RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 CCDC140Q96MF4 163 aa7.21□□□□□ -1.26
VPS53-212ENST00000572259 SMAD5Q99717 465 aaKnown RBP7.21□□□□□ -1.26
VPS53-212ENST00000572259 RSPH9Q9H1X1 276 aaPredicted RBP7.21□□□□□ -1.26
VPS53-212ENST00000572259 TAOK3Q9H2K8 898 aa7.21□□□□□ -1.26
VPS53-212ENST00000572259 AASDHPPTQ9NRN7 309 aa7.21□□□□□ -1.26
VPS53-212ENST00000572259 RNF181Q9P0P0 153 aa7.21□□□□□ -1.26
VPS53-212ENST00000572259 LUZP4Q9P127 313 aa7.21□□□□□ -1.26
VPS53-212ENST00000572259 USP25Q9UHP3 1055 aa7.21□□□□□ -1.26
VPS53-212ENST00000572259 ANGEL1Q9UNK9 670 aaKnown RBP7.21□□□□□ -1.26
VPS53-212ENST00000572259 GPR55Q9Y2T6 319 aaPredicted RBP7.21□□□□□ -1.26
VPS53-212ENST00000572259 DAAM1Q9Y4D1 1078 aa7.21□□□□□ -1.26
VPS53-212ENST00000572259 ARFGEF2Q9Y6D5 1785 aa7.2□□□□□ -1.26
VPS53-212ENST00000572259 KRTAP4-8A0A0G2JLE6 195 aa7.2□□□□□ -1.26
VPS53-212ENST00000572259 PRODHO43272 600 aa7.2□□□□□ -1.26
VPS53-212ENST00000572259 TBX1O43435 398 aa7.2□□□□□ -1.26
VPS53-212ENST00000572259 FKTNO75072 461 aa7.2□□□□□ -1.26
VPS53-212ENST00000572259 RNASEH2AO75792 299 aaKnown RBP7.2□□□□□ -1.26
VPS53-212ENST00000572259 PCCAP05165 728 aaPredicted RBP7.2□□□□□ -1.26
VPS53-212ENST00000572259 GSTM1P09488 218 aa7.2□□□□□ -1.26
VPS53-212ENST00000572259 ENDOUP21128 410 aaKnown RBP7.2□□□□□ -1.26
VPS53-212ENST00000572259 ITGB7P26010 798 aa7.2□□□□□ -1.26
VPS53-212ENST00000572259 KCNJ6P48051 423 aa7.2□□□□□ -1.26
VPS53-212ENST00000572259 PPM1FP49593 454 aaPredicted RBP7.2□□□□□ -1.26
VPS53-212ENST00000572259 SF3B3Q15393 1217 aaKnown RBP7.2□□□□□ -1.26
VPS53-212ENST00000572259 CCDC152Q4G0S7 254 aa7.2□□□□□ -1.26
VPS53-212ENST00000572259 CXorf57Q6NSI4 855 aaKnown RBP7.2□□□□□ -1.26
VPS53-212ENST00000572259 SUPT20HQ8NEM7 779 aa7.2□□□□□ -1.26
VPS53-212ENST00000572259 BCL7CQ8WUZ0 217 aaPredicted RBP7.2□□□□□ -1.26
VPS53-212ENST00000572259 MTMR8Q96EF0 704 aa7.2□□□□□ -1.26
VPS53-212ENST00000572259 KRTAP4-12Q9BQ66 201 aa7.2□□□□□ -1.26
VPS53-212ENST00000572259 HERPUD2Q9BSE4 406 aa7.2□□□□□ -1.26
VPS53-212ENST00000572259 ZNF180Q9UJW8 692 aa7.2□□□□□ -1.26
VPS53-212ENST00000572259 FBXO2Q9UK22 296 aaPredicted RBP7.2□□□□□ -1.26
VPS53-212ENST00000572259 NOB1Q9ULX3 412 aaKnown RBP7.2□□□□□ -1.26
VPS53-212ENST00000572259 PCDHA11Q9Y5I1 949 aa7.2□□□□□ -1.26
VPS53-212ENST00000572259 DICER1Q9UPY3 1922 aaKnown RBP7.2□□□□□ -1.26
VPS53-212ENST00000572259 FER1L6Q2WGJ9 1857 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 RASSF10A6NK89 507 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 PRRT4C9JH25 899 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 ADAM23O75077 832 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 MED26O95402 600 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 ESR1P03372 595 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 SNRPB2P08579 225 aaKnown RBP7.19□□□□□ -1.26
VPS53-212ENST00000572259 RPL10P27635 214 aaKnown RBP7.19□□□□□ -1.26
VPS53-212ENST00000572259 HOXC12P31275 282 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 CD96P40200 585 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 GRAPQ13588 217 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 MTMR1Q13613 665 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 ALDH1L2Q3SY69 923 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 ANGEL2Q5VTE6 544 aaKnown RBP7.19□□□□□ -1.26
VPS53-212ENST00000572259 NSMFQ6X4W1 530 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 G2E3Q7L622 706 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 VSIG10LQ86VR7 867 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 DTX1Q86Y01 620 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 C16orf71Q8IYS4 520 aaPredicted RBP7.19□□□□□ -1.26
VPS53-212ENST00000572259 PJA1Q8NG27 643 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 LINS1Q8NG48 757 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 GRAPLQ8TC17 118 aaPredicted RBP7.19□□□□□ -1.26
VPS53-212ENST00000572259 SELENOOQ9BVL4 669 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 SARGQ9BW04 601 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 CDADC1Q9BWV3 514 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 VPS33BQ9H267 617 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 NKX2-4Q9H2Z4 354 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 CYP26B1Q9NR63 512 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 ARHGEF4Q9NR80 690 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 PCMTD2Q9NV79 361 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 OBP2AQ9NY56 170 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 CCDC39Q9UFE4 941 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 PUF60Q9UHX1 559 aaKnown RBP7.19□□□□□ -1.26
VPS53-212ENST00000572259 PTPRCP08575 1304 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 MYH3P11055 1940 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 ABCC12Q96J65 1359 aa7.19□□□□□ -1.26
VPS53-212ENST00000572259 COL11A2P13942 1736 aaPredicted RBP7.18□□□□□ -1.26
VPS53-212ENST00000572259 C2orf71A6NGG8 1288 aa7.18□□□□□ -1.26
VPS53-212ENST00000572259 STXBP3O00186 592 aa7.18□□□□□ -1.26
VPS53-212ENST00000572259 ADCY3O60266 1144 aa7.18□□□□□ -1.26
VPS53-212ENST00000572259 EYA4O95677 639 aa7.18□□□□□ -1.26
VPS53-212ENST00000572259 PRNPP04156 253 aa7.18□□□□□ -1.26
VPS53-212ENST00000572259 CD8BP10966 210 aa7.18□□□□□ -1.26
VPS53-212ENST00000572259 FGFR1P11362 822 aa7.18□□□□□ -1.26
VPS53-212ENST00000572259 ECI1P42126 302 aa7.18□□□□□ -1.26
VPS53-212ENST00000572259 GRIA2P42262 883 aa7.18□□□□□ -1.26
VPS53-212ENST00000572259 CD97P48960 835 aa7.18□□□□□ -1.26
VPS53-212ENST00000572259 SEPHS1P49903 392 aa7.18□□□□□ -1.26
VPS53-212ENST00000572259 GEMIN4P57678 1058 aaKnown RBP7.18□□□□□ -1.26
VPS53-212ENST00000572259 RPS8P62241 208 aaKnown RBP7.18□□□□□ -1.26
VPS53-212ENST00000572259 ZP2Q05996 745 aa7.18□□□□□ -1.26
VPS53-212ENST00000572259 ZKSCAN2Q63HK3 967 aa7.18□□□□□ -1.26
VPS53-212ENST00000572259 IL31Q6EBC2 164 aa7.18□□□□□ -1.26
VPS53-212ENST00000572259 SP8Q8IXZ3 490 aa7.18□□□□□ -1.26
VPS53-212ENST00000572259 SYNE4Q8N205 404 aa7.18□□□□□ -1.26
VPS53-212ENST00000572259 FLCNQ8NFG4 579 aa7.18□□□□□ -1.26
VPS53-212ENST00000572259 FCRL3Q96P31 734 aaPredicted RBP7.18□□□□□ -1.26
VPS53-212ENST00000572259 STRBPQ96SI9 672 aaKnown RBP7.18□□□□□ -1.26
VPS53-212ENST00000572259 SLC12A9Q9BXP2 914 aa7.18□□□□□ -1.26
VPS53-212ENST00000572259 CARS2Q9HA77 564 aaKnown RBP7.18□□□□□ -1.26
VPS53-212ENST00000572259 IFT122Q9HBG6 1241 aa7.18□□□□□ -1.26
VPS53-212ENST00000572259 C9orf78Q9NZ63 289 aaPredicted RBP7.18□□□□□ -1.26
VPS53-212ENST00000572259 LMCD1Q9NZU5 365 aa7.18□□□□□ -1.26
VPS53-212ENST00000572259 HDAC5Q9UQL6 1122 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms