RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 LZTS1Q9Y250 596 aa13.23□□□□□ -0.29
VRK1-204ENST00000555351 COL4A3BPQ9Y5P4 624 aa13.23□□□□□ -0.29
VRK1-204ENST00000555351 A0A087WZ62 844 aa13.22□□□□□ -0.29
VRK1-204ENST00000555351 TBKBP1A7MCY6 615 aa13.22□□□□□ -0.29
VRK1-204ENST00000555351 ZNF623O75123 536 aa13.22□□□□□ -0.29
VRK1-204ENST00000555351 ITGB1P05556 798 aa13.22□□□□□ -0.29
VRK1-204ENST00000555351 LAG3P18627 525 aa13.22□□□□□ -0.29
VRK1-204ENST00000555351 MUTP22033 750 aa13.22□□□□□ -0.29
VRK1-204ENST00000555351 MCM2P49736 904 aa13.22□□□□□ -0.29
VRK1-204ENST00000555351 RAB27AP51159 221 aa13.22□□□□□ -0.29
VRK1-204ENST00000555351 KCNQ1P51787 676 aa13.22□□□□□ -0.29
VRK1-204ENST00000555351 MXD4Q14582 209 aaPredicted RBP13.22□□□□□ -0.29
VRK1-204ENST00000555351 CTC1Q2NKJ3 1217 aa13.22□□□□□ -0.29
VRK1-204ENST00000555351 PAN2Q504Q3 1202 aaKnown RBP13.22□□□□□ -0.29
VRK1-204ENST00000555351 TCEAL5Q5H9L2 206 aa13.22□□□□□ -0.29
VRK1-204ENST00000555351 FAM102BQ5T8I3 360 aa13.22□□□□□ -0.29
VRK1-204ENST00000555351 PLA2G4FQ68DD2 849 aa13.22□□□□□ -0.29
VRK1-204ENST00000555351 ZNF598Q86UK7 904 aaKnown RBP13.22□□□□□ -0.29
VRK1-204ENST00000555351 NOSTRINQ8IVI9 506 aa13.22□□□□□ -0.29
VRK1-204ENST00000555351 LRRC43Q8N309 656 aa13.22□□□□□ -0.29
VRK1-204ENST00000555351 CASD1Q96PB1 797 aa13.22□□□□□ -0.29
VRK1-204ENST00000555351 FDXACB1Q9BRP7 624 aaPredicted RBP13.22□□□□□ -0.29
VRK1-204ENST00000555351 IFT122Q9HBG6 1241 aa13.22□□□□□ -0.29
VRK1-204ENST00000555351 SPTBN5Q9NRC6 3674 aaKnown RBP13.22□□□□□ -0.29
VRK1-204ENST00000555351 VCANP13611 3396 aa13.21□□□□□ -0.29
VRK1-204ENST00000555351 TTC28Q96AY4 2481 aa13.21□□□□□ -0.29
VRK1-204ENST00000555351 DGAT1O75907 488 aa13.21□□□□□ -0.29
VRK1-204ENST00000555351 U2AF2P26368 475 aaKnown RBP eCLIP13.21□□□□□ -0.29
VRK1-204ENST00000555351 PPM1AP35813 382 aa13.21□□□□□ -0.29
VRK1-204ENST00000555351 TXKP42681 527 aa13.21□□□□□ -0.29
VRK1-204ENST00000555351 CAMK1Q14012 370 aa13.21□□□□□ -0.29
VRK1-204ENST00000555351 EMC2Q15006 297 aa13.21□□□□□ -0.29
VRK1-204ENST00000555351 XKR9Q5GH70 373 aa13.21□□□□□ -0.29
VRK1-204ENST00000555351 IFNLR1Q8IU57 520 aaPredicted RBP13.21□□□□□ -0.29
VRK1-204ENST00000555351 TPH2Q8IWU9 490 aa13.21□□□□□ -0.29
VRK1-204ENST00000555351 ABI1Q8IZP0 508 aa13.21□□□□□ -0.29
VRK1-204ENST00000555351 KLHL23Q8NBE8 558 aa13.21□□□□□ -0.29
VRK1-204ENST00000555351 PRPF31Q8WWY3 499 aaKnown RBP13.21□□□□□ -0.29
VRK1-204ENST00000555351 SH2D3AQ9BRG2 576 aa13.21□□□□□ -0.29
VRK1-204ENST00000555351 MRPL9Q9BYD2 267 aaKnown RBP13.21□□□□□ -0.29
VRK1-204ENST00000555351 NFKBIZQ9BYH8 718 aa13.21□□□□□ -0.29
VRK1-204ENST00000555351 CWH43Q9H720 699 aa13.21□□□□□ -0.29
VRK1-204ENST00000555351 TUFT1Q9NNX1 390 aa13.21□□□□□ -0.29
VRK1-204ENST00000555351 RNF19AQ9NV58 838 aa13.21□□□□□ -0.29
VRK1-204ENST00000555351 TYW1Q9NV66 732 aaKnown RBP13.21□□□□□ -0.29
VRK1-204ENST00000555351 FAM50BQ9Y247 325 aa13.21□□□□□ -0.29
VRK1-204ENST00000555351 ATG2AQ2TAZ0 1938 aa13.21□□□□□ -0.3
VRK1-204ENST00000555351 WNT7AO00755 349 aa13.2□□□□□ -0.3
VRK1-204ENST00000555351 FGFR1P11362 822 aa13.2□□□□□ -0.3
VRK1-204ENST00000555351 MCM7P33993 719 aa13.2□□□□□ -0.3
VRK1-204ENST00000555351 PHKA2P46019 1235 aa13.2□□□□□ -0.3
VRK1-204ENST00000555351 GATMP50440 423 aa13.2□□□□□ -0.3
VRK1-204ENST00000555351 PLCB3Q01970 1234 aa13.2□□□□□ -0.3
VRK1-204ENST00000555351 CYP4A11Q02928 519 aa13.2□□□□□ -0.3
VRK1-204ENST00000555351 LAMTOR4Q0VGL1 99 aa13.2□□□□□ -0.3
VRK1-204ENST00000555351 CTTNQ14247 550 aaKnown RBP13.2□□□□□ -0.3
VRK1-204ENST00000555351 CATSPER4Q7RTX7 472 aa13.2□□□□□ -0.3
VRK1-204ENST00000555351 FERMT3Q86UX7 667 aa13.2□□□□□ -0.3
VRK1-204ENST00000555351 ZNF579Q8NAF0 562 aaKnown RBP13.2□□□□□ -0.3
VRK1-204ENST00000555351 COLGALT1Q8NBJ5 622 aa13.2□□□□□ -0.3
VRK1-204ENST00000555351 NLRP4Q96MN2 994 aa13.2□□□□□ -0.3
VRK1-204ENST00000555351 MTRQ99707 1265 aa13.2□□□□□ -0.3
VRK1-204ENST00000555351 POLR3CQ9BUI4 534 aaPredicted RBP13.2□□□□□ -0.3
VRK1-204ENST00000555351 ALG13Q9NP73 1137 aaKnown RBP13.2□□□□□ -0.3
VRK1-204ENST00000555351 AGPAT5Q9NUQ2 364 aa13.2□□□□□ -0.3
VRK1-204ENST00000555351 DBR1Q9UK59 544 aaKnown RBP13.2□□□□□ -0.3
VRK1-204ENST00000555351 NOL7Q9UMY1 257 aaKnown RBP13.2□□□□□ -0.3
VRK1-204ENST00000555351 STK24Q9Y6E0 443 aa13.2□□□□□ -0.3
VRK1-204ENST00000555351 XIRP2A4UGR9 3374 aa13.2□□□□□ -0.3
VRK1-204ENST00000555351 LAD1O00515 517 aa13.19□□□□□ -0.3
VRK1-204ENST00000555351 FGF18O76093 207 aa13.19□□□□□ -0.3
VRK1-204ENST00000555351 OR52Z1P0C646 297 aa13.19□□□□□ -0.3
VRK1-204ENST00000555351 ATF7P17544 494 aaPredicted RBP13.19□□□□□ -0.3
VRK1-204ENST00000555351 KCNA5P22460 613 aa13.19□□□□□ -0.3
VRK1-204ENST00000555351 RPA1P27694 616 aa13.19□□□□□ -0.3
VRK1-204ENST00000555351 AXLP30530 894 aa13.19□□□□□ -0.3
VRK1-204ENST00000555351 RARRES1P49788 294 aa13.19□□□□□ -0.3
VRK1-204ENST00000555351 GUCY1B3Q02153 619 aa13.19□□□□□ -0.3
VRK1-204ENST00000555351 HYAL1Q12794 435 aa13.19□□□□□ -0.3
VRK1-204ENST00000555351 GNL2Q13823 731 aaKnown RBP13.19□□□□□ -0.3
VRK1-204ENST00000555351 TFDP1Q14186 410 aa13.19□□□□□ -0.3
VRK1-204ENST00000555351 SPOUT1Q5T280 376 aaKnown RBP13.19□□□□□ -0.3
VRK1-204ENST00000555351 TWF2Q6IBS0 349 aaKnown RBP13.19□□□□□ -0.3
VRK1-204ENST00000555351 KSR1Q8IVT5 923 aa13.19□□□□□ -0.3
VRK1-204ENST00000555351 CNNM3Q8NE01 707 aa13.19□□□□□ -0.3
VRK1-204ENST00000555351 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.19□□□□□ -0.3
VRK1-204ENST00000555351 ERMNQ8TAM6 284 aa13.19□□□□□ -0.3
VRK1-204ENST00000555351 POF1BQ8WVV4 589 aa13.19□□□□□ -0.3
VRK1-204ENST00000555351 PGBD4Q96DM1 585 aa13.19□□□□□ -0.3
VRK1-204ENST00000555351 CCDC51Q96ER9 411 aa13.19□□□□□ -0.3
VRK1-204ENST00000555351 ZNF668Q96K58 619 aaPredicted RBP13.19□□□□□ -0.3
VRK1-204ENST00000555351 NACC1Q96RE7 527 aa13.19□□□□□ -0.3
VRK1-204ENST00000555351 TMEM60Q9H2L4 133 aa13.19□□□□□ -0.3
VRK1-204ENST00000555351 FAM105AQ9NUU6 356 aa13.19□□□□□ -0.3
VRK1-204ENST00000555351 PUF60Q9UHX1 559 aaKnown RBP13.19□□□□□ -0.3
VRK1-204ENST00000555351 PIN4Q9Y237 131 aaKnown RBP13.19□□□□□ -0.3
VRK1-204ENST00000555351 PLXNA4Q9HCM2 1894 aa13.19□□□□□ -0.3
VRK1-204ENST00000555351 GRXCR2A6NFK2 248 aa13.18□□□□□ -0.3
VRK1-204ENST00000555351 ZBTB39O15060 712 aa13.18□□□□□ -0.3
VRK1-204ENST00000555351 CSDE1O75534 798 aaKnown RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms