RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 SMIM23A6NLE4 172 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 PODXLO00592 558 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 MEIS2O14770 477 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 SLC8A1P32418 973 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 SREBF1P36956 1147 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 PPP2R5AQ15172 486 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 USH1GQ495M9 461 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 ERMARDQ5T6L9 678 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 CEP57Q86XR8 500 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 CERKQ8TCT0 537 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 SCLT1Q96NL6 688 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 OSBPL7Q9BZF2 842 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 HAUS2Q9NVX0 235 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 NYAP2Q9P242 653 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 APEX2Q9UBZ4 518 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 MTUS1Q9ULD2 1270 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 UBE4BO95155 1302 aa11.64□□□□□ -0.55
CCDC40-207ENST00000572253 CAND2O75155 1236 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 EEF2P13639 858 aaKnown RBP11.63□□□□□ -0.55
CCDC40-207ENST00000572253 CYP2J2P51589 502 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 DRG2P55039 364 aaKnown RBP11.63□□□□□ -0.55
CCDC40-207ENST00000572253 PPATQ06203 517 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 MAPK7Q13164 816 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 NFIL3Q16649 462 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 SYCP3Q8IZU3 236 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 ZKSCAN4Q969J2 545 aaPredicted RBP11.63□□□□□ -0.55
CCDC40-207ENST00000572253 TEKT1Q969V4 418 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 PGM2Q96G03 612 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 INTS9Q9NV88 658 aaKnown RBP11.63□□□□□ -0.55
CCDC40-207ENST00000572253 PFASO15067 1338 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 AHDC1Q5TGY3 1603 aaPredicted RBP11.63□□□□□ -0.55
CCDC40-207ENST00000572253 SFI1A8K8P3 1242 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 MSH4O15457 936 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 PHF2O75151 1096 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 CHN1P15882 459 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 POU5F1Q01860 360 aaKnown RBP11.63□□□□□ -0.55
CCDC40-207ENST00000572253 ZNF211Q13398 564 aaPredicted RBP11.63□□□□□ -0.55
CCDC40-207ENST00000572253 RINT1Q6NUQ1 792 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 TPH2Q8IWU9 490 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 FAM178BQ8IXR5 827 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 MDM1Q8TC05 714 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 RUNDC3BQ96NL0 473 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 ZC3H12CQ9C0D7 883 aaKnown RBP11.63□□□□□ -0.55
CCDC40-207ENST00000572253 CXorf56Q9H5V9 222 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 DCDC2CA8MYV0 355 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 EXOC3O60645 756 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 GGPS1O95749 300 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 AGTP01019 485 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 NMT1P30419 496 aaKnown RBP11.63□□□□□ -0.55
CCDC40-207ENST00000572253 TRAF1Q13077 416 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 NBPF9Q3BBW0 867 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 CERKLQ49MI3 558 aaPredicted RBP11.63□□□□□ -0.55
CCDC40-207ENST00000572253 TAOK1Q7L7X3 1001 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 FUKQ8N0W3 1084 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 ATP8B4Q8TF62 1192 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 TUFT1Q9NNX1 390 aa11.63□□□□□ -0.55
CCDC40-207ENST00000572253 CCT8L1PA6NM43 557 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 TMEM110-MUSTN1A8MSY1 372 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 TGFB1I1O43294 461 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 SLMAPQ14BN4 828 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 CRY2Q49AN0 593 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 FAM196AQ6ZSG2 479 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 GLG1Q92896 1179 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 CCDC113Q9H0I3 377 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 NRAPQ86VF7 1730 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 DNAJC8O75937 253 aaPredicted RBP11.62□□□□□ -0.55
CCDC40-207ENST00000572253 VIMP08670 466 aaKnown RBP11.62□□□□□ -0.55
CCDC40-207ENST00000572253 CIITAP33076 1130 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 SCNN1DP51172 638 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 ICA1Q05084 483 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 KCNA1Q09470 495 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 SLC15A2Q16348 729 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 PREPLQ4J6C6 727 aaPredicted RBP11.62□□□□□ -0.55
CCDC40-207ENST00000572253 COL23A1Q86Y22 540 aaPredicted RBP11.62□□□□□ -0.55
CCDC40-207ENST00000572253 AGPAT1Q99943 283 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 TXLNGYQ9BZA5 131 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 THAP2Q9H0W7 228 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 AZI2Q9H6S1 392 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 RGL1Q9NZL6 768 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 FAM86B1E9PN63 330 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 DNM1LO00429 736 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 SERPINB2P05120 415 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 FAM86B2P0C5J1 330 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 CTTNQ14247 550 aaKnown RBP11.62□□□□□ -0.55
CCDC40-207ENST00000572253 SYDE2Q5VT97 1194 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 CDC42EP5Q6NZY7 148 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 PTF1AQ7RTS3 328 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 PIGOQ8TEQ8 1089 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 MKL1Q969V6 931 aa11.62□□□□□ -0.55
CCDC40-207ENST00000572253 TMX4Q9H1E5 349 aaPredicted RBP11.62□□□□□ -0.55
CCDC40-207ENST00000572253 CNOT7Q9UIV1 285 aaKnown RBP11.62□□□□□ -0.55
CCDC40-207ENST00000572253 ASAP2O43150 1006 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 DYDC1Q8WWB3 177 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 ARHGEF26Q96DR7 871 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 BORCS6Q96GS4 357 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 KIF13BQ9NQT8 1826 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 ZDHHC18Q9NUE0 388 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 TMOD4Q9NZQ9 345 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 ALG6Q9Y672 507 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 LOC102724159A0A0B4J2E5 919 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 131 ms