RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 DYDC1Q8WWB3 177 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 LZTS2Q9BRK4 669 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 EPB41L4BQ9H329 900 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 KCNQ5Q9NR82 932 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 DNAJC12Q9UKB3 198 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.36□□□□□ -0.27
LDLR-205ENST00000557933 DAAM1Q9Y4D1 1078 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 FAM86B1E9PN63 330 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 DDX39AO00148 427 aaKnown RBP13.36□□□□□ -0.27
LDLR-205ENST00000557933 EML1O00423 815 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 GH1P01241 217 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 FAM86B2P0C5J1 330 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 SLC12A3P55017 1021 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 NEDD9Q14511 834 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 EPHA7Q15375 998 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 DOK7Q18PE1 504 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 HP1BP3Q5SSJ5 553 aaPredicted RBP13.36□□□□□ -0.27
LDLR-205ENST00000557933 MYCT1Q8N699 235 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 CCDC26Q8TAB7 109 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 ASTN1O14525 1302 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 RGS16O15492 202 aaPredicted RBP13.36□□□□□ -0.27
LDLR-205ENST00000557933 ZNF543Q08ER8 600 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 PSMD2Q13200 908 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 CCT6BQ92526 530 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 HOOK2Q96ED9 719 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 PBKQ96KB5 322 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 ANO3Q9BYT9 981 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 INTS9Q9NV88 658 aaKnown RBP13.36□□□□□ -0.27
LDLR-205ENST00000557933 FGFR1OP2Q9NVK5 253 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 CTTNBP2NLQ9P2B4 639 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 PNMA3Q9UL41 463 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 PNMA6FA0A0J9YX94 578 aa13.35□□□□□ -0.27
LDLR-205ENST00000557933 POLRMTO00411 1230 aaKnown RBP13.35□□□□□ -0.27
LDLR-205ENST00000557933 GDF11O95390 407 aa13.35□□□□□ -0.27
LDLR-205ENST00000557933 ZBTB48P10074 688 aaPredicted RBP13.35□□□□□ -0.27
LDLR-205ENST00000557933 SSTR3P32745 418 aaPredicted RBP13.35□□□□□ -0.27
LDLR-205ENST00000557933 PEX19P40855 299 aa13.35□□□□□ -0.27
LDLR-205ENST00000557933 STAT1P42224 750 aa13.35□□□□□ -0.27
LDLR-205ENST00000557933 RPL21P46778 160 aaKnown RBP13.35□□□□□ -0.27
LDLR-205ENST00000557933 PMS2P54278 862 aa13.35□□□□□ -0.27
LDLR-205ENST00000557933 DENND2CQ68D51 928 aa13.35□□□□□ -0.27
LDLR-205ENST00000557933 TTC27Q6P3X3 843 aa13.35□□□□□ -0.27
LDLR-205ENST00000557933 CAPN12Q6ZSI9 719 aa13.35□□□□□ -0.27
LDLR-205ENST00000557933 ZNF804AQ7Z570 1209 aa13.35□□□□□ -0.27
LDLR-205ENST00000557933 JAMLQ86YT9 394 aa13.35□□□□□ -0.27
LDLR-205ENST00000557933 CTNNBL1Q8WYA6 563 aaPredicted RBP13.35□□□□□ -0.27
LDLR-205ENST00000557933 IQCDQ96DY2 449 aa13.35□□□□□ -0.27
LDLR-205ENST00000557933 CEP63Q96MT8 703 aa13.35□□□□□ -0.27
LDLR-205ENST00000557933 KCNK9Q9NPC2 374 aa13.35□□□□□ -0.27
LDLR-205ENST00000557933 MCM8Q9UJA3 840 aa13.35□□□□□ -0.27
LDLR-205ENST00000557933 NEBLO76041 1014 aa13.35□□□□□ -0.27
LDLR-205ENST00000557933 BAG6P46379 1132 aa13.35□□□□□ -0.27
LDLR-205ENST00000557933 DLG4P78352 724 aa13.35□□□□□ -0.27
LDLR-205ENST00000557933 ELF3P78545 371 aaPredicted RBP13.35□□□□□ -0.27
LDLR-205ENST00000557933 RNASELQ05823 741 aaKnown RBP13.35□□□□□ -0.27
LDLR-205ENST00000557933 MTM1Q13496 603 aa13.35□□□□□ -0.27
LDLR-205ENST00000557933 CCDC197Q8NCU1 140 aa13.35□□□□□ -0.27
LDLR-205ENST00000557933 SLC17A8Q8NDX2 589 aa13.35□□□□□ -0.27
LDLR-205ENST00000557933 NUCKS1Q9H1E3 243 aaKnown RBP13.35□□□□□ -0.27
LDLR-205ENST00000557933 ZNF287Q9HBT7 754 aa13.35□□□□□ -0.27
LDLR-205ENST00000557933 NOD2Q9HC29 1040 aa13.35□□□□□ -0.27
LDLR-205ENST00000557933 DAGLAQ9Y4D2 1042 aa13.35□□□□□ -0.27
LDLR-205ENST00000557933 COL11A2P13942 1736 aaPredicted RBP13.34□□□□□ -0.27
LDLR-205ENST00000557933 TBCAO75347 108 aaKnown RBP13.34□□□□□ -0.27
LDLR-205ENST00000557933 PIAS1O75925 651 aa13.34□□□□□ -0.27
LDLR-205ENST00000557933 UBOX5O94941 541 aa13.34□□□□□ -0.27
LDLR-205ENST00000557933 MRPL12P52815 198 aaKnown RBP13.34□□□□□ -0.27
LDLR-205ENST00000557933 EPC2Q52LR7 807 aa13.34□□□□□ -0.27
LDLR-205ENST00000557933 COBLL1Q53SF7 1204 aa13.34□□□□□ -0.27
LDLR-205ENST00000557933 LLGL2Q6P1M3 1020 aa13.34□□□□□ -0.27
LDLR-205ENST00000557933 ATG4AQ8WYN0 398 aa13.34□□□□□ -0.27
LDLR-205ENST00000557933 RUBCNQ92622 972 aa13.34□□□□□ -0.27
LDLR-205ENST00000557933 SYN2Q92777 582 aaPredicted RBP13.34□□□□□ -0.27
LDLR-205ENST00000557933 RPGRQ92834 1020 aaKnown RBP13.34□□□□□ -0.27
LDLR-205ENST00000557933 PAIP2Q9BPZ3 127 aaKnown RBP13.34□□□□□ -0.27
LDLR-205ENST00000557933 ADAM7Q9H2U9 754 aa13.34□□□□□ -0.27
LDLR-205ENST00000557933 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.34□□□□□ -0.27
LDLR-205ENST00000557933 DNM3Q9UQ16 869 aa13.34□□□□□ -0.27
LDLR-205ENST00000557933 CCDC88AQ3V6T2 1871 aa13.34□□□□□ -0.27
LDLR-205ENST00000557933 FOXN3O00409 490 aaPredicted RBP13.34□□□□□ -0.27
LDLR-205ENST00000557933 SPATA31C1P0DKV0 1188 aa13.34□□□□□ -0.27
LDLR-205ENST00000557933 HOXA10P31260 410 aaPredicted RBP13.34□□□□□ -0.27
LDLR-205ENST00000557933 PPP2R5AQ15172 486 aa13.34□□□□□ -0.27
LDLR-205ENST00000557933 PREPLQ4J6C6 727 aaPredicted RBP13.34□□□□□ -0.27
LDLR-205ENST00000557933 YTHDF3Q7Z739 585 aaKnown RBP13.34□□□□□ -0.27
LDLR-205ENST00000557933 VPS36Q86VN1 386 aa13.34□□□□□ -0.27
LDLR-205ENST00000557933 NEK9Q8TD19 979 aa13.34□□□□□ -0.27
LDLR-205ENST00000557933 C1orf54Q8WWF1 131 aa13.34□□□□□ -0.27
LDLR-205ENST00000557933 ZNF219Q9P2Y4 722 aaPredicted RBP13.34□□□□□ -0.27
LDLR-205ENST00000557933 ZBTB21Q9ULJ3 1066 aa13.34□□□□□ -0.27
LDLR-205ENST00000557933 MAST2Q6P0Q8 1798 aa13.34□□□□□ -0.27
LDLR-205ENST00000557933 ZBTB5O15062 677 aa13.33□□□□□ -0.27
LDLR-205ENST00000557933 LDHCP07864 332 aa13.33□□□□□ -0.27
LDLR-205ENST00000557933 ZNF76P36508 570 aa13.33□□□□□ -0.27
LDLR-205ENST00000557933 GSTO1P78417 241 aa13.33□□□□□ -0.27
LDLR-205ENST00000557933 ARHGAP4P98171 946 aa13.33□□□□□ -0.27
LDLR-205ENST00000557933 BIRC3Q13489 604 aa13.33□□□□□ -0.27
LDLR-205ENST00000557933 SLC15A2Q16348 729 aa13.33□□□□□ -0.27
LDLR-205ENST00000557933 PRR5LQ6MZQ0 368 aa13.33□□□□□ -0.27
LDLR-205ENST00000557933 LRIG3Q6UXM1 1119 aa13.33□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms