RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 PEAR1Q5VY43 1037 aaPredicted RBP7.64□□□□□ -1.19
LIMA1-204ENST00000549064 TTBK2Q6IQ55 1244 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 MRPL14Q6P1L8 145 aaKnown RBP7.64□□□□□ -1.19
LIMA1-204ENST00000549064 CCDC62Q6P9F0 684 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 ZNF662Q6ZS27 426 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 DGLUCYQ7Z3D6 616 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 FIBCD1Q8N539 461 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 CLEC4DQ8WXI8 215 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 PMEPA1Q969W9 287 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 GMCL1Q96IK5 515 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 RIPOR3Q96MK2 946 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 C11orf84Q9BUA3 381 aaPredicted RBP7.64□□□□□ -1.19
LIMA1-204ENST00000549064 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.64□□□□□ -1.19
LIMA1-204ENST00000549064 OSBPL2Q9H1P3 480 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 EPB41L4AQ9HCS5 686 aaPredicted RBP7.64□□□□□ -1.19
LIMA1-204ENST00000549064 ADAMTS1Q9UHI8 967 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 TPRP12270 2363 aaKnown RBP7.63□□□□□ -1.19
LIMA1-204ENST00000549064 EMSYQ7Z589 1322 aa7.63□□□□□ -1.19
LIMA1-204ENST00000549064 LOC102724159A0A0B4J2E5 919 aa7.63□□□□□ -1.19
LIMA1-204ENST00000549064 IPO8O15397 1037 aaKnown RBP7.63□□□□□ -1.19
LIMA1-204ENST00000549064 PLA2G6O60733 806 aa7.63□□□□□ -1.19
LIMA1-204ENST00000549064 GH1P01241 217 aa7.63□□□□□ -1.19
LIMA1-204ENST00000549064 MMP1P03956 469 aa7.63□□□□□ -1.19
LIMA1-204ENST00000549064 RB1P06400 928 aa7.63□□□□□ -1.19
LIMA1-204ENST00000549064 TSPY3P0CV98 308 aa7.63□□□□□ -1.19
LIMA1-204ENST00000549064 TSPY8P0CW00 308 aa7.63□□□□□ -1.19
LIMA1-204ENST00000549064 ARP10275 920 aa7.63□□□□□ -1.19
LIMA1-204ENST00000549064 CASTP20810 708 aaKnown RBP7.63□□□□□ -1.19
LIMA1-204ENST00000549064 DNAJB1P25685 340 aa7.63□□□□□ -1.19
LIMA1-204ENST00000549064 ICAM3P32942 547 aa7.63□□□□□ -1.19
LIMA1-204ENST00000549064 RPS6P62753 249 aaKnown RBP7.63□□□□□ -1.19
LIMA1-204ENST00000549064 TFAP4Q01664 338 aa7.63□□□□□ -1.19
LIMA1-204ENST00000549064 COASYQ13057 564 aa7.63□□□□□ -1.19
LIMA1-204ENST00000549064 BMS1Q14692 1282 aaKnown RBP7.63□□□□□ -1.19
LIMA1-204ENST00000549064 PWP2Q15269 919 aaKnown RBP7.63□□□□□ -1.19
LIMA1-204ENST00000549064 KIAA0753Q2KHM9 967 aa7.63□□□□□ -1.19
LIMA1-204ENST00000549064 RCSD1Q6JBY9 416 aa7.63□□□□□ -1.19
LIMA1-204ENST00000549064 CEP85Q6P2H3 762 aa7.63□□□□□ -1.19
LIMA1-204ENST00000549064 RNF207Q6ZRF8 634 aa7.63□□□□□ -1.19
LIMA1-204ENST00000549064 SEPT14Q6ZU15 432 aa7.63□□□□□ -1.19
LIMA1-204ENST00000549064 RBM23Q86U06 439 aaKnown RBP7.63□□□□□ -1.19
LIMA1-204ENST00000549064 ERC1Q8IUD2 1116 aa7.63□□□□□ -1.19
LIMA1-204ENST00000549064 DHX37Q8IY37 1157 aaKnown RBP7.63□□□□□ -1.19
LIMA1-204ENST00000549064 NEDD1Q8NHV4 660 aa7.63□□□□□ -1.19
LIMA1-204ENST00000549064 SEPT8Q92599 483 aa7.63□□□□□ -1.19
LIMA1-204ENST00000549064 IL17RAQ96F46 866 aa7.63□□□□□ -1.19
LIMA1-204ENST00000549064 STRBPQ96SI9 672 aaKnown RBP7.63□□□□□ -1.19
LIMA1-204ENST00000549064 PHF7Q9BWX1 381 aaPredicted RBP7.63□□□□□ -1.19
LIMA1-204ENST00000549064 OXCT2Q9BYC2 517 aaPredicted RBP7.63□□□□□ -1.19
LIMA1-204ENST00000549064 RANBP17Q9H2T7 1088 aaKnown RBP7.63□□□□□ -1.19
LIMA1-204ENST00000549064 CRISPLD1Q9H336 500 aa7.63□□□□□ -1.19
LIMA1-204ENST00000549064 PPP4R2Q9NY27 417 aa7.63□□□□□ -1.19
LIMA1-204ENST00000549064 SYNPO2Q9UMS6 1093 aa7.63□□□□□ -1.19
LIMA1-204ENST00000549064 PCDHGC5Q9Y5F6 944 aa7.63□□□□□ -1.19
LIMA1-204ENST00000549064 EP300Q09472 2414 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-204ENST00000549064 ADGRA3Q8IWK6 1321 aa7.62□□□□□ -1.19
LIMA1-204ENST00000549064 TLDC2A0PJX2 215 aa7.62□□□□□ -1.19
LIMA1-204ENST00000549064 HAS3O00219 553 aa7.62□□□□□ -1.19
LIMA1-204ENST00000549064 NMT2O60551 498 aa7.62□□□□□ -1.19
LIMA1-204ENST00000549064 F2P00734 622 aa7.62□□□□□ -1.19
LIMA1-204ENST00000549064 IFIT2P09913 472 aaKnown RBP7.62□□□□□ -1.19
LIMA1-204ENST00000549064 EDN3P14138 238 aa7.62□□□□□ -1.19
LIMA1-204ENST00000549064 TARSP26639 723 aaKnown RBP7.62□□□□□ -1.19
LIMA1-204ENST00000549064 GBP2P32456 591 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-204ENST00000549064 NRIP1P48552 1158 aa7.62□□□□□ -1.19
LIMA1-204ENST00000549064 DGKDQ16760 1214 aa7.62□□□□□ -1.19
LIMA1-204ENST00000549064 CCDC96Q2M329 555 aa7.62□□□□□ -1.19
LIMA1-204ENST00000549064 SERINC5Q86VE9 423 aa7.62□□□□□ -1.19
LIMA1-204ENST00000549064 RELL1Q8IUW5 271 aa7.62□□□□□ -1.19
LIMA1-204ENST00000549064 EFHBQ8N7U6 833 aa7.62□□□□□ -1.19
LIMA1-204ENST00000549064 RASGRP4Q8TDF6 673 aa7.62□□□□□ -1.19
LIMA1-204ENST00000549064 RSRP1Q9BUV0 290 aa7.62□□□□□ -1.19
LIMA1-204ENST00000549064 SMOC2Q9H3U7 446 aa7.62□□□□□ -1.19
LIMA1-204ENST00000549064 RC3H2Q9HBD1 1191 aaKnown RBP7.62□□□□□ -1.19
LIMA1-204ENST00000549064 FRMPD2Q68DX3 1309 aaPredicted RBP7.61□□□□□ -1.19
LIMA1-204ENST00000549064 MMP20O60882 483 aa7.61□□□□□ -1.19
LIMA1-204ENST00000549064 SSBP05455 408 aaKnown RBP eCLIP7.61□□□□□ -1.19
LIMA1-204ENST00000549064 ITGB1P05556 798 aa7.61□□□□□ -1.19
LIMA1-204ENST00000549064 TDO2P48775 406 aa7.61□□□□□ -1.19
LIMA1-204ENST00000549064 NASPP49321 788 aaPredicted RBP7.61□□□□□ -1.19
LIMA1-204ENST00000549064 SFSWAPQ12872 951 aaKnown RBP7.61□□□□□ -1.19
LIMA1-204ENST00000549064 KIAA2013Q8IYS2 634 aa7.61□□□□□ -1.19
LIMA1-204ENST00000549064 CLASRPQ8N2M8 674 aaKnown RBP7.61□□□□□ -1.19
LIMA1-204ENST00000549064 PGBD3Q8N328 593 aa7.61□□□□□ -1.19
LIMA1-204ENST00000549064 VN1R2Q8NFZ6 395 aa7.61□□□□□ -1.19
LIMA1-204ENST00000549064 SUSD6Q92537 303 aa7.61□□□□□ -1.19
LIMA1-204ENST00000549064 HAUS7Q99871 368 aa7.61□□□□□ -1.19
LIMA1-204ENST00000549064 KATNAL1Q9BW62 490 aa7.61□□□□□ -1.19
LIMA1-204ENST00000549064 APOL5Q9BWW9 433 aa7.61□□□□□ -1.19
LIMA1-204ENST00000549064 IL17RBQ9NRM6 502 aa7.61□□□□□ -1.19
LIMA1-204ENST00000549064 SALL4Q9UJQ4 1053 aa7.61□□□□□ -1.19
LIMA1-204ENST00000549064 STX8Q9UNK0 236 aa7.61□□□□□ -1.19
LIMA1-204ENST00000549064 PLAGL2Q9UPG8 496 aa7.61□□□□□ -1.19
LIMA1-204ENST00000549064 DOCK5Q9H7D0 1870 aa7.61□□□□□ -1.19
LIMA1-204ENST00000549064 TTC3P53804 2025 aa7.61□□□□□ -1.19
LIMA1-204ENST00000549064 PER2O15055 1255 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 F11P03951 625 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 RLBP1P12271 317 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 ACPPP15309 386 aa7.6□□□□□ -1.19
LIMA1-204ENST00000549064 ATP5JP18859 108 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms