RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 BHMT2Q9H2M3 363 aa16.09■□□□□ 0.17
SMARCA4-219ENST00000592604 BCAS3Q9H6U6 928 aa16.09■□□□□ 0.17
SMARCA4-219ENST00000592604 ERVK-5Q9HDB9 667 aa16.09■□□□□ 0.17
SMARCA4-219ENST00000592604 ZMYM2Q9UBW7 1377 aa16.09■□□□□ 0.17
SMARCA4-219ENST00000592604 CCDC169A6NNP5 214 aa16.08■□□□□ 0.17
SMARCA4-219ENST00000592604 CIITAP33076 1130 aa16.08■□□□□ 0.17
SMARCA4-219ENST00000592604 FMO5P49326 533 aa16.08■□□□□ 0.17
SMARCA4-219ENST00000592604 HADHBP55084 474 aaKnown RBP16.08■□□□□ 0.17
SMARCA4-219ENST00000592604 NEK9Q8TD19 979 aa16.08■□□□□ 0.17
SMARCA4-219ENST00000592604 CCDC17Q96LX7 622 aa16.08■□□□□ 0.17
SMARCA4-219ENST00000592604 CCNL1Q9UK58 526 aaPredicted RBP16.08■□□□□ 0.17
SMARCA4-219ENST00000592604 VAV3Q9UKW4 847 aa16.08■□□□□ 0.17
SMARCA4-219ENST00000592604 SPDYE3A6NKU9 549 aa16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 FAM86B1E9PN63 330 aa16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 KIAA0391O15091 583 aaKnown RBP16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 PPIP5K2O43314 1243 aa16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 PPP1R12BO60237 982 aaPredicted RBP16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 CTNND1O60716 968 aaKnown RBP16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 SHBGP04278 402 aa16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 FAM86B2P0C5J1 330 aa16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 SREBF1P36956 1147 aa16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 GTF2IP78347 998 aa16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 ZDHHC24Q6UX98 284 aa16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 FAM228AQ86W67 206 aa16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 JAMLQ86YT9 394 aa16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 DCAF4Q8WV16 495 aa16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 HVCN1Q96D96 273 aa16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 HAUS2Q9NVX0 235 aa16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 CNOT7Q9UIV1 285 aaKnown RBP16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 BTAF1O14981 1849 aa16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 ANKRD62A6NC57 917 aa16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 MPHOSPH10O00566 681 aaKnown RBP16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 ASAP2O43150 1006 aa16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 C21orf2O43822 256 aa16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 BBOX1O75936 387 aa16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 FOSP01100 380 aaPredicted RBP16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 VCAM1P19320 739 aa16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 MAPK7Q13164 816 aa16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 PRPF4BQ13523 1007 aaKnown RBP16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 RINT1Q6NUQ1 792 aa16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 GLG1Q92896 1179 aa16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 RNF25Q96BH1 459 aaPredicted RBP16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 ARHGEF26Q96DR7 871 aa16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 ADAM7Q9H2U9 754 aa16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 RABGAP1Q9Y3P9 1069 aa16.08■□□□□ 0.16
SMARCA4-219ENST00000592604 CCT8L1PA6NM43 557 aa16.07■□□□□ 0.16
SMARCA4-219ENST00000592604 MSH4O15457 936 aa16.07■□□□□ 0.16
SMARCA4-219ENST00000592604 CHN1P15882 459 aa16.07■□□□□ 0.16
SMARCA4-219ENST00000592604 ABCB4P21439 1286 aa16.07■□□□□ 0.16
SMARCA4-219ENST00000592604 NEDD9Q14511 834 aa16.07■□□□□ 0.16
SMARCA4-219ENST00000592604 TRAPPC3LQ5T215 181 aa16.07■□□□□ 0.16
SMARCA4-219ENST00000592604 PIGWQ7Z7B1 504 aa16.07■□□□□ 0.16
SMARCA4-219ENST00000592604 CROCCP2Q86T23 111 aa16.07■□□□□ 0.16
SMARCA4-219ENST00000592604 CCDC197Q8NCU1 140 aa16.07■□□□□ 0.16
SMARCA4-219ENST00000592604 ATXN2LQ8WWM7 1075 aaKnown RBP16.07■□□□□ 0.16
SMARCA4-219ENST00000592604 TMEM109Q9BVC6 243 aa16.07■□□□□ 0.16
SMARCA4-219ENST00000592604 MCM8Q9UJA3 840 aa16.07■□□□□ 0.16
SMARCA4-219ENST00000592604 TAF1LQ8IZX4 1826 aa16.07■□□□□ 0.16
SMARCA4-219ENST00000592604 MGRN1O60291 552 aa16.07■□□□□ 0.16
SMARCA4-219ENST00000592604 TRIM37O94972 964 aa16.07■□□□□ 0.16
SMARCA4-219ENST00000592604 HSPA6P17066 643 aa16.07■□□□□ 0.16
SMARCA4-219ENST00000592604 PTGIRP43119 386 aa16.07■□□□□ 0.16
SMARCA4-219ENST00000592604 FAM98CQ17RN3 349 aaKnown RBP16.07■□□□□ 0.16
SMARCA4-219ENST00000592604 DENND2CQ68D51 928 aa16.07■□□□□ 0.16
SMARCA4-219ENST00000592604 ALG3Q92685 438 aa16.07■□□□□ 0.16
SMARCA4-219ENST00000592604 RBM17Q96I25 401 aaKnown RBP16.07■□□□□ 0.16
SMARCA4-219ENST00000592604 EIF2AK1Q9BQI3 630 aaKnown RBP16.07■□□□□ 0.16
SMARCA4-219ENST00000592604 USP40Q9NVE5 1235 aa16.07■□□□□ 0.16
SMARCA4-219ENST00000592604 RASAL2Q9UJF2 1139 aa16.07■□□□□ 0.16
SMARCA4-219ENST00000592604 TPX2Q9ULW0 747 aaKnown RBP16.07■□□□□ 0.16
SMARCA4-219ENST00000592604 QSER1Q2KHR3 1735 aa16.06■□□□□ 0.16
SMARCA4-219ENST00000592604 HLA-DOAP06340 250 aa16.06■□□□□ 0.16
SMARCA4-219ENST00000592604 TNFAIP3P21580 790 aa16.06■□□□□ 0.16
SMARCA4-219ENST00000592604 POLD1P28340 1107 aa16.06■□□□□ 0.16
SMARCA4-219ENST00000592604 GBP1P32455 592 aa16.06■□□□□ 0.16
SMARCA4-219ENST00000592604 PLTPP55058 493 aa16.06■□□□□ 0.16
SMARCA4-219ENST00000592604 ITIH4Q14624 930 aa16.06■□□□□ 0.16
SMARCA4-219ENST00000592604 TCEAL1Q15170 157 aa16.06■□□□□ 0.16
SMARCA4-219ENST00000592604 COL23A1Q86Y22 540 aaPredicted RBP16.06■□□□□ 0.16
SMARCA4-219ENST00000592604 FBXO25Q8TCJ0 367 aa16.06■□□□□ 0.16
SMARCA4-219ENST00000592604 THAP2Q9H0W7 228 aa16.06■□□□□ 0.16
SMARCA4-219ENST00000592604 CCDC134Q9H6E4 229 aa16.06■□□□□ 0.16
SMARCA4-219ENST00000592604 GRHL1Q9NZI5 618 aa16.06■□□□□ 0.16
SMARCA4-219ENST00000592604 COG5Q9UP83 839 aa16.06■□□□□ 0.16
SMARCA4-219ENST00000592604 CYP4A11Q02928 519 aa16.06■□□□□ 0.16
SMARCA4-219ENST00000592604 KIF22Q14807 665 aa16.06■□□□□ 0.16
SMARCA4-219ENST00000592604 RHOT2Q8IXI1 618 aa16.06■□□□□ 0.16
SMARCA4-219ENST00000592604 AMNQ9BXJ7 453 aa16.06■□□□□ 0.16
SMARCA4-219ENST00000592604 DMAC2Q9NW81 257 aa16.06■□□□□ 0.16
SMARCA4-219ENST00000592604 NYAP2Q9P242 653 aa16.06■□□□□ 0.16
SMARCA4-219ENST00000592604 APEX2Q9UBZ4 518 aa16.06■□□□□ 0.16
SMARCA4-219ENST00000592604 PCYOX1Q9UHG3 505 aa16.06■□□□□ 0.16
SMARCA4-219ENST00000592604 SNX24Q9Y343 169 aa16.06■□□□□ 0.16
SMARCA4-219ENST00000592604 PHF2O75151 1096 aa16.05■□□□□ 0.16
SMARCA4-219ENST00000592604 GSTA1P08263 222 aa16.05■□□□□ 0.16
SMARCA4-219ENST00000592604 MMEP08473 750 aa16.05■□□□□ 0.16
SMARCA4-219ENST00000592604 CHRNA3P32297 505 aa16.05■□□□□ 0.16
SMARCA4-219ENST00000592604 COPB2P35606 906 aa16.05■□□□□ 0.16
SMARCA4-219ENST00000592604 ZNF211Q13398 564 aaPredicted RBP16.05■□□□□ 0.16
SMARCA4-219ENST00000592604 PPP2R5AQ15172 486 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms