RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ASLP04424 464 aa6□□□□□ -1.45
VPS35-205ENST00000563984 TPM3P06753 285 aa6□□□□□ -1.45
VPS35-205ENST00000563984 KCNA2P16389 499 aa6□□□□□ -1.45
VPS35-205ENST00000563984 ZNF20P17024 532 aa6□□□□□ -1.45
VPS35-205ENST00000563984 ACVRL1P37023 503 aa6□□□□□ -1.45
VPS35-205ENST00000563984 TERF1P54274 439 aa6□□□□□ -1.45
VPS35-205ENST00000563984 EVA1CP58658 441 aa6□□□□□ -1.45
VPS35-205ENST00000563984 SAFB2Q14151 953 aaKnown RBP eCLIP6□□□□□ -1.45
VPS35-205ENST00000563984 CXXC5Q7LFL8 322 aaKnown RBP6□□□□□ -1.45
VPS35-205ENST00000563984 OTOP1Q7RTM1 612 aa6□□□□□ -1.45
VPS35-205ENST00000563984 RALYLQ86SE5 291 aaKnown RBP6□□□□□ -1.45
VPS35-205ENST00000563984 ZFPM1Q8IX07 1006 aa6□□□□□ -1.45
VPS35-205ENST00000563984 DLG3Q92796 817 aa6□□□□□ -1.45
VPS35-205ENST00000563984 WNK4Q96J92 1243 aa6□□□□□ -1.45
VPS35-205ENST00000563984 SAMD11Q96NU1 681 aa6□□□□□ -1.45
VPS35-205ENST00000563984 SEZ6LQ9BYH1 1024 aa6□□□□□ -1.45
VPS35-205ENST00000563984 ZHX3Q9H4I2 956 aa6□□□□□ -1.45
VPS35-205ENST00000563984 BTBD7Q9P203 1132 aa6□□□□□ -1.45
VPS35-205ENST00000563984 TCEAL9Q9UHQ7 104 aa6□□□□□ -1.45
VPS35-205ENST00000563984 ST6GALNAC2Q9UJ37 374 aa6□□□□□ -1.45
VPS35-205ENST00000563984 FBXO10Q9UK96 956 aa6□□□□□ -1.45
VPS35-205ENST00000563984 ZHX1Q9UKY1 873 aaPredicted RBP6□□□□□ -1.45
VPS35-205ENST00000563984 B3GALT1Q9Y5Z6 326 aa6□□□□□ -1.45
VPS35-205ENST00000563984 KIF16BQ96L93 1317 aa5.99□□□□□ -1.45
VPS35-205ENST00000563984 KLHL33A6NCF5 533 aa5.99□□□□□ -1.45
VPS35-205ENST00000563984 CYR61O00622 381 aa5.99□□□□□ -1.45
VPS35-205ENST00000563984 PRC1O43663 620 aa5.99□□□□□ -1.45
VPS35-205ENST00000563984 RFPL3O75679 317 aa5.99□□□□□ -1.45
VPS35-205ENST00000563984 NBPF7P0C2Y1 421 aaPredicted RBP5.99□□□□□ -1.45
VPS35-205ENST00000563984 TACR2P21452 398 aa5.99□□□□□ -1.45
VPS35-205ENST00000563984 PAX7P23759 505 aa5.99□□□□□ -1.45
VPS35-205ENST00000563984 SDHAP31040 664 aa5.99□□□□□ -1.45
VPS35-205ENST00000563984 ABCD1P33897 745 aa5.99□□□□□ -1.45
VPS35-205ENST00000563984 EPHB4P54760 987 aa5.99□□□□□ -1.45
VPS35-205ENST00000563984 POU5F1BQ06416 359 aa5.99□□□□□ -1.45
VPS35-205ENST00000563984 IFT88Q13099 833 aa5.99□□□□□ -1.45
VPS35-205ENST00000563984 SEC23AQ15436 765 aa5.99□□□□□ -1.45
VPS35-205ENST00000563984 PLEKHG6Q3KR16 790 aa5.99□□□□□ -1.45
VPS35-205ENST00000563984 ZCCHC8Q6NZY4 707 aaKnown RBP5.99□□□□□ -1.45
VPS35-205ENST00000563984 CC2D1AQ6P1N0 951 aaPredicted RBP5.99□□□□□ -1.45
VPS35-205ENST00000563984 UBE2Q1Q7Z7E8 422 aa5.99□□□□□ -1.45
VPS35-205ENST00000563984 LCA5Q86VQ0 697 aa5.99□□□□□ -1.45
VPS35-205ENST00000563984 TTC9BQ8N6N2 239 aa5.99□□□□□ -1.45
VPS35-205ENST00000563984 POLR3CQ9BUI4 534 aaPredicted RBP5.99□□□□□ -1.45
VPS35-205ENST00000563984 BOCQ9BWV1 1114 aa5.99□□□□□ -1.45
VPS35-205ENST00000563984 BTBD2Q9BX70 525 aa5.99□□□□□ -1.45
VPS35-205ENST00000563984 RETREG1Q9H6L5 497 aa5.99□□□□□ -1.45
VPS35-205ENST00000563984 KANSL2Q9H9L4 492 aa5.99□□□□□ -1.45
VPS35-205ENST00000563984 CGNQ9P2M7 1197 aaKnown RBP5.99□□□□□ -1.45
VPS35-205ENST00000563984 SUN2Q9UH99 717 aa5.99□□□□□ -1.45
VPS35-205ENST00000563984 KNSTRNQ9Y448 316 aa5.99□□□□□ -1.45
VPS35-205ENST00000563984 FOXP2O15409 715 aa5.98□□□□□ -1.45
VPS35-205ENST00000563984 OPA1O60313 960 aa5.98□□□□□ -1.45
VPS35-205ENST00000563984 CSF2RBP32927 897 aa5.98□□□□□ -1.45
VPS35-205ENST00000563984 MECP2P51608 486 aaKnown RBP5.98□□□□□ -1.45
VPS35-205ENST00000563984 EIF5P55010 431 aaKnown RBP5.98□□□□□ -1.45
VPS35-205ENST00000563984 IRF9Q00978 393 aa5.98□□□□□ -1.45
VPS35-205ENST00000563984 USP10Q14694 798 aaKnown RBP5.98□□□□□ -1.45
VPS35-205ENST00000563984 STILQ15468 1287 aa5.98□□□□□ -1.45
VPS35-205ENST00000563984 CTR9Q6PD62 1173 aa5.98□□□□□ -1.45
VPS35-205ENST00000563984 FILIP1Q7Z7B0 1213 aa5.98□□□□□ -1.45
VPS35-205ENST00000563984 LMNTD2Q8IXW0 634 aa5.98□□□□□ -1.45
VPS35-205ENST00000563984 SAMD3Q8N6K7 520 aa5.98□□□□□ -1.45
VPS35-205ENST00000563984 ASB15Q8WXK1 588 aa5.98□□□□□ -1.45
VPS35-205ENST00000563984 ERCC4Q92889 916 aaPredicted RBP5.98□□□□□ -1.45
VPS35-205ENST00000563984 NEUROD6Q96NK8 337 aa5.98□□□□□ -1.45
VPS35-205ENST00000563984 SSBP3Q9BWW4 388 aaPredicted RBP5.98□□□□□ -1.45
VPS35-205ENST00000563984 CARD11Q9BXL7 1154 aa5.98□□□□□ -1.45
VPS35-205ENST00000563984 LRRC27Q9C0I9 530 aa5.98□□□□□ -1.45
VPS35-205ENST00000563984 PIF1Q9H611 641 aa5.98□□□□□ -1.45
VPS35-205ENST00000563984 WDR26Q9H7D7 661 aa5.98□□□□□ -1.45
VPS35-205ENST00000563984 CHCHD3Q9NX63 227 aaKnown RBP5.98□□□□□ -1.45
VPS35-205ENST00000563984 UTP6Q9NYH9 597 aaKnown RBP5.98□□□□□ -1.45
VPS35-205ENST00000563984 PPP4R1LQ9P1A2 415 aa5.98□□□□□ -1.45
VPS35-205ENST00000563984 SAMD15Q9P1V8 674 aa5.98□□□□□ -1.45
VPS35-205ENST00000563984 G3BP2Q9UN86 482 aaKnown RBP5.98□□□□□ -1.45
VPS35-205ENST00000563984 ASB1Q9Y576 335 aa5.98□□□□□ -1.45
VPS35-205ENST00000563984 ESYT3A0FGR9 886 aa5.97□□□□□ -1.45
VPS35-205ENST00000563984 NPEPPSL1A6NEC2 478 aa5.97□□□□□ -1.45
VPS35-205ENST00000563984 CCP110O43303 1012 aa5.97□□□□□ -1.45
VPS35-205ENST00000563984 DNAJC8O75937 253 aaPredicted RBP5.97□□□□□ -1.45
VPS35-205ENST00000563984 ASMTLO95671 621 aa5.97□□□□□ -1.45
VPS35-205ENST00000563984 MPIG6BO95866 241 aa5.97□□□□□ -1.45
VPS35-205ENST00000563984 S100BP04271 92 aaPredicted RBP5.97□□□□□ -1.45
VPS35-205ENST00000563984 MMEP08473 750 aa5.97□□□□□ -1.45
VPS35-205ENST00000563984 CCDC175P0C221 793 aa5.97□□□□□ -1.45
VPS35-205ENST00000563984 ZBTB48P10074 688 aaPredicted RBP5.97□□□□□ -1.45
VPS35-205ENST00000563984 MC4RP32245 332 aa5.97□□□□□ -1.45
VPS35-205ENST00000563984 ECE1P42892 770 aa5.97□□□□□ -1.45
VPS35-205ENST00000563984 TOP3AQ13472 1001 aaPredicted RBP5.97□□□□□ -1.45
VPS35-205ENST00000563984 DCTN1Q14203 1278 aa5.97□□□□□ -1.45
VPS35-205ENST00000563984 KCTD2Q14681 263 aa5.97□□□□□ -1.45
VPS35-205ENST00000563984 TCEA2Q15560 299 aa5.97□□□□□ -1.45
VPS35-205ENST00000563984 MAPRE1Q15691 268 aaKnown RBP5.97□□□□□ -1.45
VPS35-205ENST00000563984 WDR72Q3MJ13 1102 aa5.97□□□□□ -1.45
VPS35-205ENST00000563984 RNF187Q5TA31 235 aaPredicted RBP5.97□□□□□ -1.45
VPS35-205ENST00000563984 SLFN13Q68D06 897 aa5.97□□□□□ -1.45
VPS35-205ENST00000563984 OTUD6AQ7L8S5 288 aa5.97□□□□□ -1.45
VPS35-205ENST00000563984 HOMER1Q86YM7 354 aa5.97□□□□□ -1.45
VPS35-205ENST00000563984 IFNL2Q8IZJ0 200 aa5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms