RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 C4orf19Q8IY42 314 aa18.28■□□□□ 0.52
VPS29-207ENST00000549970 THNSL1Q8IYQ7 743 aa18.28■□□□□ 0.52
VPS29-207ENST00000549970 COLGALT1Q8NBJ5 622 aa18.28■□□□□ 0.52
VPS29-207ENST00000549970 SLC7A3Q8WY07 619 aa18.28■□□□□ 0.52
VPS29-207ENST00000549970 PPP2R3CQ969Q6 453 aa18.28■□□□□ 0.52
VPS29-207ENST00000549970 CASD1Q96PB1 797 aa18.28■□□□□ 0.52
VPS29-207ENST00000549970 CWH43Q9H720 699 aa18.28■□□□□ 0.52
VPS29-207ENST00000549970 LIMCH1Q9UPQ0 1083 aa18.28■□□□□ 0.52
VPS29-207ENST00000549970 PCDHGC5Q9Y5F6 944 aa18.28■□□□□ 0.52
VPS29-207ENST00000549970 C5orf42Q9H799 3197 aa18.27■□□□□ 0.52
VPS29-207ENST00000549970 A0A0U1RQF3 1178 aa18.27■□□□□ 0.52
VPS29-207ENST00000549970 LINC01565O15544 149 aa18.27■□□□□ 0.52
VPS29-207ENST00000549970 FGF18O76093 207 aa18.27■□□□□ 0.52
VPS29-207ENST00000549970 LAG3P18627 525 aa18.27■□□□□ 0.52
VPS29-207ENST00000549970 DLX2Q07687 328 aaPredicted RBP18.27■□□□□ 0.52
VPS29-207ENST00000549970 CLUL1Q15846 466 aa18.27■□□□□ 0.52
VPS29-207ENST00000549970 LRRC55Q6ZSA7 311 aa18.27■□□□□ 0.52
VPS29-207ENST00000549970 FAM178BQ8IXR5 827 aa18.27■□□□□ 0.52
VPS29-207ENST00000549970 TMEM143Q96AN5 459 aa18.27■□□□□ 0.52
VPS29-207ENST00000549970 INO80BQ9C086 356 aaPredicted RBP18.27■□□□□ 0.52
VPS29-207ENST00000549970 ZSWIM4Q9H7M6 989 aa18.27■□□□□ 0.52
VPS29-207ENST00000549970 CD320Q9NPF0 282 aa18.27■□□□□ 0.52
VPS29-207ENST00000549970 DACT1Q9NYF0 836 aa18.27■□□□□ 0.52
VPS29-207ENST00000549970 PIN4Q9Y237 131 aaKnown RBP18.27■□□□□ 0.52
VPS29-207ENST00000549970 COL4A3BPQ9Y5P4 624 aa18.27■□□□□ 0.52
VPS29-207ENST00000549970 ZBTB39O15060 712 aa18.26■□□□□ 0.51
VPS29-207ENST00000549970 NEMFO60524 1076 aa18.26■□□□□ 0.51
VPS29-207ENST00000549970 TBX10O75333 385 aa18.26■□□□□ 0.51
VPS29-207ENST00000549970 ATP2B1P20020 1258 aa18.26■□□□□ 0.51
VPS29-207ENST00000549970 XKR9Q5GH70 373 aa18.26■□□□□ 0.51
VPS29-207ENST00000549970 CLLU1OSQ5K130 101 aa18.26■□□□□ 0.51
VPS29-207ENST00000549970 TWF2Q6IBS0 349 aaKnown RBP18.26■□□□□ 0.51
VPS29-207ENST00000549970 OTUD6AQ7L8S5 288 aa18.26■□□□□ 0.51
VPS29-207ENST00000549970 CATSPER4Q7RTX7 472 aa18.26■□□□□ 0.51
VPS29-207ENST00000549970 RBM23Q86U06 439 aaKnown RBP18.26■□□□□ 0.51
VPS29-207ENST00000549970 TPH2Q8IWU9 490 aa18.26■□□□□ 0.51
VPS29-207ENST00000549970 LRRC43Q8N309 656 aa18.26■□□□□ 0.51
VPS29-207ENST00000549970 HELQQ8TDG4 1101 aa18.26■□□□□ 0.51
VPS29-207ENST00000549970 MICAL1Q8TDZ2 1067 aa18.26■□□□□ 0.51
VPS29-207ENST00000549970 EIF2AK1Q9BQI3 630 aaKnown RBP18.26■□□□□ 0.51
VPS29-207ENST00000549970 DHX33Q9H6R0 707 aaKnown RBP18.26■□□□□ 0.51
VPS29-207ENST00000549970 TTC12Q9H892 705 aaPredicted RBP18.26■□□□□ 0.51
VPS29-207ENST00000549970 CHST12Q9NRB3 414 aa18.26■□□□□ 0.51
VPS29-207ENST00000549970 PCDHA12Q9UN75 941 aa18.26■□□□□ 0.51
VPS29-207ENST00000549970 PPME1Q9Y570 386 aa18.26■□□□□ 0.51
VPS29-207ENST00000549970 ARID2Q68CP9 1835 aa18.26■□□□□ 0.51
VPS29-207ENST00000549970 EOMESO95936 686 aa18.25■□□□□ 0.51
VPS29-207ENST00000549970 SRGAP2CP0DJJ0 459 aa18.25■□□□□ 0.51
VPS29-207ENST00000549970 ATF7P17544 494 aaPredicted RBP18.25■□□□□ 0.51
VPS29-207ENST00000549970 SSTR3P32745 418 aaPredicted RBP18.25■□□□□ 0.51
VPS29-207ENST00000549970 PBX3P40426 434 aa18.25■□□□□ 0.51
VPS29-207ENST00000549970 RFC5P40937 340 aa18.25■□□□□ 0.51
VPS29-207ENST00000549970 TXKP42681 527 aa18.25■□□□□ 0.51
VPS29-207ENST00000549970 NRIP1P48552 1158 aa18.25■□□□□ 0.51
VPS29-207ENST00000549970 NDUFV1P49821 464 aa18.25■□□□□ 0.51
VPS29-207ENST00000549970 UBE3AQ05086 875 aa18.25■□□□□ 0.51
VPS29-207ENST00000549970 EMC2Q15006 297 aa18.25■□□□□ 0.51
VPS29-207ENST00000549970 SAFBQ15424 915 aaKnown RBP eCLIP18.25■□□□□ 0.51
VPS29-207ENST00000549970 CSPP1Q1MSJ5 1256 aa18.25■□□□□ 0.51
VPS29-207ENST00000549970 C8orf34Q49A92 452 aa18.25■□□□□ 0.51
VPS29-207ENST00000549970 ZNF598Q86UK7 904 aaKnown RBP18.25■□□□□ 0.51
VPS29-207ENST00000549970 EXOC8Q8IYI6 725 aa18.25■□□□□ 0.51
VPS29-207ENST00000549970 PRPF31Q8WWY3 499 aaKnown RBP18.25■□□□□ 0.51
VPS29-207ENST00000549970 PSPC1Q8WXF1 523 aaKnown RBP18.25■□□□□ 0.51
VPS29-207ENST00000549970 TLR9Q9NR96 1032 aa18.25■□□□□ 0.51
VPS29-207ENST00000549970 FAM50BQ9Y247 325 aa18.25■□□□□ 0.51
VPS29-207ENST00000549970 SLITRK3O94933 977 aa18.24■□□□□ 0.51
VPS29-207ENST00000549970 PHKA2P46019 1235 aa18.24■□□□□ 0.51
VPS29-207ENST00000549970 ADAM15Q13444 863 aa18.24■□□□□ 0.51
VPS29-207ENST00000549970 LONRF3Q496Y0 759 aa18.24■□□□□ 0.51
VPS29-207ENST00000549970 KCNT2Q6UVM3 1135 aa18.24■□□□□ 0.51
VPS29-207ENST00000549970 GJD3Q8N144 294 aa18.24■□□□□ 0.51
VPS29-207ENST00000549970 KHSRPQ92945 711 aaKnown RBP eCLIP18.24■□□□□ 0.516e-11■□□□□ 11.2
VPS29-207ENST00000549970 C8orf76Q96K31 380 aa18.24■□□□□ 0.51
VPS29-207ENST00000549970 ZNF558Q96NG5 402 aa18.24■□□□□ 0.51
VPS29-207ENST00000549970 EPHX3Q9H6B9 360 aa18.24■□□□□ 0.51
VPS29-207ENST00000549970 IFT122Q9HBG6 1241 aa18.24■□□□□ 0.51
VPS29-207ENST00000549970 MCM7P33993 719 aa18.23■□□□□ 0.51
VPS29-207ENST00000549970 ERVFC1P60507 584 aa18.23■□□□□ 0.51
VPS29-207ENST00000549970 LAMTOR4Q0VGL1 99 aa18.23■□□□□ 0.51
VPS29-207ENST00000549970 EFHBQ8N7U6 833 aa18.23■□□□□ 0.51
VPS29-207ENST00000549970 TCP11Q8WWU5 503 aa18.23■□□□□ 0.51
VPS29-207ENST00000549970 LPPQ93052 612 aa18.23■□□□□ 0.51
VPS29-207ENST00000549970 MTMR9Q96QG7 549 aa18.23■□□□□ 0.51
VPS29-207ENST00000549970 KIF2CQ99661 725 aa18.23■□□□□ 0.51
VPS29-207ENST00000549970 MTRQ99707 1265 aa18.23■□□□□ 0.51
VPS29-207ENST00000549970 LLPHQ9BRT6 129 aaKnown RBP18.23■□□□□ 0.51
VPS29-207ENST00000549970 TMEM60Q9H2L4 133 aa18.23■□□□□ 0.51
VPS29-207ENST00000549970 TLE6Q9H808 572 aa18.23■□□□□ 0.51
VPS29-207ENST00000549970 FAM105AQ9NUU6 356 aa18.23■□□□□ 0.51
VPS29-207ENST00000549970 POTEMA6NI47 508 aa18.22■□□□□ 0.51
VPS29-207ENST00000549970 PER2O15055 1255 aa18.22■□□□□ 0.51
VPS29-207ENST00000549970 GAS2O43903 313 aaKnown RBP18.22■□□□□ 0.51
VPS29-207ENST00000549970 PLCB3Q01970 1234 aa18.22■□□□□ 0.51
VPS29-207ENST00000549970 PLPP4Q5VZY2 271 aa18.22■□□□□ 0.51
VPS29-207ENST00000549970 RNF149Q8NC42 400 aa18.22■□□□□ 0.51
VPS29-207ENST00000549970 MRPS27Q92552 414 aaKnown RBP18.22■□□□□ 0.51
VPS29-207ENST00000549970 ZSCAN31Q96LW9 406 aaPredicted RBP18.22■□□□□ 0.51
VPS29-207ENST00000549970 CCDC43Q96MW1 224 aaKnown RBP18.22■□□□□ 0.51
VPS29-207ENST00000549970 HSD17B14Q9BPX1 270 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms