RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 LRRC55Q6ZSA7 311 aa21.02■□□□□ 0.96
CLN3-218ENST00000565688 NEK8Q86SG6 692 aa21.02■□□□□ 0.96
CLN3-218ENST00000565688 ZNF410Q86VK4 478 aa21.02■□□□□ 0.96
CLN3-218ENST00000565688 RNF169Q8NCN4 708 aa21.02■□□□□ 0.96
CLN3-218ENST00000565688 MRPL9Q9BYD2 267 aaKnown RBP21.02■□□□□ 0.96
CLN3-218ENST00000565688 NGRNQ9NPE2 291 aaKnown RBP21.02■□□□□ 0.96
CLN3-218ENST00000565688 TRIOO75962 3097 aa21.02■□□□□ 0.96
CLN3-218ENST00000565688 TMEM150BA6NC51 233 aa21.01■□□□□ 0.95
CLN3-218ENST00000565688 SLC37A4O43826 429 aa21.01■□□□□ 0.95
CLN3-218ENST00000565688 QARSP47897 775 aaKnown RBP21.01■□□□□ 0.95
CLN3-218ENST00000565688 ANAPC15P60006 121 aa21.01■□□□□ 0.95
CLN3-218ENST00000565688 ANKRD1Q15327 319 aa21.01■□□□□ 0.95
CLN3-218ENST00000565688 ZNF598Q86UK7 904 aaKnown RBP21.01■□□□□ 0.95
CLN3-218ENST00000565688 EXOC8Q8IYI6 725 aa21.01■□□□□ 0.95
CLN3-218ENST00000565688 TRAIPQ9BWF2 469 aa21.01■□□□□ 0.95
CLN3-218ENST00000565688 KCNMB3Q9NPA1 279 aa21.01■□□□□ 0.95
CLN3-218ENST00000565688 SPG21Q9NZD8 308 aa21.01■□□□□ 0.95
CLN3-218ENST00000565688 SUCLA2Q9P2R7 463 aaPredicted RBP21.01■□□□□ 0.95
CLN3-218ENST00000565688 BARX2Q9UMQ3 279 aaPredicted RBP21.01■□□□□ 0.95
CLN3-218ENST00000565688 PPME1Q9Y570 386 aa21.01■□□□□ 0.95
CLN3-218ENST00000565688 PER2O15055 1255 aa21■□□□□ 0.95
CLN3-218ENST00000565688 TBX3O15119 743 aa21■□□□□ 0.95
CLN3-218ENST00000565688 SKIP12755 728 aa21■□□□□ 0.95
CLN3-218ENST00000565688 FGFR4P22455 802 aa21■□□□□ 0.95
CLN3-218ENST00000565688 CLLU1OSQ5K130 101 aa21■□□□□ 0.95
CLN3-218ENST00000565688 ANO5Q75V66 913 aa21■□□□□ 0.95
CLN3-218ENST00000565688 WASF1Q92558 559 aa21■□□□□ 0.95
CLN3-218ENST00000565688 TCF25Q9BQ70 676 aa21■□□□□ 0.95
CLN3-218ENST00000565688 ENTPD7Q9NQZ7 604 aa21■□□□□ 0.95
CLN3-218ENST00000565688 CYP26B1Q9NR63 512 aa21■□□□□ 0.95
CLN3-218ENST00000565688 VAV3Q9UKW4 847 aa21■□□□□ 0.95
CLN3-218ENST00000565688 TPCN1Q9ULQ1 816 aa21■□□□□ 0.95
CLN3-218ENST00000565688 A0A087WZ62 844 aa20.99■□□□□ 0.95
CLN3-218ENST00000565688 CARNS1A5YM72 827 aa20.99■□□□□ 0.95
CLN3-218ENST00000565688 CSDE1O75534 798 aaKnown RBP20.99■□□□□ 0.95
CLN3-218ENST00000565688 HERC4Q5GLZ8 1057 aaPredicted RBP20.99■□□□□ 0.95
CLN3-218ENST00000565688 PLPP4Q5VZY2 271 aa20.99■□□□□ 0.95
CLN3-218ENST00000565688 RHPN2Q8IUC4 686 aa20.99■□□□□ 0.95
CLN3-218ENST00000565688 RNF135Q8IUD6 432 aa20.99■□□□□ 0.95
CLN3-218ENST00000565688 HELQQ8TDG4 1101 aa20.99■□□□□ 0.95
CLN3-218ENST00000565688 SLC7A3Q8WY07 619 aa20.99■□□□□ 0.95
CLN3-218ENST00000565688 SH2D3AQ9BRG2 576 aa20.99■□□□□ 0.95
CLN3-218ENST00000565688 FDXACB1Q9BRP7 624 aaPredicted RBP20.99■□□□□ 0.95
CLN3-218ENST00000565688 USP15Q9Y4E8 981 aaPredicted RBP20.99■□□□□ 0.95
CLN3-218ENST00000565688 EML1O00423 815 aa20.98■□□□□ 0.95
CLN3-218ENST00000565688 MARCH6O60337 910 aa20.98■□□□□ 0.95
CLN3-218ENST00000565688 CCNT1O60563 726 aaKnown RBP20.98■□□□□ 0.95
CLN3-218ENST00000565688 P4HBP07237 508 aaKnown RBP20.98■□□□□ 0.95
CLN3-218ENST00000565688 ATF7P17544 494 aaPredicted RBP20.98■□□□□ 0.95
CLN3-218ENST00000565688 PHKA2P46019 1235 aa20.98■□□□□ 0.95
CLN3-218ENST00000565688 TWF2Q6IBS0 349 aaKnown RBP20.98■□□□□ 0.95
CLN3-218ENST00000565688 TMEM184AQ6ZMB5 413 aa20.98■□□□□ 0.95
CLN3-218ENST00000565688 PIK3AP1Q6ZUJ8 805 aa20.98■□□□□ 0.95
CLN3-218ENST00000565688 ORC3Q9UBD5 711 aaPredicted RBP20.98■□□□□ 0.95
CLN3-218ENST00000565688 ALDH7A1P49419 539 aaKnown RBP20.97■□□□□ 0.95
CLN3-218ENST00000565688 PLA2G4FQ68DD2 849 aa20.97■□□□□ 0.95
CLN3-218ENST00000565688 CATSPER4Q7RTX7 472 aa20.97■□□□□ 0.95
CLN3-218ENST00000565688 TMC7Q7Z402 723 aa20.97■□□□□ 0.95
CLN3-218ENST00000565688 SLC39A11Q8N1S5 342 aa20.97■□□□□ 0.95
CLN3-218ENST00000565688 VN1R2Q8NFZ6 395 aa20.97■□□□□ 0.95
CLN3-218ENST00000565688 NLRP4Q96MN2 994 aa20.97■□□□□ 0.95
CLN3-218ENST00000565688 PHF7Q9BWX1 381 aaPredicted RBP20.97■□□□□ 0.95
CLN3-218ENST00000565688 MUTYHQ9UIF7 546 aa20.97■□□□□ 0.95
CLN3-218ENST00000565688 PIN4Q9Y237 131 aaKnown RBP20.97■□□□□ 0.95
CLN3-218ENST00000565688 LOC730098B7Z3J9 87 aa20.96■□□□□ 0.95
CLN3-218ENST00000565688 BAG4O95429 457 aaKnown RBP20.96■□□□□ 0.95
CLN3-218ENST00000565688 PBX3P40426 434 aa20.96■□□□□ 0.95
CLN3-218ENST00000565688 RFC5P40937 340 aa20.96■□□□□ 0.95
CLN3-218ENST00000565688 RAB27AP51159 221 aa20.96■□□□□ 0.95
CLN3-218ENST00000565688 POLGP54098 1239 aaPredicted RBP20.96■□□□□ 0.95
CLN3-218ENST00000565688 KCNC3Q14003 757 aa20.96■□□□□ 0.95
CLN3-218ENST00000565688 BMS1Q14692 1282 aaKnown RBP20.96■□□□□ 0.95
CLN3-218ENST00000565688 EPHA7Q15375 998 aa20.96■□□□□ 0.95
CLN3-218ENST00000565688 C4orf19Q8IY42 314 aa20.96■□□□□ 0.95
CLN3-218ENST00000565688 SLFN12Q8IYM2 578 aa20.96■□□□□ 0.95
CLN3-218ENST00000565688 OXER1Q8TDS5 423 aa20.96■□□□□ 0.95
CLN3-218ENST00000565688 CEP170P1Q96L14 293 aa20.96■□□□□ 0.95
CLN3-218ENST00000565688 BRMS1Q9HCU9 246 aa20.96■□□□□ 0.95
CLN3-218ENST00000565688 COL4A3BPQ9Y5P4 624 aa20.96■□□□□ 0.95
CLN3-218ENST00000565688 HIDE1A8MVS5 230 aa20.95■□□□□ 0.94
CLN3-218ENST00000565688 GAS2O43903 313 aaKnown RBP20.95■□□□□ 0.94
CLN3-218ENST00000565688 EIF5BO60841 1220 aaKnown RBP20.95■□□□□ 0.94
CLN3-218ENST00000565688 ZNF623O75123 536 aa20.95■□□□□ 0.94
CLN3-218ENST00000565688 CTDNEP1O95476 244 aa20.95■□□□□ 0.94
CLN3-218ENST00000565688 HOXB8P17481 243 aaPredicted RBP20.95■□□□□ 0.94
CLN3-218ENST00000565688 AK2P54819 239 aa20.95■□□□□ 0.94
CLN3-218ENST00000565688 NPEPPSP55786 919 aa20.95■□□□□ 0.94
CLN3-218ENST00000565688 RBM10P98175 930 aaKnown RBP20.95■□□□□ 0.94
CLN3-218ENST00000565688 SMC1AQ14683 1233 aaKnown RBP20.95■□□□□ 0.94
CLN3-218ENST00000565688 CBX2Q14781 532 aaPredicted RBP20.95■□□□□ 0.94
CLN3-218ENST00000565688 GLB1LQ6UWU2 654 aa20.95■□□□□ 0.94
CLN3-218ENST00000565688 OTUD6AQ7L8S5 288 aa20.95■□□□□ 0.94
CLN3-218ENST00000565688 KSR1Q8IVT5 923 aa20.95■□□□□ 0.94
CLN3-218ENST00000565688 PSPC1Q8WXF1 523 aaKnown RBP20.95■□□□□ 0.94
CLN3-218ENST00000565688 SUSD6Q92537 303 aa20.95■□□□□ 0.94
CLN3-218ENST00000565688 HAS1Q92839 578 aa20.95■□□□□ 0.94
CLN3-218ENST00000565688 DHX33Q9H6R0 707 aaKnown RBP20.95■□□□□ 0.94
CLN3-218ENST00000565688 GJB4Q9NTQ9 266 aa20.95■□□□□ 0.94
CLN3-218ENST00000565688 KRT2P35908 639 aa20.94■□□□□ 0.94
CLN3-218ENST00000565688 TECP42680 631 aa20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms