RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 A0A087X0B3 334 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 MGEA5O60502 916 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 NMT2O60551 498 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 SKIP12755 728 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 PRDX5P30044 214 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 CASP14P31944 242 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 RCAN1P53805 252 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 CCDC122Q5T0U0 273 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 USP49Q70CQ1 688 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 CABP7Q86V35 215 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 C11orf74Q86VG3 221 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 DCLK2Q8N568 766 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 BRIP1Q9BX63 1249 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 CEP44Q9C0F1 390 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 TPK1Q9H3S4 243 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 RNPEPL1Q9HAU8 725 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 NOVA2Q9UNW9 492 aaKnown RBP11.67□□□□□ -0.54
CLK3-226ENST00000569406 PCDHB6Q9Y5E3 794 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 NPHP3-ACAD11A0A0J9YXS1 232 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 NVLO15381 856 aaKnown RBP11.66□□□□□ -0.54
CLK3-226ENST00000569406 IDEP14735 1019 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 PNOCQ13519 176 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 TREML1Q86YW5 311 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 RIBC1Q8N443 379 aaPredicted RBP11.66□□□□□ -0.54
CLK3-226ENST00000569406 CENPKQ9BS16 269 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 PDP2Q9P2J9 529 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 TEX33O43247 280 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 RPS6KA4O75676 772 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 BAG3O95817 575 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 POTEJP0CG39 1038 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 RARAP10276 462 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 GNAZP19086 355 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 SYT2Q8N9I0 419 aaPredicted RBP11.66□□□□□ -0.54
CLK3-226ENST00000569406 GABPB2Q8TAK5 448 aaPredicted RBP11.66□□□□□ -0.54
CLK3-226ENST00000569406 NAP1L3Q99457 506 aaPredicted RBP11.66□□□□□ -0.54
CLK3-226ENST00000569406 TIPINQ9BVW5 301 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 GINM1Q9NU53 330 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 SEC63Q9UGP8 760 aaKnown RBP11.66□□□□□ -0.54
CLK3-226ENST00000569406 MAGEB6P1A0A0J9YX57 407 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 SFI1A8K8P3 1242 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 SPECC1L-ADORA2AF8WAN1 911 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 MARCH6O60337 910 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 PLEKHA8P1O95397 391 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 SHBGP04278 402 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 AFMP43652 599 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 PPP2R2AP63151 447 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 SLC35G1Q2M3R5 365 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 CCDC153Q494R4 210 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 OTUD6AQ7L8S5 288 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 MTUS1Q9ULD2 1270 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 LRCH1Q9Y2L9 728 aa11.66□□□□□ -0.54
CLK3-226ENST00000569406 CCDC160A6NGH7 325 aa11.65□□□□□ -0.54
CLK3-226ENST00000569406 TBCAO75347 108 aaKnown RBP11.65□□□□□ -0.54
CLK3-226ENST00000569406 TJP3O95049 919 aa11.65□□□□□ -0.54
CLK3-226ENST00000569406 ASMTLO95671 621 aa11.65□□□□□ -0.54
CLK3-226ENST00000569406 CCT6AP40227 531 aaKnown RBP11.65□□□□□ -0.54
CLK3-226ENST00000569406 SH3BGRP55822 239 aaPredicted RBP11.65□□□□□ -0.54
CLK3-226ENST00000569406 CDK17Q00537 523 aa11.65□□□□□ -0.54
CLK3-226ENST00000569406 KIF22Q14807 665 aa11.65□□□□□ -0.54
CLK3-226ENST00000569406 WTAPQ15007 396 aa11.65□□□□□ -0.54
CLK3-226ENST00000569406 CHADLQ6NUI6 762 aa11.65□□□□□ -0.54
CLK3-226ENST00000569406 C8orf74Q6P047 294 aa11.65□□□□□ -0.54
CLK3-226ENST00000569406 FERMT2Q96AC1 680 aa11.65□□□□□ -0.54
CLK3-226ENST00000569406 NRDE2Q9H7Z3 1164 aa11.65□□□□□ -0.54
CLK3-226ENST00000569406 DDX18Q9NVP1 670 aaKnown RBP11.65□□□□□ -0.54
CLK3-226ENST00000569406 SMARCAL1Q9NZC9 954 aa11.65□□□□□ -0.54
CLK3-226ENST00000569406 DOLKQ9UPQ8 538 aa11.65□□□□□ -0.54
CLK3-226ENST00000569406 ZNF652Q9Y2D9 606 aa11.65□□□□□ -0.54
CLK3-226ENST00000569406 FOCADQ5VW36 1801 aa11.65□□□□□ -0.54
CLK3-226ENST00000569406 TEX28O15482 410 aa11.65□□□□□ -0.54
CLK3-226ENST00000569406 ORC4O43929 436 aa11.65□□□□□ -0.54
CLK3-226ENST00000569406 PRDM1O75626 825 aa11.65□□□□□ -0.54
CLK3-226ENST00000569406 CYP1A1P04798 512 aaPredicted RBP11.65□□□□□ -0.54
CLK3-226ENST00000569406 CARSP49589 748 aaKnown RBP11.65□□□□□ -0.54
CLK3-226ENST00000569406 NT5DC1Q5TFE4 455 aa11.65□□□□□ -0.54
CLK3-226ENST00000569406 DIS3L2Q8IYB7 885 aaKnown RBP11.65□□□□□ -0.54
CLK3-226ENST00000569406 SPATA20Q8TB22 786 aa11.65□□□□□ -0.54
CLK3-226ENST00000569406 AZIN2Q96A70 460 aa11.65□□□□□ -0.54
CLK3-226ENST00000569406 HSPBAP1Q96EW2 488 aa11.65□□□□□ -0.54
CLK3-226ENST00000569406 PHF20Q9BVI0 1012 aa11.65□□□□□ -0.54
CLK3-226ENST00000569406 FOXP1Q9H334 677 aaPredicted RBP11.65□□□□□ -0.54
CLK3-226ENST00000569406 DCP1AQ9NPI6 582 aaPredicted RBP11.65□□□□□ -0.54
CLK3-226ENST00000569406 LRRC4BQ9NT99 713 aa11.65□□□□□ -0.54
CLK3-226ENST00000569406 CNOT8Q9UFF9 292 aaKnown RBP11.65□□□□□ -0.54
CLK3-226ENST00000569406 SLC12A6Q9UHW9 1150 aa11.65□□□□□ -0.54
CLK3-226ENST00000569406 DIS3Q9Y2L1 958 aaKnown RBP11.65□□□□□ -0.54
CLK3-226ENST00000569406 RBMX2Q9Y388 322 aaKnown RBP11.65□□□□□ -0.54
CLK3-226ENST00000569406 PPME1Q9Y570 386 aa11.65□□□□□ -0.54
CLK3-226ENST00000569406 CYP2D6P10635 497 aa11.64□□□□□ -0.55
CLK3-226ENST00000569406 S100A1P23297 94 aa11.64□□□□□ -0.55
CLK3-226ENST00000569406 PTPREP23469 700 aa11.64□□□□□ -0.55
CLK3-226ENST00000569406 RXRGP48443 463 aa11.64□□□□□ -0.55
CLK3-226ENST00000569406 SSRP1Q08945 709 aaKnown RBP11.64□□□□□ -0.55
CLK3-226ENST00000569406 CYTH1Q15438 398 aa11.64□□□□□ -0.55
CLK3-226ENST00000569406 RTN1Q16799 776 aa11.64□□□□□ -0.55
CLK3-226ENST00000569406 STK32AQ8WU08 396 aa11.64□□□□□ -0.55
CLK3-226ENST00000569406 TFCP2L1Q9NZI6 479 aa11.64□□□□□ -0.55
CLK3-226ENST00000569406 MOSPD1Q9UJG1 213 aa11.64□□□□□ -0.55
CLK3-226ENST00000569406 USP20Q9Y2K6 914 aa11.64□□□□□ -0.55
CLK3-226ENST00000569406 ARIH1Q9Y4X5 557 aaPredicted RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms