RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 SCLYQ96I15 445 aa11.15□□□□□ -0.62
USP3-216ENST00000559873 PPP1R16BQ96T49 567 aa11.15□□□□□ -0.62
USP3-216ENST00000559873 OSMRQ99650 979 aa11.15□□□□□ -0.62
USP3-216ENST00000559873 NFKBIZQ9BYH8 718 aa11.15□□□□□ -0.62
USP3-216ENST00000559873 PARVGQ9HBI0 331 aa11.15□□□□□ -0.62
USP3-216ENST00000559873 IL23AQ9NPF7 189 aa11.15□□□□□ -0.62
USP3-216ENST00000559873 A0A087X0B3 334 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 H0YGN5 161 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 GPR182O15218 404 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 ERLIN2O94905 339 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 CHRNA1P02708 482 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 CXCL10P02778 98 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 SRGAP2CP0DJJ0 459 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 GHRP10912 638 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 PLS3P13797 630 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 CSF2RAP15509 400 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 GAP43P17677 238 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 GLRA2P23416 452 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 EIF4BP23588 611 aaKnown RBP11.14□□□□□ -0.63
USP3-216ENST00000559873 ITGB8P26012 769 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 EFNA5P52803 228 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 MDM2Q00987 491 aaPredicted RBP11.14□□□□□ -0.63
USP3-216ENST00000559873 RAD51AP2Q09MP3 1159 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 CAPSQ13938 189 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 FBXO47Q5MNV8 452 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 CNKSR3Q6P9H4 555 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 TRAF7Q6Q0C0 670 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 CNNM3Q8NE01 707 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 CCDC47Q96A33 483 aaKnown RBP11.14□□□□□ -0.63
USP3-216ENST00000559873 REEP2Q9BRK0 252 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 FTHL17Q9BXU8 183 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 IFIH1Q9BYX4 1025 aaKnown RBP11.14□□□□□ -0.63
USP3-216ENST00000559873 ADAMTS10Q9H324 1103 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 GPRC5CQ9NQ84 441 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 KBTBD4Q9NVX7 518 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 SEL1LQ9UBV2 794 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 EVPLQ92817 2033 aa11.14□□□□□ -0.63
USP3-216ENST00000559873 A0A087WZ62 844 aa11.13□□□□□ -0.63
USP3-216ENST00000559873 CCDC169A6NNP5 214 aa11.13□□□□□ -0.63
USP3-216ENST00000559873 ACTN4O43707 911 aaKnown RBP11.13□□□□□ -0.63
USP3-216ENST00000559873 GPR32O75388 356 aa11.13□□□□□ -0.63
USP3-216ENST00000559873 PRPF40AO75400 957 aaKnown RBP11.13□□□□□ -0.63
USP3-216ENST00000559873 BAIAP3O94812 1187 aa11.13□□□□□ -0.63
USP3-216ENST00000559873 DARSP14868 501 aaKnown RBP11.13□□□□□ -0.63
USP3-216ENST00000559873 MAGEA10P43363 369 aaPredicted RBP11.13□□□□□ -0.63
USP3-216ENST00000559873 PTENP60484 403 aa11.13□□□□□ -0.63
USP3-216ENST00000559873 ASIC1P78348 528 aa11.13□□□□□ -0.63
USP3-216ENST00000559873 NCBP1Q09161 790 aaKnown RBP11.13□□□□□ -0.63
USP3-216ENST00000559873 LPIN1Q14693 890 aa11.13□□□□□ -0.63
USP3-216ENST00000559873 MBTPS1Q14703 1052 aa11.13□□□□□ -0.63
USP3-216ENST00000559873 KRBA2Q6ZNG9 492 aa11.13□□□□□ -0.63
USP3-216ENST00000559873 DYMQ7RTS9 669 aa11.13□□□□□ -0.63
USP3-216ENST00000559873 CATSPER4Q7RTX7 472 aa11.13□□□□□ -0.63
USP3-216ENST00000559873 DEFB128Q7Z7B8 93 aa11.13□□□□□ -0.63
USP3-216ENST00000559873 IFNLR1Q8IU57 520 aaPredicted RBP11.13□□□□□ -0.63
USP3-216ENST00000559873 CCDC65Q8IXS2 484 aa11.13□□□□□ -0.63
USP3-216ENST00000559873 ASAP3Q8TDY4 903 aa11.13□□□□□ -0.63
USP3-216ENST00000559873 SPIRE2Q8WWL2 714 aa11.13□□□□□ -0.63
USP3-216ENST00000559873 DDX12PQ92771 950 aa11.13□□□□□ -0.63
USP3-216ENST00000559873 PRIMPOLQ96LW4 560 aa11.13□□□□□ -0.63
USP3-216ENST00000559873 TIGD1Q96MW7 591 aa11.13□□□□□ -0.63
USP3-216ENST00000559873 FDXACB1Q9BRP7 624 aaPredicted RBP11.13□□□□□ -0.63
USP3-216ENST00000559873 UBE2OQ9C0C9 1292 aaKnown RBP11.13□□□□□ -0.63
USP3-216ENST00000559873 GOLPH3LQ9H4A5 285 aa11.13□□□□□ -0.63
USP3-216ENST00000559873 ZHX3Q9H4I2 956 aa11.13□□□□□ -0.63
USP3-216ENST00000559873 KMT5AQ9NQR1 393 aa11.13□□□□□ -0.63
USP3-216ENST00000559873 RNF216Q9NWF9 866 aaPredicted RBP11.13□□□□□ -0.63
USP3-216ENST00000559873 SERTAD1Q9UHV2 236 aa11.13□□□□□ -0.63
USP3-216ENST00000559873 MYMKA6NI61 221 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 INO80B-WBP1J3KQ70 363 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 K7ENM7 598 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 GTPBP6O43824 516 aaPredicted RBP11.12□□□□□ -0.63
USP3-216ENST00000559873 NBNO60934 754 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 ZNF202O95125 648 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 IDEP14735 1019 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 ZSCAN20P17040 1043 aaPredicted RBP11.12□□□□□ -0.63
USP3-216ENST00000559873 PTMSP20962 102 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 CD52P31358 61 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 KCNJ6P48051 423 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 ZNF131P52739 623 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 PEX3P56589 373 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 CACNB1Q02641 598 aaPredicted RBP11.12□□□□□ -0.63
USP3-216ENST00000559873 NFX1Q12986 1120 aaKnown RBP11.12□□□□□ -0.63
USP3-216ENST00000559873 MAPK7Q13164 816 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 GIT2Q14161 759 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 IKBKEQ14164 716 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 MAPK6Q16659 721 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 TMEM132AQ24JP5 1023 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 PLEKHG4Q58EX7 1191 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 ARSHQ5FYA8 562 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 PRPF38BQ5VTL8 546 aaKnown RBP11.12□□□□□ -0.63
USP3-216ENST00000559873 CDCA2Q69YH5 1023 aaPredicted RBP11.12□□□□□ -0.63
USP3-216ENST00000559873 CNNM4Q6P4Q7 775 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 STXBP4Q6ZWJ1 553 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 KSR1Q8IVT5 923 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 FAM178BQ8IXR5 827 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 DAW1Q8N136 415 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 MYCT1Q8N699 235 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 LRRC15Q8TF66 581 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 TMEM40Q8WWA1 233 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms