1N5 446 aa16.18■□□□□ 0.18
VRK3-206ENST00000594090 SP7Q8TDD2 431 aaPredicted RBP16.18■□□□□ 0.18
VRK3-206ENST00000594090 ASAP3Q8TDY4 903 aa16.18■□□□□ 0.18
VRK3-206ENST00000594090 FOXD4L4Q8WXT5 416 aaPredicted RBP16.18■□□□□ 0.18
VRK3-206ENST00000594090 PNMA5Q96PV4 448 aa16.18■□□□□ 0.18
VRK3-206ENST00000594090 NT5C3AQ9H0P0 336 aa16.18■□□□□ 0.18
VRK3-206ENST00000594090 GPRC5CQ9NQ84 441 aa16.18■□□□□ 0.18
VRK3-206ENST00000594090 C1orf112Q9NSG2 853 aa16.18■□□□□ 0.18
VRK3-206ENST00000594090 FBXO2Q9UK22 296 aaPredicted RBP16.18■□□□□ 0.18
VRK3-206ENST00000594090 DNM3Q9UQ16 869 aa16.18■□□□□ 0.18
VRK3-206ENST00000594090 MORC2Q9Y6X9 1032 aaPredicted RBP16.18■□□□□ 0.18
VRK3-206ENST00000594090 C9IYK1 514 aa16.17■□□□□ 0.18
VRK3-206ENST00000594090 E9PMD0 336 aa16.17■□□□□ 0.18
VRK3-206ENST00000594090 SLC26A4O43511 780 aa16.17■□□□□ 0.18
VRK3-206ENST00000594090 F13A1P00488 732 aa16.17■□□□□ 0.18
VRK3-206ENST00000594090 ZSCAN20P17040 1043 aaPredicted RBP16.17■□□□□ 0.18
VRK3-206ENST00000594090 MARCKSP29966 332 aaPredicted RBP16.17■□□□□ 0.18
VRK3-206ENST00000594090 PHKA2P46019 1235 aa16.17■□□□□ 0.18
VRK3-206ENST00000594090 GRB10Q13322 594 aa16.17■□□□□ 0.18
VRK3-206ENST00000594090 TFDP1Q14186 410 aa16.17■□□□□ 0.18
VRK3-206ENST00000594090 ZRSR1Q15695 479 aaKnown RBP16.17■□□□□ 0.18
VRK3-206ENST00000594090 TMEM119Q4V9L6 283 aa16.17■□□□□ 0.18
VRK3-206ENST00000594090 FAM102BQ5T8I3 360 aa16.17■□□□□ 0.18
VRK3-206ENST00000594090 SLC24A5Q71RS6 500 aa16.17■□□□□ 0.18
VRK3-206ENST00000594090 SRGAP1Q7Z6B7 1085 aa16.17■□□□□ 0.18
VRK3-206ENST00000594090 CDK5RAP3Q96JB5 506 aa16.17■□□□□ 0.18
VRK3-206ENST00000594090 CDX2Q99626 313 aaPredicted RBP16.17■□□□□ 0.18
VRK3-206ENST00000594090 MINDY3Q9H8M7 445 aa16.17■□□□□ 0.18
VRK3-206ENST00000594090 RC3H2Q9HBD1 1191 aaKnown RBP16.17■□□□□ 0.18
VRK3-206ENST00000594090 COL4A4P53420 1690 aaPredicted RBP16.16■□□□□ 0.18
VRK3-206ENST00000594090 CHD9Q3L8U1 2897 aa16.16■□□□□ 0.18
VRK3-206ENST00000594090 LINC01553A4QN01 128 aa16.16■□□□□ 0.18
VRK3-206ENST00000594090 STAG3L1P0CL83 205 aa16.16■□□□□ 0.18
VRK3-206ENST00000594090 UBA7P41226 1012 aa16.16■□□□□ 0.18
VRK3-206ENST00000594090 NASPP49321 788 aaPredicted RBP16.16■□□□□ 0.18
VRK3-206ENST00000594090 PTENP60484 403 aa16.16■□□□□ 0.18
VRK3-206ENST00000594090 BECN1Q14457 450 aa16.16■□□□□ 0.18
VRK3-206ENST00000594090 CATSPER4Q7RTX7 472 aa16.16■□□□□ 0.18
VRK3-206ENST00000594090 SPRED2Q7Z698 418 aa16.16■□□□□ 0.18
VRK3-206ENST00000594090 IFNLR1Q8IU57 520 aaPredicted RBP16.16■□□□□ 0.18
VRK3-206ENST00000594090 KCTD17Q8N5Z5 321 aa16.16■□□□□ 0.18
VRK3-206ENST00000594090 MYLIPQ8WY64 445 aa16.16■□□□□ 0.18
VRK3-206ENST00000594090 LRFN2Q9ULH4 789 aa16.16■□□□□ 0.18
VRK3-206ENST00000594090 SRPRBQ9Y5M8 271 aaKnown RBP16.16■□□□□ 0.18
VRK3-206ENST00000594090 CHD7Q9P2D1 2997 aa16.16■□□□□ 0.18
VRK3-206ENST00000594090 ADGRA3Q8IWK6 1321 aa16.15■□□□□ 0.18
VRK3-206ENST00000594090 DGKIO75912 1065 aa16.15■□□□□ 0.18
VRK3-206ENST00000594090 IBSPP21815 317 aaPredicted RBP16.15■□□□□ 0.18
VRK3-206ENST00000594090 POU5F1BQ06416 359 aa16.15■□□□□ 0.18
VRK3-206ENST00000594090 SLC39A14Q15043 492 aa16.15■□□□□ 0.18
VRK3-206ENST00000594090 ZNF689Q96CS4 500 aaPredicted RBP16.15■□□□□ 0.18
VRK3-206ENST00000594090 CALML4Q96GE6 196 aa16.15■□□□□ 0.18
VRK3-206ENST00000594090 ZNF396Q96N95 335 aaPredicted RBP16.15■□□□□ 0.18
VRK3-206ENST00000594090 PLIN2Q99541 437 aa16.15■□□□□ 0.18
VRK3-206ENST00000594090 NFKBIZQ9BYH8 718 aa16.15■□□□□ 0.18
VRK3-206ENST00000594090 CSRNP2Q9H175 543 aa16.15■□□□□ 0.18
VRK3-206ENST00000594090 PRDM12Q9H4Q4 367 aa16.15■□□□□ 0.18
VRK3-206ENST00000594090 CERS4Q9HA82 394 aa16.15■□□□□ 0.18
VRK3-206ENST00000594090 AGPAT5Q9NUQ2 364 aa16.15■□□□□ 0.18
VRK3-206ENST00000594090 RNF216Q9NWF9 866 aaPredicted RBP16.15■□□□□ 0.18
VRK3-206ENST00000594090 PIN4Q9Y237 131 aaKnown RBP16.15■□□□□ 0.18
VRK3-206ENST00000594090 PCDHB7Q9Y5E2 793 aa16.15■□□□□ 0.18
VRK3-206ENST00000594090 LRRIQ4A6NIV6 560 aa16.14■□□□□ 0.17
VRK3-206ENST00000594090 FAM189BP81408 668 aa16.14■□□□□ 0.17
VRK3-206ENST00000594090 SPECC1Q5M775 1068 aa16.14■□□□□ 0.17
VRK3-206ENST00000594090 TGS1Q96RS0 853 aaKnown RBP16.14■□□□□ 0.17
VRK3-206ENST00000594090 RUSC1Q9BVN2 902 aa16.14■□□□□ 0.17
VRK3-206ENST00000594090 CCSER1Q9C0I3 900 aa16.14■□□□□ 0.17
VRK3-206ENST00000594090 ELAC1Q9H777 363 aaKnown RBP16.14■□□□□ 0.17
VRK3-206ENST00000594090 CHST12Q9NRB3 414 aa16.14■□□□□ 0.17
VRK3-206ENST00000594090 TMEM161AQ9NX61 479 aa16.14■□□□□ 0.17
VRK3-206ENST00000594090 DACT1Q9NYF0 836 aa16.14■□□□□ 0.17
VRK3-206ENST00000594090 STXBP5LQ9Y2K9 1186 aa16.14■□□□□ 0.17
VRK3-206ENST00000594090 RALGAPA2Q2PPJ7 1873 aa16.14■□□□□ 0.17
VRK3-206ENST00000594090 NLRC5Q86WI3 1866 aa16.14■□□□□ 0.17
VRK3-206ENST00000594090 EPOPA6NHQ4 379 aa16.13■□□□□ 0.17
VRK3-206ENST00000594090 ERLIN2O94905 339 aa16.13■□□□□ 0.17
VRK3-206ENST00000594090 ERVK-21P61565 698 aa16.13■□□□□ 0.17
VRK3-206ENST00000594090 MBTD1Q05BQ5 628 aa16.13■□□□□ 0.17
VRK3-206ENST00000594090 KARSQ15046 597 aaKnown RBP16.13■□□□□ 0.17
VRK3-206ENST00000594090 STK38Q15208 465 aa16.13■□□□□ 0.17
VRK3-206ENST00000594090 PCBP1Q15365 356 aaKnown RBP eCLIP16.13■□□□□ 0.17
VRK3-206ENST00000594090 FOXD4L6Q3SYB3 417 aaPredicted RBP16.13■□□□□ 0.17
VRK3-206ENST00000594090 RINT1Q6NUQ1 792 aa16.13■□□□□ 0.17
VRK3-206ENST00000594090 FOXD4L3Q6VB84 417 aaPredicted RBP16.13■□□□□ 0.17
VRK3-206ENST00000594090 ECHDC2Q86YB7 292 aa16.13■□□□□ 0.17
VRK3-206ENST00000594090 SYT2Q8N9I0 419 aaPredicted RBP16.13■□□□□ 0.17
VRK3-206ENST00000594090 LINC00301Q8NCQ3 95 aa16.13■□□□□ 0.17
VRK3-206ENST00000594090 ARNTL2Q8WYA1 636 aa16.13■□□□□ 0.17
VRK3-206ENST00000594090 BSNDQ8WZ55 320 aa16.13■□□□□ 0.17
VRK3-206ENST00000594090 KIFAP3Q92845 792 aa16.13■□□□□ 0.17
VRK3-206ENST00000594090 CLIC6Q96NY7 704 aa16.13■□□□□ 0.17
VRK3-206ENST00000594090 TFIP11Q9UBB9 837 aaKnown RBP16.13■□□□□ 0.17
VRK3-206ENST00000594090 A0A0U1RQF3 1178 aa16.12■□□□□ 0.17
VRK3-206ENST00000594090 INO80B-WBP1J3KQ70 363 aa16.12■□□□□ 0.17
VRK3-206ENST00000594090 YEATS4O95619 227 aa16.12■□□□□ 0.17
VRK3-206ENST00000594090 BRD1O95696 1058 aa16.12■□□□□ 0.17
VRK3-206ENST00000594090 PLA2G4BP0C869 781 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 114.3 ms