RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 DHRS4L2Q6PKH6 230 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 SLC30A10Q6XR72 485 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 CNGA4Q8IV77 575 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 BRSK2Q8IWQ3 736 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 VPS52Q8N1B4 723 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 SCG3Q8WXD2 468 aaKnown RBP9.07□□□□□ -0.96
USP3-211ENST00000559257 TMA16Q96EY4 203 aaKnown RBP9.07□□□□□ -0.96
USP3-211ENST00000559257 LRMDAQ9H2I8 198 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 RXFP1Q9HBX9 757 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 ZSWIM6Q9HCJ5 1215 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 POLD4Q9HCU8 107 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 TXLNGQ9NUQ3 528 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 DMGDHQ9UI17 866 aaKnown RBP9.07□□□□□ -0.96
USP3-211ENST00000559257 TUBE1Q9UJT0 475 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 COQ6Q9Y2Z9 468 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 A0A0U1RQJ8 604 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 CCDC169A6NNP5 214 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 SOBPA7XYQ1 873 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 ADD1P35611 737 aaKnown RBP9.07□□□□□ -0.96
USP3-211ENST00000559257 UBA7P41226 1012 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 ATN1P54259 1190 aaPredicted RBP9.07□□□□□ -0.96
USP3-211ENST00000559257 NAA20P61599 178 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 LPIN1Q14693 890 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 TGFBIQ15582 683 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 NFE2L2Q16236 605 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 PAF1Q8N7H5 531 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 PIP4K2CQ8TBX8 421 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 INPP5DQ92835 1189 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 PGBD4Q96DM1 585 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 DHRS9Q9BPW9 319 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 DNAI2Q9GZS0 605 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 TBK1Q9UHD2 729 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 LZTS1Q9Y250 596 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 MROH2AA6NES4 1674 aa9.06□□□□□ -0.96
USP3-211ENST00000559257 C2orf81A6NN90 581 aa9.06□□□□□ -0.96
USP3-211ENST00000559257 SYCE1LA8MT33 242 aa9.06□□□□□ -0.96
USP3-211ENST00000559257 KPNA6O60684 536 aa9.06□□□□□ -0.96
USP3-211ENST00000559257 BAIAP3O94812 1187 aa9.06□□□□□ -0.96
USP3-211ENST00000559257 ATP1A1P05023 1023 aaKnown RBP9.06□□□□□ -0.96
USP3-211ENST00000559257 S100A6P06703 90 aa9.06□□□□□ -0.96
USP3-211ENST00000559257 HOXB1P14653 301 aaPredicted RBP9.06□□□□□ -0.96
USP3-211ENST00000559257 PCYT1AP49585 367 aa9.06□□□□□ -0.96
USP3-211ENST00000559257 EIF2B2P49770 351 aaKnown RBP9.06□□□□□ -0.96
USP3-211ENST00000559257 KPNA1P52294 538 aaPredicted RBP9.06□□□□□ -0.96
USP3-211ENST00000559257 CDK18Q07002 472 aa9.06□□□□□ -0.96
USP3-211ENST00000559257 LONRF1Q17RB8 773 aa9.06□□□□□ -0.96
USP3-211ENST00000559257 ZNF518AQ6AHZ1 1483 aa9.06□□□□□ -0.96
USP3-211ENST00000559257 NIPAL1Q6NVV3 410 aa9.06□□□□□ -0.96
USP3-211ENST00000559257 LARP1Q6PKG0 1096 aaKnown RBP9.06□□□□□ -0.96
USP3-211ENST00000559257 KIF2BQ8N4N8 673 aa9.06□□□□□ -0.96
USP3-211ENST00000559257 LILRB4Q8NHJ6 448 aa9.06□□□□□ -0.96
USP3-211ENST00000559257 NKX2-3Q8TAU0 364 aa9.06□□□□□ -0.96
USP3-211ENST00000559257 GIPC3Q8TF64 312 aa9.06□□□□□ -0.96
USP3-211ENST00000559257 AIDAQ96BJ3 306 aa9.06□□□□□ -0.96
USP3-211ENST00000559257 FBXL18Q96ME1 805 aa9.06□□□□□ -0.96
USP3-211ENST00000559257 ZNF184Q99676 751 aaPredicted RBP9.06□□□□□ -0.96
USP3-211ENST00000559257 LRRC1Q9BTT6 524 aa9.06□□□□□ -0.96
USP3-211ENST00000559257 DDX23Q9BUQ8 820 aaKnown RBP9.06□□□□□ -0.96
USP3-211ENST00000559257 API5Q9BZZ5 524 aaKnown RBP9.06□□□□□ -0.96
USP3-211ENST00000559257 TELO2Q9Y4R8 837 aa9.06□□□□□ -0.96
USP3-211ENST00000559257 CYP46A1Q9Y6A2 500 aa9.06□□□□□ -0.96
USP3-211ENST00000559257 A0A0G2JS52 829 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 PDE2AO00408 941 aaPredicted RBP9.05□□□□□ -0.96
USP3-211ENST00000559257 ALOX15BO15296 676 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 SNX3O60493 162 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 MFAP3LO75121 409 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 SEC24DO94855 1032 aaPredicted RBP9.05□□□□□ -0.96
USP3-211ENST00000559257 UNC5CO95185 931 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 CSPG5O95196 566 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 CSTF2P33240 577 aaKnown RBP eCLIP9.05□□□□□ -0.96
USP3-211ENST00000559257 HOXD13P35453 343 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 PPARGP37231 505 aaPredicted RBP9.05□□□□□ -0.96
USP3-211ENST00000559257 MAP3K10Q02779 954 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 C2orf54Q08AI8 447 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 DNAJC3Q13217 504 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 GRM2Q14416 872 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 NR1I3Q14994 352 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 TNIP1Q15025 636 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 ANKRD1Q15327 319 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 SGO2Q562F6 1265 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 NAALADL2Q58DX5 795 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 AKAP4Q5JQC9 854 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 HAUS3Q68CZ6 603 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 ANO5Q75V66 913 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 MIGA2Q7L4E1 593 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 TMC7Q7Z402 723 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 CYP2U1Q7Z449 544 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 CLVS1Q8IUQ0 354 aaPredicted RBP9.05□□□□□ -0.96
USP3-211ENST00000559257 ELMOD1Q8N336 334 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 CPSF7Q8N684 471 aaKnown RBP9.05□□□□□ -0.96
USP3-211ENST00000559257 NGDNQ8NEJ9 315 aaKnown RBP9.05□□□□□ -0.96
USP3-211ENST00000559257 EXD1Q8NHP7 514 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 RPGRQ92834 1020 aaKnown RBP9.05□□□□□ -0.96
USP3-211ENST00000559257 UTP4Q969X6 686 aaKnown RBP9.05□□□□□ -0.96
USP3-211ENST00000559257 NMD3Q96D46 503 aaKnown RBP9.05□□□□□ -0.96
USP3-211ENST00000559257 CDCA7Q9BWT1 371 aaPredicted RBP9.05□□□□□ -0.96
USP3-211ENST00000559257 HACD3Q9P035 362 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 UVRAGQ9P2Y5 699 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 CNOT8Q9UFF9 292 aaKnown RBP9.05□□□□□ -0.96
USP3-211ENST00000559257 FAF1Q9UNN5 650 aaPredicted RBP9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms