RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 PCDHB6Q9Y5E3 794 aa6.25□□□□□ -1.41
SMCHD1-204ENST00000581226 SLC4A7Q9Y6M7 1214 aa6.25□□□□□ -1.41
SMCHD1-204ENST00000581226 ZNF536O15090 1300 aa6.25□□□□□ -1.41
SMCHD1-204ENST00000581226 hCG_2014768A0A024R1R8 64 aa6.24□□□□□ -1.41
SMCHD1-204ENST00000581226 A0A0G2JLL6 359 aaPredicted RBP6.24□□□□□ -1.41
SMCHD1-204ENST00000581226 ALG1L2C9J202 215 aa6.24□□□□□ -1.41
SMCHD1-204ENST00000581226 LPLP06858 475 aa6.24□□□□□ -1.41
SMCHD1-204ENST00000581226 ENPP1P22413 925 aa6.24□□□□□ -1.41
SMCHD1-204ENST00000581226 ANAPC15P60006 121 aa6.24□□□□□ -1.41
SMCHD1-204ENST00000581226 TBR1Q16650 682 aa6.24□□□□□ -1.41
SMCHD1-204ENST00000581226 RNF151Q2KHN1 245 aa6.24□□□□□ -1.41
SMCHD1-204ENST00000581226 CDYL2Q8N8U2 506 aa6.24□□□□□ -1.41
SMCHD1-204ENST00000581226 TGFBRAP1Q8WUH2 860 aa6.24□□□□□ -1.41
SMCHD1-204ENST00000581226 NKD2Q969F2 451 aaPredicted RBP6.24□□□□□ -1.41
SMCHD1-204ENST00000581226 GFM2Q969S9 779 aaKnown RBP6.24□□□□□ -1.41
SMCHD1-204ENST00000581226 HAPLN2Q9GZV7 340 aa6.24□□□□□ -1.41
SMCHD1-204ENST00000581226 TMPRSS11EQ9UL52 423 aa6.24□□□□□ -1.41
SMCHD1-204ENST00000581226 A0A0A6YYK5 440 aaPredicted RBP6.23□□□□□ -1.41
SMCHD1-204ENST00000581226 DAPK3O43293 454 aa6.23□□□□□ -1.41
SMCHD1-204ENST00000581226 LAMTOR5O43504 91 aa6.23□□□□□ -1.41
SMCHD1-204ENST00000581226 CNOT4O95628 575 aaKnown RBP6.23□□□□□ -1.41
SMCHD1-204ENST00000581226 HNRNPLP14866 589 aaKnown RBP eCLIP6.23□□□□□ -1.41
SMCHD1-204ENST00000581226 XPAP23025 273 aaPredicted RBP6.23□□□□□ -1.41
SMCHD1-204ENST00000581226 PPARAQ07869 468 aa6.23□□□□□ -1.41
SMCHD1-204ENST00000581226 ITKQ08881 620 aa6.23□□□□□ -1.41
SMCHD1-204ENST00000581226 TRIM25Q14258 630 aaKnown RBP6.23□□□□□ -1.41
SMCHD1-204ENST00000581226 NFIXQ14938 502 aa6.23□□□□□ -1.41
SMCHD1-204ENST00000581226 MAN2A1Q16706 1144 aa6.23□□□□□ -1.41
SMCHD1-204ENST00000581226 LYSMD2Q8IV50 215 aa6.23□□□□□ -1.41
SMCHD1-204ENST00000581226 RSAD2Q8WXG1 361 aa6.23□□□□□ -1.41
SMCHD1-204ENST00000581226 C20orf173Q96LM9 149 aa6.23□□□□□ -1.41
SMCHD1-204ENST00000581226 SOX7Q9BT81 388 aa6.23□□□□□ -1.41
SMCHD1-204ENST00000581226 TRIM8Q9BZR9 551 aa6.23□□□□□ -1.41
SMCHD1-204ENST00000581226 PRDM12Q9H4Q4 367 aa6.23□□□□□ -1.41
SMCHD1-204ENST00000581226 RTEL1Q9NZ71 1219 aa6.23□□□□□ -1.41
SMCHD1-204ENST00000581226 PRSS50Q9UI38 385 aa6.23□□□□□ -1.41
SMCHD1-204ENST00000581226 EDARQ9UNE0 448 aa6.23□□□□□ -1.41
SMCHD1-204ENST00000581226 WASHC2AQ641Q2 1341 aa6.23□□□□□ -1.41
SMCHD1-204ENST00000581226 KRTAP9-7A8MTY7 169 aa6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 K7ESF4 209 aa6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 ARHGAP6O43182 974 aa6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 KATNA1O75449 491 aa6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 CELA3BP08861 270 aa6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 GPR15P49685 360 aa6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 EPHB4P54760 987 aa6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 CTSWP56202 376 aa6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 LGALS4P56470 323 aa6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 RAC3P60763 192 aa6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 ERVK-21P61565 698 aa6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 IGBP1P78318 339 aa6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 MTMR1Q13613 665 aa6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 TBC1D10BQ4KMP7 808 aaPredicted RBP6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 OR14K1Q8NGZ2 314 aa6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 OR14C36Q8NHC7 312 aa6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 GCDHQ92947 438 aaPredicted RBP6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 MTMR8Q96EF0 704 aa6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 NEIL1Q96FI4 390 aaPredicted RBP6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 RAX2Q96IS3 184 aa6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 LMF1Q96S06 567 aa6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 PTPN18Q99952 460 aa6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 MENTQ9BUN1 341 aa6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 OSBPL6Q9BZF3 934 aa6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 QRSL1Q9H0R6 528 aaKnown RBP6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 CCDC8Q9H0W5 538 aaPredicted RBP6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 KCTD10Q9H3F6 313 aa6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 RAPGEFL1Q9UHV5 662 aa6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 PUF60Q9UHX1 559 aaKnown RBP6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 CTDP1Q9Y5B0 961 aaPredicted RBP6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 RBM8AQ9Y5S9 174 aaKnown RBP6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 WASHC2CQ9Y4E1 1318 aa6.22□□□□□ -1.41
SMCHD1-204ENST00000581226 NPEPPSL1A6NEC2 478 aa6.21□□□□□ -1.42
SMCHD1-204ENST00000581226 NRP2O60462 931 aa6.21□□□□□ -1.42
SMCHD1-204ENST00000581226 FSBPO95073 299 aa6.21□□□□□ -1.42
SMCHD1-204ENST00000581226 PLATP00750 562 aa6.21□□□□□ -1.42
SMCHD1-204ENST00000581226 GPR3P46089 330 aa6.21□□□□□ -1.42
SMCHD1-204ENST00000581226 NRG3P56975 720 aa6.21□□□□□ -1.42
SMCHD1-204ENST00000581226 ATP2C1P98194 919 aaPredicted RBP6.21□□□□□ -1.42
SMCHD1-204ENST00000581226 KLF1Q13351 362 aaPredicted RBP6.21□□□□□ -1.42
SMCHD1-204ENST00000581226 NFYCQ13952 458 aa6.21□□□□□ -1.42
SMCHD1-204ENST00000581226 CCDC178Q5BJE1 867 aa6.21□□□□□ -1.42
SMCHD1-204ENST00000581226 SLFN13Q68D06 897 aa6.21□□□□□ -1.42
SMCHD1-204ENST00000581226 LMBR1LQ6UX01 489 aa6.21□□□□□ -1.42
SMCHD1-204ENST00000581226 GAREM2Q75VX8 874 aa6.21□□□□□ -1.42
SMCHD1-204ENST00000581226 LPPQ93052 612 aa6.21□□□□□ -1.42
SMCHD1-204ENST00000581226 SLC7A6OSQ96CW6 309 aaPredicted RBP6.21□□□□□ -1.42
SMCHD1-204ENST00000581226 LRRC37BQ96QE4 947 aa6.21□□□□□ -1.42
SMCHD1-204ENST00000581226 C12orf65Q9H3J6 166 aaKnown RBP6.21□□□□□ -1.42
SMCHD1-204ENST00000581226 SEC61A2Q9H9S3 476 aa6.21□□□□□ -1.42
SMCHD1-204ENST00000581226 HOMER2Q9NSB8 354 aa6.21□□□□□ -1.42
SMCHD1-204ENST00000581226 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.21□□□□□ -1.42
SMCHD1-204ENST00000581226 C2orf78A6NCI8 922 aa6.2□□□□□ -1.42
SMCHD1-204ENST00000581226 CD69Q07108 199 aa6.2□□□□□ -1.42
SMCHD1-204ENST00000581226 TOR2AQ5JU69 321 aa6.2□□□□□ -1.42
SMCHD1-204ENST00000581226 SYDE2Q5VT97 1194 aa6.2□□□□□ -1.42
SMCHD1-204ENST00000581226 CLEC14AQ86T13 490 aa6.2□□□□□ -1.42
SMCHD1-204ENST00000581226 SLC41A1Q8IVJ1 513 aa6.2□□□□□ -1.42
SMCHD1-204ENST00000581226 RPUSD2Q8IZ73 545 aaKnown RBP6.2□□□□□ -1.42
SMCHD1-204ENST00000581226 PLA2G15Q8NCC3 412 aa6.2□□□□□ -1.42
SMCHD1-204ENST00000581226 ORAI2Q96SN7 254 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms