RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 DNAJC10Q8IXB1 793 aa5.64□□□□□ -1.51
SCFD1-219ENST00000556413 RPUSD2Q8IZ73 545 aaKnown RBP5.64□□□□□ -1.51
SCFD1-219ENST00000556413 LILRB2Q8N423 598 aa5.64□□□□□ -1.51
SCFD1-219ENST00000556413 C16orf92Q96LL3 132 aa5.64□□□□□ -1.51
SCFD1-219ENST00000556413 WDR92Q96MX6 357 aa5.64□□□□□ -1.51
SCFD1-219ENST00000556413 TTPALQ9BTX7 342 aa5.64□□□□□ -1.51
SCFD1-219ENST00000556413 HAPLN2Q9GZV7 340 aa5.64□□□□□ -1.51
SCFD1-219ENST00000556413 NRDE2Q9H7Z3 1164 aa5.64□□□□□ -1.51
SCFD1-219ENST00000556413 POLR3BQ9NW08 1133 aaPredicted RBP5.64□□□□□ -1.51
SCFD1-219ENST00000556413 PTPDC1A2A3K4 754 aa5.63□□□□□ -1.51
SCFD1-219ENST00000556413 KLRG2A4D1S0 409 aaPredicted RBP5.63□□□□□ -1.51
SCFD1-219ENST00000556413 B4E1Z4 1266 aa5.63□□□□□ -1.51
SCFD1-219ENST00000556413 FAM20BO75063 409 aa5.63□□□□□ -1.51
SCFD1-219ENST00000556413 CYP17A1P05093 508 aa5.63□□□□□ -1.51
SCFD1-219ENST00000556413 PTX3P26022 381 aaPredicted RBP5.63□□□□□ -1.51
SCFD1-219ENST00000556413 SMAD3P84022 425 aaKnown RBP5.63□□□□□ -1.51
SCFD1-219ENST00000556413 COL10A1Q03692 680 aa5.63□□□□□ -1.51
SCFD1-219ENST00000556413 FKBP15Q5T1M5 1219 aa5.63□□□□□ -1.51
SCFD1-219ENST00000556413 BMP8AQ7Z5Y6 402 aa5.63□□□□□ -1.51
SCFD1-219ENST00000556413 ELOA2Q8IYF1 753 aaPredicted RBP5.63□□□□□ -1.51
SCFD1-219ENST00000556413 KIAA1958Q8N8K9 716 aa5.63□□□□□ -1.51
SCFD1-219ENST00000556413 TUBGCP5Q96RT8 1024 aa5.63□□□□□ -1.51
SCFD1-219ENST00000556413 PCIF1Q9H4Z3 704 aa5.63□□□□□ -1.51
SCFD1-219ENST00000556413 DNAI1Q9UI46 699 aa5.63□□□□□ -1.51
SCFD1-219ENST00000556413 RCAN3Q9UKA8 241 aa5.63□□□□□ -1.51
SCFD1-219ENST00000556413 JUNP05412 331 aaKnown RBP5.62□□□□□ -1.51
SCFD1-219ENST00000556413 HNRNPLP14866 589 aaKnown RBP eCLIP5.62□□□□□ -1.51
SCFD1-219ENST00000556413 IGFALSP35858 605 aa5.62□□□□□ -1.51
SCFD1-219ENST00000556413 MYBPC3Q14896 1274 aa5.62□□□□□ -1.51
SCFD1-219ENST00000556413 C1QL3Q5VWW1 255 aa5.62□□□□□ -1.51
SCFD1-219ENST00000556413 KRT40Q6A162 431 aa5.62□□□□□ -1.51
SCFD1-219ENST00000556413 LAIR1Q6GTX8 287 aa5.62□□□□□ -1.51
SCFD1-219ENST00000556413 MFSD5Q6N075 450 aa5.62□□□□□ -1.51
SCFD1-219ENST00000556413 HTR3DQ70Z44 454 aa5.62□□□□□ -1.51
SCFD1-219ENST00000556413 MRGPREQ86SM8 312 aa5.62□□□□□ -1.51
SCFD1-219ENST00000556413 HAS1Q92839 578 aa5.62□□□□□ -1.51
SCFD1-219ENST00000556413 MNTQ99583 582 aa5.62□□□□□ -1.51
SCFD1-219ENST00000556413 TNPO3Q9Y5L0 923 aaKnown RBP5.62□□□□□ -1.51
SCFD1-219ENST00000556413 NISCHQ9Y2I1 1504 aa5.62□□□□□ -1.51
SCFD1-219ENST00000556413 TMEM191CA6NGB0 347 aa5.61□□□□□ -1.51
SCFD1-219ENST00000556413 H7C1D1 291 aa5.61□□□□□ -1.51
SCFD1-219ENST00000556413 DNAJC8O75937 253 aaPredicted RBP5.61□□□□□ -1.51
SCFD1-219ENST00000556413 PTGS2P35354 604 aa5.61□□□□□ -1.51
SCFD1-219ENST00000556413 BCAR1P56945 870 aa5.61□□□□□ -1.51
SCFD1-219ENST00000556413 ZNF460Q14592 562 aa5.61□□□□□ -1.51
SCFD1-219ENST00000556413 EPHA7Q15375 998 aa5.61□□□□□ -1.51
SCFD1-219ENST00000556413 ZNF174Q15697 407 aa5.61□□□□□ -1.51
SCFD1-219ENST00000556413 RABL3Q5HYI8 236 aa5.61□□□□□ -1.51
SCFD1-219ENST00000556413 NME9Q86XW9 330 aa5.61□□□□□ -1.51
SCFD1-219ENST00000556413 MB21D1Q8N884 522 aa5.61□□□□□ -1.51
SCFD1-219ENST00000556413 SLC25A43Q8WUT9 341 aaPredicted RBP5.61□□□□□ -1.51
SCFD1-219ENST00000556413 ATXN2LQ8WWM7 1075 aaKnown RBP5.61□□□□□ -1.51
SCFD1-219ENST00000556413 RPGRQ92834 1020 aaKnown RBP5.61□□□□□ -1.51
SCFD1-219ENST00000556413 PGBD4Q96DM1 585 aa5.61□□□□□ -1.51
SCFD1-219ENST00000556413 ZNF512Q96ME7 567 aaPredicted RBP5.61□□□□□ -1.51
SCFD1-219ENST00000556413 CABP5Q9NP86 173 aa5.61□□□□□ -1.51
SCFD1-219ENST00000556413 TRPS1Q9UHF7 1281 aa5.61□□□□□ -1.51
SCFD1-219ENST00000556413 GOLGA6L6A8MZA4 724 aa5.6□□□□□ -1.51
SCFD1-219ENST00000556413 DAPK3O43293 454 aa5.6□□□□□ -1.51
SCFD1-219ENST00000556413 PPFIA2O75334 1257 aa5.6□□□□□ -1.51
SCFD1-219ENST00000556413 ASLP04424 464 aa5.6□□□□□ -1.51
SCFD1-219ENST00000556413 KIR2DL3P43628 341 aa5.6□□□□□ -1.51
SCFD1-219ENST00000556413 FNDC3BQ53EP0 1204 aaKnown RBP5.6□□□□□ -1.51
SCFD1-219ENST00000556413 SOGA3Q5TF21 947 aa5.6□□□□□ -1.51
SCFD1-219ENST00000556413 KANSL1Q7Z3B3 1105 aa5.6□□□□□ -1.51
SCFD1-219ENST00000556413 MDGA1Q8NFP4 955 aa5.6□□□□□ -1.51
SCFD1-219ENST00000556413 PMFBP1Q8TBY8 1022 aa5.6□□□□□ -1.51
SCFD1-219ENST00000556413 CRAMP1Q96RY5 1269 aa5.6□□□□□ -1.51
SCFD1-219ENST00000556413 PITHD1Q9GZP4 211 aaPredicted RBP5.6□□□□□ -1.51
SCFD1-219ENST00000556413 C14orf93Q9H972 538 aaKnown RBP5.6□□□□□ -1.51
SCFD1-219ENST00000556413 NCDNQ9UBB6 729 aa5.6□□□□□ -1.51
SCFD1-219ENST00000556413 GRXCR1A8MXD5 290 aa5.59□□□□□ -1.51
SCFD1-219ENST00000556413 OPA1O60313 960 aa5.59□□□□□ -1.51
SCFD1-219ENST00000556413 MFAP3LO75121 409 aa5.59□□□□□ -1.51
SCFD1-219ENST00000556413 SLC9A1P19634 815 aa5.59□□□□□ -1.51
SCFD1-219ENST00000556413 RANGAP1P46060 587 aaPredicted RBP5.59□□□□□ -1.51
SCFD1-219ENST00000556413 FSTL1Q12841 308 aa5.59□□□□□ -1.51
SCFD1-219ENST00000556413 SPIDRQ14159 915 aa5.59□□□□□ -1.51
SCFD1-219ENST00000556413 PIK3R6Q5UE93 754 aa5.59□□□□□ -1.51
SCFD1-219ENST00000556413 ESRP1Q6NXG1 681 aaKnown RBP5.59□□□□□ -1.51
SCFD1-219ENST00000556413 RHOUQ7L0Q8 258 aa5.59□□□□□ -1.51
SCFD1-219ENST00000556413 CMTM4Q8IZR5 234 aa5.59□□□□□ -1.51
SCFD1-219ENST00000556413 ZNF276Q8N554 614 aa5.59□□□□□ -1.51
SCFD1-219ENST00000556413 LENG9Q96B70 501 aa5.59□□□□□ -1.51
SCFD1-219ENST00000556413 ARL8AQ96BM9 186 aa5.59□□□□□ -1.51
SCFD1-219ENST00000556413 ELF4Q99607 663 aaPredicted RBP5.59□□□□□ -1.51
SCFD1-219ENST00000556413 B4GALT6Q9UBX8 382 aa5.59□□□□□ -1.51
SCFD1-219ENST00000556413 A0A0A6YYJ9 748 aa5.58□□□□□ -1.52
SCFD1-219ENST00000556413 A0A0A6YYK5 440 aaPredicted RBP5.58□□□□□ -1.52
SCFD1-219ENST00000556413 STC2O76061 302 aa5.58□□□□□ -1.52
SCFD1-219ENST00000556413 IPO13O94829 963 aaKnown RBP5.58□□□□□ -1.52
SCFD1-219ENST00000556413 NR4A1P22736 598 aa5.58□□□□□ -1.52
SCFD1-219ENST00000556413 NPEPPSP55786 919 aa5.58□□□□□ -1.52
SCFD1-219ENST00000556413 ADCY2Q08462 1091 aa5.58□□□□□ -1.52
SCFD1-219ENST00000556413 ADCY1Q08828 1119 aa5.58□□□□□ -1.52
SCFD1-219ENST00000556413 MBNL2Q5VZF2 373 aaKnown RBP5.58□□□□□ -1.52
SCFD1-219ENST00000556413 CREB3L3Q68CJ9 461 aa5.58□□□□□ -1.52
SCFD1-219ENST00000556413 NAIF1Q69YI7 327 aaPredicted RBP5.58□□□□□ -1.52
SCFD1-219ENST00000556413 UNQ6494/PRO21346Q6UXR6 183 aa5.58□□□□□ -1.52
SCFD1-219ENST00000556413 SOX7Q9BT81 388 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms