RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 ZNF697Q5TEC3 545 aa10.9□□□□□ -0.66
CLK3-220ENST00000567992 FAM117BQ6P1L5 589 aa10.9□□□□□ -0.66
CLK3-220ENST00000567992 USP49Q70CQ1 688 aa10.9□□□□□ -0.66
CLK3-220ENST00000567992 CABP7Q86V35 215 aa10.9□□□□□ -0.66
CLK3-220ENST00000567992 IFNLR1Q8IU57 520 aaPredicted RBP10.9□□□□□ -0.66
CLK3-220ENST00000567992 DEFB123Q8N688 67 aa10.9□□□□□ -0.66
CLK3-220ENST00000567992 SP7Q8TDD2 431 aaPredicted RBP10.9□□□□□ -0.66
CLK3-220ENST00000567992 TCP11Q8WWU5 503 aa10.9□□□□□ -0.66
CLK3-220ENST00000567992 BSNDQ8WZ55 320 aa10.9□□□□□ -0.66
CLK3-220ENST00000567992 NLRP4Q96MN2 994 aa10.9□□□□□ -0.66
CLK3-220ENST00000567992 CCDC43Q96MW1 224 aaKnown RBP10.9□□□□□ -0.66
CLK3-220ENST00000567992 RUSC1Q9BVN2 902 aa10.9□□□□□ -0.66
CLK3-220ENST00000567992 GCOM2Q9BZD3 368 aaPredicted RBP10.9□□□□□ -0.66
CLK3-220ENST00000567992 CSRNP2Q9H175 543 aa10.9□□□□□ -0.66
CLK3-220ENST00000567992 POLR3FQ9H1D9 316 aaPredicted RBP10.9□□□□□ -0.66
CLK3-220ENST00000567992 SEMA6BQ9H3T3 888 aa10.9□□□□□ -0.66
CLK3-220ENST00000567992 RGS18Q9NS28 235 aa10.9□□□□□ -0.66
CLK3-220ENST00000567992 MTMR10Q9NXD2 777 aa10.9□□□□□ -0.66
CLK3-220ENST00000567992 MSRAQ9UJ68 235 aa10.9□□□□□ -0.66
CLK3-220ENST00000567992 ARHGEF35A5YM69 484 aa10.89□□□□□ -0.67
CLK3-220ENST00000567992 C9IYK1 514 aa10.89□□□□□ -0.67
CLK3-220ENST00000567992 GPR182O15218 404 aa10.89□□□□□ -0.67
CLK3-220ENST00000567992 SLC26A4O43511 780 aa10.89□□□□□ -0.67
CLK3-220ENST00000567992 TLL1O43897 1013 aa10.89□□□□□ -0.67
CLK3-220ENST00000567992 SRGAP2CP0DJJ0 459 aa10.89□□□□□ -0.67
CLK3-220ENST00000567992 PTENP60484 403 aa10.89□□□□□ -0.67
CLK3-220ENST00000567992 TAP1Q03518 808 aa10.89□□□□□ -0.67
CLK3-220ENST00000567992 GRIN2CQ14957 1233 aa10.89□□□□□ -0.67
CLK3-220ENST00000567992 FAM43BQ6ZT52 329 aaPredicted RBP10.89□□□□□ -0.67
CLK3-220ENST00000567992 RNF149Q8NC42 400 aa10.89□□□□□ -0.67
CLK3-220ENST00000567992 LINC00301Q8NCQ3 95 aa10.89□□□□□ -0.67
CLK3-220ENST00000567992 MCPH1Q8NEM0 835 aa10.89□□□□□ -0.67
CLK3-220ENST00000567992 FAM161BQ96MY7 647 aa10.89□□□□□ -0.67
CLK3-220ENST00000567992 SCLT1Q96NL6 688 aa10.89□□□□□ -0.67
CLK3-220ENST00000567992 CLIC6Q96NY7 704 aa10.89□□□□□ -0.67
CLK3-220ENST00000567992 RAD9AQ99638 391 aa10.89□□□□□ -0.67
CLK3-220ENST00000567992 ADAM2Q99965 735 aa10.89□□□□□ -0.67
CLK3-220ENST00000567992 ZNF576Q9H609 170 aa10.89□□□□□ -0.67
CLK3-220ENST00000567992 BLOC1S4Q9NUP1 217 aa10.89□□□□□ -0.67
CLK3-220ENST00000567992 SRPRBQ9Y5M8 271 aaKnown RBP10.89□□□□□ -0.67
CLK3-220ENST00000567992 LINC01553A4QN01 128 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 ASAP2O43150 1006 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 UPP2O95045 317 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 SLC34A2O95436 690 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 LINC00271P0C7V0 271 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 SFPQP23246 707 aaKnown RBP eCLIP10.88□□□□□ -0.67
CLK3-220ENST00000567992 DDIT3P35638 169 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 SARSP49591 514 aaKnown RBP10.88□□□□□ -0.67
CLK3-220ENST00000567992 SLC12A3P55017 1021 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 FAM189BP81408 668 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 MBTD1Q05BQ5 628 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 POU5F1BQ06416 359 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 MAPK7Q13164 816 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 BECN1Q14457 450 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 MXD4Q14582 209 aaPredicted RBP10.88□□□□□ -0.67
CLK3-220ENST00000567992 KARSQ15046 597 aaKnown RBP10.88□□□□□ -0.67
CLK3-220ENST00000567992 ZRSR1Q15695 479 aaKnown RBP10.88□□□□□ -0.67
CLK3-220ENST00000567992 AMHR2Q16671 573 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 SPECC1Q5M775 1068 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 ODR4Q5SWX8 454 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 PPP2R2DQ66LE6 453 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 CDCA2Q69YH5 1023 aaPredicted RBP10.88□□□□□ -0.67
CLK3-220ENST00000567992 RINT1Q6NUQ1 792 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 C1orf186Q6ZWK4 172 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 MAEAQ7L5Y9 396 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 DAW1Q8N136 415 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 KCTD17Q8N5Z5 321 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 PRUNE2Q8WUY3 3088 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 SYMPKQ92797 1274 aaKnown RBP10.88□□□□□ -0.67
CLK3-220ENST00000567992 ZNF689Q96CS4 500 aaPredicted RBP10.88□□□□□ -0.67
CLK3-220ENST00000567992 EPSTI1Q96J88 318 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 PLIN2Q99541 437 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 NFKBIZQ9BYH8 718 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 CCSER1Q9C0I3 900 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 NT5C3AQ9H0P0 336 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 AGPAT5Q9NUQ2 364 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 TFIP11Q9UBB9 837 aaKnown RBP10.88□□□□□ -0.67
CLK3-220ENST00000567992 DNM3Q9UQ16 869 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 ATG2AQ2TAZ0 1938 aa10.88□□□□□ -0.67
CLK3-220ENST00000567992 ADGRA3Q8IWK6 1321 aa10.87□□□□□ -0.67
CLK3-220ENST00000567992 MYH11P35749 1972 aa10.87□□□□□ -0.67
CLK3-220ENST00000567992 DENND3A2RUS2 1198 aa10.87□□□□□ -0.67
CLK3-220ENST00000567992 EPOPA6NHQ4 379 aa10.87□□□□□ -0.67
CLK3-220ENST00000567992 DGKIO75912 1065 aa10.87□□□□□ -0.67
CLK3-220ENST00000567992 YEATS4O95619 227 aa10.87□□□□□ -0.67
CLK3-220ENST00000567992 ATF7P17544 494 aaPredicted RBP10.87□□□□□ -0.67
CLK3-220ENST00000567992 PLCG1P19174 1290 aa10.87□□□□□ -0.67
CLK3-220ENST00000567992 HOXA11P31270 313 aaPredicted RBP10.87□□□□□ -0.67
CLK3-220ENST00000567992 UBA7P41226 1012 aa10.87□□□□□ -0.67
CLK3-220ENST00000567992 PHKA2P46019 1235 aa10.87□□□□□ -0.67
CLK3-220ENST00000567992 GATMP50440 423 aa10.87□□□□□ -0.67
CLK3-220ENST00000567992 DNM1Q05193 864 aaKnown RBP10.87□□□□□ -0.67
CLK3-220ENST00000567992 STK38Q15208 465 aa10.87□□□□□ -0.67
CLK3-220ENST00000567992 FOXD4L6Q3SYB3 417 aaPredicted RBP10.87□□□□□ -0.67
CLK3-220ENST00000567992 FAM102BQ5T8I3 360 aa10.87□□□□□ -0.67
CLK3-220ENST00000567992 FOXD4L3Q6VB84 417 aaPredicted RBP10.87□□□□□ -0.67
CLK3-220ENST00000567992 SLC24A5Q71RS6 500 aa10.87□□□□□ -0.67
CLK3-220ENST00000567992 SRGAP1Q7Z6B7 1085 aa10.87□□□□□ -0.67
CLK3-220ENST00000567992 ZNF598Q86UK7 904 aaKnown RBP10.87□□□□□ -0.67
CLK3-220ENST00000567992 NPAS4Q8IUM7 802 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms