RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 TMEM41AQ96HV5 264 aa2.51□□□□□ -2.01
CHD3-217ENST00000574022 CDK5RAP3Q96JB5 506 aa2.51□□□□□ -2.01
CHD3-217ENST00000574022 FCRL2Q96LA5 508 aaPredicted RBP2.51□□□□□ -2.01
CHD3-217ENST00000574022 GBP4Q96PP9 640 aa2.51□□□□□ -2.01
CHD3-217ENST00000574022 BTBD1Q9H0C5 482 aa2.51□□□□□ -2.01
CHD3-217ENST00000574022 PRDM12Q9H4Q4 367 aa2.51□□□□□ -2.01
CHD3-217ENST00000574022 ARMT1Q9H993 441 aa2.51□□□□□ -2.01
CHD3-217ENST00000574022 KIAA1586Q9HCI6 787 aa2.51□□□□□ -2.01
CHD3-217ENST00000574022 RRN3Q9NYV6 651 aa2.51□□□□□ -2.01
CHD3-217ENST00000574022 ZC3H7BQ9UGR2 993 aaKnown RBP2.51□□□□□ -2.01
CHD3-217ENST00000574022 TMPRSS11EQ9UL52 423 aa2.51□□□□□ -2.01
CHD3-217ENST00000574022 PADI4Q9UM07 663 aa2.51□□□□□ -2.01
CHD3-217ENST00000574022 MAGED2Q9UNF1 606 aaPredicted RBP2.51□□□□□ -2.01
CHD3-217ENST00000574022 GPR52Q9Y2T5 361 aa2.51□□□□□ -2.01
CHD3-217ENST00000574022 RWDD3Q9Y3V2 267 aa2.51□□□□□ -2.01
CHD3-217ENST00000574022 CEP83Q9Y592 693 aa2.51□□□□□ -2.01
CHD3-217ENST00000574022 NR2E3Q9Y5X4 410 aa2.51□□□□□ -2.01
CHD3-217ENST00000574022 LRRFIP2Q9Y608 721 aaKnown RBP2.51□□□□□ -2.01
CHD3-217ENST00000574022 CFAP20Q9Y6A4 193 aaKnown RBP2.51□□□□□ -2.01
CHD3-217ENST00000574022 MYPNQ86TC9 1320 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 A0A1B0GVC2 190 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 A0A1W2PQ45 241 aaPredicted RBP2.5□□□□□ -2.01
CHD3-217ENST00000574022 A0A1W2PQY0 241 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 PRAMEF22A3QJZ6 481 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 POM121BA6NF01 834 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 C9orf172C9J069 976 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 GOLGA6L22H0YM25 854 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 J3KRW8 73 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 HGSO14964 777 aaPredicted RBP2.5□□□□□ -2.01
CHD3-217ENST00000574022 SLC16A6O15403 523 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 FFAR2O15552 330 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 DHX15O43143 795 aaKnown RBP2.5□□□□□ -2.01
CHD3-217ENST00000574022 FRS3O43559 492 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 TIMM44O43615 452 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 TADA3O75528 432 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 RNASEH2AO75792 299 aaKnown RBP2.5□□□□□ -2.01
CHD3-217ENST00000574022 FGF18O76093 207 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 RHOBTB3O94955 611 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 CSTBP04080 98 aaKnown RBP2.5□□□□□ -2.01
CHD3-217ENST00000574022 NTRK1P04629 796 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 MMEP08473 750 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 ADMP35318 185 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 MAP2K6P52564 334 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 HERVK_113P62684 666 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 SNRPNP63162 240 aaKnown RBP2.5□□□□□ -2.01
CHD3-217ENST00000574022 SLC6A3Q01959 620 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 DSC2Q02487 901 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 RASSF7Q02833 373 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 MALLQ13021 153 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 GRM1Q13255 1194 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 G3BP1Q13283 466 aaKnown RBP eCLIP2.5□□□□□ -2.01
CHD3-217ENST00000574022 IL10RAQ13651 578 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 CNGB1Q14028 1251 aaPredicted RBP2.5□□□□□ -2.01
CHD3-217ENST00000574022 FGL2Q14314 439 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 STARD3Q14849 445 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 NKPD1Q17RQ9 610 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 MUM1L1Q5H9M0 696 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 EMC4Q5J8M3 183 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 PRAMEF18Q5VWM3 479 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 PRAMEF9Q5VWM5 478 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 KIAA1841Q6NSI8 718 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 HIBCHQ6NVY1 386 aaPredicted RBP2.5□□□□□ -2.01
CHD3-217ENST00000574022 UNQ6494/PRO21346Q6UXR6 183 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 MIGA2Q7L4E1 593 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 TMC6Q7Z403 805 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 ZAR1Q86SH2 424 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 TTC7BQ86TV6 843 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 COL23A1Q86Y22 540 aaPredicted RBP2.5□□□□□ -2.01
CHD3-217ENST00000574022 CILP2Q8IUL8 1156 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 LYSMD2Q8IV50 215 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 TRIM48Q8IWZ4 208 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 DRC7Q8IY82 874 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 DZIP1LQ8IYY4 767 aaKnown RBP2.5□□□□□ -2.01
CHD3-217ENST00000574022 CCDC33Q8N5R6 958 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 GPATCH11Q8N954 259 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 NAXEQ8NCW5 288 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 C1orf131Q8NDD1 294 aaKnown RBP2.5□□□□□ -2.01
CHD3-217ENST00000574022 PLBD2Q8NHP8 589 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 PHOSPHO1Q8TCT1 267 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 NSUN6Q8TEA1 469 aaKnown RBP2.5□□□□□ -2.01
CHD3-217ENST00000574022 WHAMMQ8TF30 809 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 CLEC4DQ8WXI8 215 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 ASB15Q8WXK1 588 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 DPF2Q92785 391 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 GATA6Q92908 595 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 IRF7Q92985 503 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 KAT5Q92993 513 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 RGMAQ96B86 450 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 FOXRED1Q96CU9 486 aaPredicted RBP2.5□□□□□ -2.01
CHD3-217ENST00000574022 PPM1MQ96MI6 270 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 NT5C1BQ96P26 610 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 PPP1R16BQ96T49 567 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 PTPN18Q99952 460 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 FAM83CQ9BQN1 747 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 PLCD4Q9BRC7 762 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 ADI1Q9BV57 179 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 C22orf23Q9BZE7 217 aa2.5□□□□□ -2.01
CHD3-217ENST00000574022 UNKQ9C0B0 810 aaKnown RBP2.5□□□□□ -2.01
CHD3-217ENST00000574022 ZMAT3Q9HA38 289 aaKnown RBP2.5□□□□□ -2.01
CHD3-217ENST00000574022 ZNF287Q9HBT7 754 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms