RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 PRPF40AO75400 957 aaKnown RBP11.68□□□□□ -0.54
SS18-221ENST00000582448 DDAH1O94760 285 aa11.68□□□□□ -0.54
SS18-221ENST00000582448 KIF4AO95239 1232 aa11.68□□□□□ -0.54
SS18-221ENST00000582448 MBD3O95983 291 aa11.68□□□□□ -0.54
SS18-221ENST00000582448 PSMC6P62333 389 aa11.68□□□□□ -0.54
SS18-221ENST00000582448 KRT85P78386 507 aa11.68□□□□□ -0.54
SS18-221ENST00000582448 AKAP17AQ02040 695 aaKnown RBP11.68□□□□□ -0.54
SS18-221ENST00000582448 SSRP1Q08945 709 aaKnown RBP11.68□□□□□ -0.54
SS18-221ENST00000582448 ZNF654Q8IZM8 581 aa11.68□□□□□ -0.54
SS18-221ENST00000582448 LRRC47Q8N1G4 583 aaKnown RBP11.68□□□□□ -0.54
SS18-221ENST00000582448 CHST13Q8NET6 341 aa11.68□□□□□ -0.54
SS18-221ENST00000582448 SCLYQ96I15 445 aa11.68□□□□□ -0.54
SS18-221ENST00000582448 C8orf76Q96K31 380 aa11.68□□□□□ -0.54
SS18-221ENST00000582448 FGD4Q96M96 766 aa11.68□□□□□ -0.54
SS18-221ENST00000582448 NACC1Q96RE7 527 aa11.68□□□□□ -0.54
SS18-221ENST00000582448 KAT14Q9H8E8 782 aa11.68□□□□□ -0.54
SS18-221ENST00000582448 CERS4Q9HA82 394 aa11.68□□□□□ -0.54
SS18-221ENST00000582448 SLC38A10Q9HBR0 1119 aa11.68□□□□□ -0.54
SS18-221ENST00000582448 RBM28Q9NW13 759 aaKnown RBP11.68□□□□□ -0.54
SS18-221ENST00000582448 ORC3Q9UBD5 711 aaPredicted RBP11.68□□□□□ -0.54
SS18-221ENST00000582448 FBXO40Q9UH90 709 aa11.68□□□□□ -0.54
SS18-221ENST00000582448 SLC4A7Q9Y6M7 1214 aa11.68□□□□□ -0.54
SS18-221ENST00000582448 DDX49Q9Y6V7 483 aaKnown RBP11.68□□□□□ -0.54
SS18-221ENST00000582448 BAZ2AQ9UIF9 1905 aaKnown RBP11.68□□□□□ -0.54
SS18-221ENST00000582448 TMEM232C9JQI7 657 aa11.67□□□□□ -0.54
SS18-221ENST00000582448 ATP2A1O14983 1001 aa11.67□□□□□ -0.54
SS18-221ENST00000582448 CTAGE5O15320 804 aa11.67□□□□□ -0.54
SS18-221ENST00000582448 ZEB2O60315 1214 aa11.67□□□□□ -0.54
SS18-221ENST00000582448 B4GALT4O60513 344 aa11.67□□□□□ -0.54
SS18-221ENST00000582448 DEAF1O75398 565 aaPredicted RBP11.67□□□□□ -0.54
SS18-221ENST00000582448 CTDNEP1O95476 244 aa11.67□□□□□ -0.54
SS18-221ENST00000582448 KIF5BP33176 963 aa11.67□□□□□ -0.54
SS18-221ENST00000582448 SNAP25P60880 206 aa11.67□□□□□ -0.54
SS18-221ENST00000582448 TFAP4Q01664 338 aa11.67□□□□□ -0.54
SS18-221ENST00000582448 GNL2Q13823 731 aaKnown RBP11.67□□□□□ -0.54
SS18-221ENST00000582448 FSCN1Q16658 493 aaKnown RBP11.67□□□□□ -0.54
SS18-221ENST00000582448 SLFN13Q68D06 897 aa11.67□□□□□ -0.54
SS18-221ENST00000582448 ALKBH2Q6NS38 261 aa11.67□□□□□ -0.54
SS18-221ENST00000582448 XKR5Q6UX68 686 aa11.67□□□□□ -0.54
SS18-221ENST00000582448 ADAMTSL4Q6UY14 1074 aa11.67□□□□□ -0.54
SS18-221ENST00000582448 TLK2Q86UE8 772 aa11.67□□□□□ -0.54
SS18-221ENST00000582448 FBXO11Q86XK2 927 aa11.67□□□□□ -0.54
SS18-221ENST00000582448 RAB11FIP4Q86YS3 637 aa11.67□□□□□ -0.54
SS18-221ENST00000582448 RPUSD2Q8IZ73 545 aaKnown RBP11.67□□□□□ -0.54
SS18-221ENST00000582448 C1orf127Q8N9H9 656 aa11.67□□□□□ -0.54
SS18-221ENST00000582448 CTCFLQ8NI51 663 aaPredicted RBP11.67□□□□□ -0.54
SS18-221ENST00000582448 RBSNQ9H1K0 784 aa11.67□□□□□ -0.54
SS18-221ENST00000582448 KANSL3Q9P2N6 904 aa11.67□□□□□ -0.54
SS18-221ENST00000582448 MTMR7Q9Y216 660 aa11.67□□□□□ -0.54
SS18-221ENST00000582448 ASTN1O14525 1302 aa11.66□□□□□ -0.54
SS18-221ENST00000582448 ASB14A6NK59 587 aa11.66□□□□□ -0.54
SS18-221ENST00000582448 C9orf172C9J069 976 aa11.66□□□□□ -0.54
SS18-221ENST00000582448 FZD6O60353 706 aa11.66□□□□□ -0.54
SS18-221ENST00000582448 CABYRO75952 493 aa11.66□□□□□ -0.54
SS18-221ENST00000582448 FAM13AO94988 1023 aa11.66□□□□□ -0.54
SS18-221ENST00000582448 BMP3P12645 472 aa11.66□□□□□ -0.54
SS18-221ENST00000582448 ALAS1P13196 640 aa11.66□□□□□ -0.54
SS18-221ENST00000582448 XBP1P17861 261 aa11.66□□□□□ -0.54
SS18-221ENST00000582448 PLA2G5P39877 138 aa11.66□□□□□ -0.54
SS18-221ENST00000582448 KCNQ1P51787 676 aa11.66□□□□□ -0.54
SS18-221ENST00000582448 FOXD4L6Q3SYB3 417 aaPredicted RBP11.66□□□□□ -0.54
SS18-221ENST00000582448 FOXD4L3Q6VB84 417 aaPredicted RBP11.66□□□□□ -0.54
SS18-221ENST00000582448 DEFB128Q7Z7B8 93 aa11.66□□□□□ -0.54
SS18-221ENST00000582448 DGKHQ86XP1 1220 aa11.66□□□□□ -0.54
SS18-221ENST00000582448 DTWD1Q8N5C7 304 aa11.66□□□□□ -0.54
SS18-221ENST00000582448 IL22RA1Q8N6P7 574 aa11.66□□□□□ -0.54
SS18-221ENST00000582448 ENAHQ8N8S7 591 aaPredicted RBP11.66□□□□□ -0.54
SS18-221ENST00000582448 FANCBQ8NB91 859 aa11.66□□□□□ -0.54
SS18-221ENST00000582448 CEP95Q96GE4 821 aa11.66□□□□□ -0.54
SS18-221ENST00000582448 ZNF396Q96N95 335 aaPredicted RBP11.66□□□□□ -0.54
SS18-221ENST00000582448 NOC4LQ9BVI4 516 aaKnown RBP11.66□□□□□ -0.54
SS18-221ENST00000582448 SCAND2PQ9GZW5 306 aaPredicted RBP11.66□□□□□ -0.54
SS18-221ENST00000582448 KATNBL1Q9H079 304 aa11.66□□□□□ -0.54
SS18-221ENST00000582448 ACAD9Q9H845 621 aa11.66□□□□□ -0.54
SS18-221ENST00000582448 PDGFCQ9NRA1 345 aa11.66□□□□□ -0.54
SS18-221ENST00000582448 RNF146Q9NTX7 359 aa11.66□□□□□ -0.54
SS18-221ENST00000582448 CFAP45Q9UL16 551 aa11.66□□□□□ -0.54
SS18-221ENST00000582448 MYH8P13535 1937 aa11.66□□□□□ -0.54
SS18-221ENST00000582448 NID2Q14112 1375 aa11.66□□□□□ -0.54
SS18-221ENST00000582448 GRIN2DO15399 1336 aa11.65□□□□□ -0.54
SS18-221ENST00000582448 STK36Q9NRP7 1315 aa11.65□□□□□ -0.54
SS18-221ENST00000582448 GOLGA6L4A6NEF3 574 aa11.65□□□□□ -0.54
SS18-221ENST00000582448 RPLP1P05386 114 aaKnown RBP11.65□□□□□ -0.54
SS18-221ENST00000582448 CYP2C9P11712 490 aa11.65□□□□□ -0.54
SS18-221ENST00000582448 ATP2A2P16615 1042 aaKnown RBP11.65□□□□□ -0.54
SS18-221ENST00000582448 IFNAR1P17181 557 aa11.65□□□□□ -0.54
SS18-221ENST00000582448 RXRAP19793 462 aa11.65□□□□□ -0.54
SS18-221ENST00000582448 SERPINB4P48594 390 aa11.65□□□□□ -0.54
SS18-221ENST00000582448 MBTPS1Q14703 1052 aa11.65□□□□□ -0.54
SS18-221ENST00000582448 SAFBQ15424 915 aaKnown RBP eCLIP11.65□□□□□ -0.54
SS18-221ENST00000582448 SEC23AQ15436 765 aa11.65□□□□□ -0.54
SS18-221ENST00000582448 KLHL40Q2TBA0 621 aa11.65□□□□□ -0.54
SS18-221ENST00000582448 TMEM63BQ5T3F8 832 aa11.65□□□□□ -0.54
SS18-221ENST00000582448 ATL3Q6DD88 541 aa11.65□□□□□ -0.54
SS18-221ENST00000582448 FERMT3Q86UX7 667 aa11.65□□□□□ -0.54
SS18-221ENST00000582448 FBXO16Q8IX29 292 aaPredicted RBP11.65□□□□□ -0.54
SS18-221ENST00000582448 SLC43A3Q8NBI5 491 aa11.65□□□□□ -0.54
SS18-221ENST00000582448 SYAP1Q96A49 352 aaPredicted RBP11.65□□□□□ -0.54
SS18-221ENST00000582448 ALG1Q9BT22 464 aa11.65□□□□□ -0.54
SS18-221ENST00000582448 MYL10Q9BUA6 226 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms