RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 LRRN2O75325 713 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 SCP2P22307 547 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 AP3M2P53677 418 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 PAK2Q13177 524 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 GLB1LQ6UWU2 654 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 SYCE1Q8N0S2 351 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 NSMCE1Q8WV22 266 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 SAAL1Q96ER3 474 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 KIF12Q96FN5 646 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 MRFAP1L1Q96HT8 127 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 PPP1R9BQ96SB3 815 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 C7orf25Q9BPX7 421 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 ROBO3Q96MS0 1386 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 MNAT1P51948 309 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 TSPY1Q01534 308 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 LY6KQ17RY6 165 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 ZNF699Q32M78 642 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 SECISBP2LQ93073 1101 aaKnown RBP10.64□□□□□ -0.71
LIG3-216ENST00000593099 C17orf75Q9HAS0 396 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 ATP11BQ9Y2G3 1177 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 DUOXA2Q1HG44 320 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 LBX2Q6XYB7 198 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 PPP2R3CQ969Q6 453 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 GCNAQ96QF7 691 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 FAM217BQ9NTX9 383 aaPredicted RBP10.64□□□□□ -0.71
LIG3-216ENST00000593099 ZKSCAN5Q9Y2L8 839 aa10.64□□□□□ -0.71
LIG3-216ENST00000593099 PDXKO00764 312 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 EGFRP00533 1210 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 PRR29P0C7W0 189 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 GCLMP48507 274 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 VAMP7P51809 220 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 RNASE9P60153 205 aaKnown RBP10.63□□□□□ -0.71
LIG3-216ENST00000593099 VSIG10LQ86VR7 867 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 DPF3Q92784 378 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 HEXIM2Q96MH2 286 aaKnown RBP10.63□□□□□ -0.71
LIG3-216ENST00000593099 ZNF560Q96MR9 790 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 NPHP3-ACAD11A0A0J9YXS1 232 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 ATP2A1O14983 1001 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 TRAPPC3O43617 180 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 RNF8O76064 485 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 KLRC1P26715 233 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 ADCYAP1R1P41586 468 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 FLT3LGP49771 235 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 IFFO1Q0D2I5 559 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 DGKZQ13574 1117 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 NOLC1Q14978 699 aaKnown RBP eCLIP10.63□□□□□ -0.71
LIG3-216ENST00000593099 FSCN1Q16658 493 aaKnown RBP10.63□□□□□ -0.71
LIG3-216ENST00000593099 HADHQ16836 314 aaKnown RBP10.63□□□□□ -0.71
LIG3-216ENST00000593099 SCYL2Q6P3W7 929 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 ATP8B4Q8TF62 1192 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 HAUS2Q9NVX0 235 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 PAXBP1Q9Y5B6 917 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 IGSF9BQ9UPX0 1349 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 UPP2O95045 317 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 KCNA3P22001 575 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 HS1BP3Q53T59 392 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 USP49Q70CQ1 688 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 CEP57Q86XR8 500 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 TTC39CQ8N584 583 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 CCDC113Q9H0I3 377 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 PKD1L3Q7Z443 1732 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 ATRNL1Q5VV63 1379 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 MYMKA6NI61 221 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 CA12O43570 354 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 ITGA4P13612 1032 aa10.63□□□□□ -0.71
LIG3-216ENST00000593099 CABYRO75952 493 aa10.62□□□□□ -0.71
LIG3-216ENST00000593099 STK10O94804 968 aaKnown RBP10.62□□□□□ -0.71
LIG3-216ENST00000593099 SHROOM1Q2M3G4 852 aaPredicted RBP10.62□□□□□ -0.71
LIG3-216ENST00000593099 NOTUMQ6P988 496 aa10.62□□□□□ -0.71
LIG3-216ENST00000593099 C4orf19Q8IY42 314 aa10.62□□□□□ -0.71
LIG3-216ENST00000593099 SYT2Q8N9I0 419 aaPredicted RBP10.62□□□□□ -0.71
LIG3-216ENST00000593099 TRIM11Q96F44 468 aa10.62□□□□□ -0.71
LIG3-216ENST00000593099 L3MBTL3Q96JM7 780 aaPredicted RBP10.62□□□□□ -0.71
LIG3-216ENST00000593099 GPR182O15218 404 aa10.62□□□□□ -0.71
LIG3-216ENST00000593099 STAG3L1P0CL83 205 aa10.62□□□□□ -0.71
LIG3-216ENST00000593099 SKIP12755 728 aa10.62□□□□□ -0.71
LIG3-216ENST00000593099 FSTL1Q12841 308 aa10.62□□□□□ -0.71
LIG3-216ENST00000593099 TCP11X2Q5H9J9 407 aa10.62□□□□□ -0.71
LIG3-216ENST00000593099 ATF7IP2Q5U623 682 aa10.62□□□□□ -0.71
LIG3-216ENST00000593099 FAM117BQ6P1L5 589 aa10.62□□□□□ -0.71
LIG3-216ENST00000593099 PEX26Q7Z412 305 aa10.62□□□□□ -0.71
LIG3-216ENST00000593099 TAX1BP1Q86VP1 789 aa10.62□□□□□ -0.71
LIG3-216ENST00000593099 RNF168Q8IYW5 571 aaPredicted RBP10.62□□□□□ -0.71
LIG3-216ENST00000593099 SIX6OS1Q8N1H7 587 aa10.62□□□□□ -0.71
LIG3-216ENST00000593099 HVCN1Q96D96 273 aa10.62□□□□□ -0.71
LIG3-216ENST00000593099 COMMD10Q9Y6G5 202 aa10.62□□□□□ -0.71
LIG3-216ENST00000593099 GOLGA6L7A0A1B0GV03 622 aa10.62□□□□□ -0.71
LIG3-216ENST00000593099 CLCN3P51790 818 aa10.62□□□□□ -0.71
LIG3-216ENST00000593099 ZRSR2Q15696 482 aaKnown RBP10.62□□□□□ -0.71
LIG3-216ENST00000593099 KRT39Q6A163 491 aa10.62□□□□□ -0.71
LIG3-216ENST00000593099 ZNF384Q8TF68 577 aa10.62□□□□□ -0.71
LIG3-216ENST00000593099 A0A0G2JLL6 359 aaPredicted RBP10.61□□□□□ -0.71
LIG3-216ENST00000593099 TRIM49BA6NDI0 452 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 PRRT2Q7Z6L0 340 aaPredicted RBP10.61□□□□□ -0.71
LIG3-216ENST00000593099 ZNF710Q8N1W2 664 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 PIK3CDO00329 1044 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 CYP3A4P08684 503 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 ZNF286BP0CG31 522 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 INSRRP14616 1297 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 RAG1P15918 1043 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms